Wall clock time and date at job start Tue Mar 31 2020 05:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.46938 * 2 1 4 4 N 1.30834 * 125.89846 * 269.97149 * 3 2 1 5 5 N 1.40086 * 108.20877 * 180.02562 * 4 3 2 6 6 C 1.46495 * 126.04173 * 180.02562 * 5 4 3 7 7 C 1.34953 * 107.92265 * 359.75661 * 5 4 3 8 8 C 1.35324 * 107.74284 * 0.39257 * 7 5 4 9 9 C 1.50702 * 126.03623 * 179.87362 * 8 7 5 10 10 N 1.46906 * 109.47007 * 259.69118 * 9 8 7 11 11 C 1.46900 * 110.99955 * 66.04598 * 10 9 8 12 12 C 1.50692 * 109.47183 * 63.91206 * 11 10 9 13 13 H 1.08000 * 119.99947 * 4.56185 * 12 11 10 14 14 C 1.37879 * 120.00231 * 184.56707 * 12 11 10 15 15 N 1.31516 * 120.00440 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 119.99612 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47274 * 89.99854 * 16 14 12 18 18 H 1.48499 * 109.46619 * 209.99769 * 16 14 12 19 19 H 1.48497 * 109.46798 * 329.99415 * 16 14 12 20 20 C 1.46896 * 110.99743 * 190.00312 * 10 9 8 21 21 C 1.53002 * 109.46837 * 162.95259 * 20 10 9 22 22 O 1.42905 * 109.47044 * 66.35321 * 21 20 10 23 23 C 1.42895 * 114.00011 * 179.97438 * 22 21 20 24 24 H 1.08997 * 109.47353 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46723 * 300.00330 * 1 2 3 26 26 H 1.08998 * 109.47032 * 59.99508 * 1 2 3 27 27 H 1.08995 * 109.47144 * 240.00353 * 2 1 3 28 28 H 1.09001 * 109.46824 * 120.00023 * 2 1 3 29 29 H 1.08996 * 109.47733 * 89.96823 * 6 5 4 30 30 H 1.09004 * 109.47272 * 209.97238 * 6 5 4 31 31 H 1.09001 * 109.46856 * 329.96709 * 6 5 4 32 32 H 1.07996 * 126.13130 * 180.24042 * 7 5 4 33 33 H 1.08996 * 109.47174 * 139.68994 * 9 8 7 34 34 H 1.08998 * 109.47029 * 19.68604 * 9 8 7 35 35 H 1.09006 * 109.46764 * 183.91195 * 11 10 9 36 36 H 1.08998 * 109.47034 * 303.90971 * 11 10 9 37 37 H 0.96991 * 120.00162 * 180.02562 * 15 14 12 38 38 H 1.09000 * 109.47006 * 282.94977 * 20 10 9 39 39 H 1.09000 * 109.47339 * 42.95558 * 20 10 9 40 40 H 1.08999 * 109.46892 * 186.34643 * 21 20 10 41 41 H 1.08997 * 109.47109 * 306.35386 * 21 20 10 42 42 H 1.08994 * 109.47362 * 59.99541 * 23 22 21 43 43 H 1.09001 * 109.47395 * 180.02562 * 23 22 21 44 44 H 1.09006 * 109.47294 * 299.99709 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2885 2.1439 -1.0598 5 7 2.7337 3.4021 -0.6342 6 6 3.1275 4.5157 -1.5008 7 6 2.7301 3.4092 0.7153 8 6 2.3057 2.1940 1.1330 9 6 2.1491 1.7539 2.5658 10 7 3.3076 0.9399 2.9574 11 6 4.5362 1.7452 2.9715 12 6 4.4221 2.8172 4.0244 13 1 3.5589 2.8476 4.6727 14 6 5.4196 3.7593 4.1600 15 7 5.3199 4.6952 5.0785 16 14 6.9122 3.7072 3.0379 17 1 6.6487 4.5228 1.8253 18 1 8.0908 4.2548 3.7564 19 1 7.1837 2.3024 2.6403 20 6 3.0839 0.2980 4.2596 21 6 4.0821 -0.8471 4.4419 22 8 5.4052 -0.3153 4.5358 23 6 6.4193 -1.3069 4.7092 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.2563 5.1343 -1.7160 30 1 3.8849 5.1171 -0.9981 31 1 3.5344 4.1241 -2.4331 32 1 3.0170 4.2357 1.3486 33 1 1.2389 1.1628 2.6669 34 1 2.0865 2.6306 3.2104 35 1 5.3883 1.1038 3.1967 36 1 4.6781 2.2084 1.9951 37 1 6.0214 5.3582 5.1736 38 1 3.2225 1.0308 5.0545 39 1 2.0682 -0.0954 4.3011 40 1 3.8449 -1.3940 5.3544 41 1 4.0214 -1.5215 3.5878 42 1 6.4071 -1.9913 3.8609 43 1 7.3939 -0.8229 4.7721 44 1 6.2304 -1.8631 5.6274 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611413794.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:16 Heat of formation + Delta-G solvation = 38.735950 kcal Electronic energy + Delta-G solvation = -23484.477181 eV Core-core repulsion = 20246.208350 eV Total energy + Delta-G solvation = -3238.268831 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.76319 -37.77929 -36.03556 -34.29848 -32.26261 -31.52186 -30.50173 -28.90561 -27.61894 -26.32201 -25.46692 -23.96753 -22.85333 -22.16400 -20.19956 -19.59833 -18.62289 -16.92789 -16.12345 -15.92263 -15.57511 -15.07433 -14.58371 -14.36334 -14.01054 -13.95284 -13.81752 -13.69171 -13.05603 -12.79792 -12.52950 -12.29215 -12.23560 -11.97901 -11.65845 -11.40900 -11.27711 -11.22684 -10.94327 -10.82505 -10.68594 -10.62332 -10.51538 -10.00226 -9.83068 -9.72018 -9.36497 -8.95281 -8.70388 -8.39758 -7.79276 -6.98557 -5.97226 -3.91012 2.40441 2.95899 3.29821 3.32424 3.41700 3.51445 4.44922 4.52230 4.81803 5.17674 5.22955 5.33222 5.34174 5.39764 5.52123 5.56905 5.61532 5.65302 5.72448 5.81450 5.87315 5.89952 5.97555 6.00523 6.06514 6.08667 6.15525 6.27158 6.35849 6.44603 6.49800 6.65351 6.83494 6.90986 7.17993 7.26754 7.52212 7.58361 7.77690 7.84930 8.23264 8.27174 8.33862 8.60700 9.06771 9.69070 11.16346 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012506 B = 0.007719 C = 0.005531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.350615 B = 3626.666848 C = 5060.839539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.039 4.039 3 C 0.092 3.908 4 N -0.315 5.315 5 N -0.387 5.387 6 C 0.108 3.892 7 C 0.069 3.931 8 C -0.204 4.204 9 C 0.134 3.866 10 N -0.527 5.527 11 C 0.149 3.851 12 C -0.525 4.525 13 H 0.071 0.929 14 C 0.072 3.928 15 N -0.908 5.908 16 Si 0.872 3.128 17 H -0.283 1.283 18 H -0.291 1.291 19 H -0.263 1.263 20 C 0.054 3.946 21 C 0.073 3.927 22 O -0.358 6.358 23 C 0.029 3.971 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.174 0.826 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.016 0.984 37 H 0.259 0.741 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.038 0.962 41 H 0.045 0.955 42 H 0.032 0.968 43 H 0.077 0.923 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.716 -7.816 -7.680 12.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.079 4.079 3 C -0.075 4.075 4 N -0.137 5.137 5 N -0.169 5.169 6 C -0.034 4.034 7 C -0.077 4.077 8 C -0.215 4.215 9 C 0.005 3.995 10 N -0.250 5.250 11 C 0.023 3.977 12 C -0.564 4.564 13 H 0.089 0.911 14 C -0.129 4.129 15 N -0.548 5.548 16 Si 0.701 3.299 17 H -0.210 1.210 18 H -0.217 1.217 19 H -0.187 1.187 20 C -0.075 4.075 21 C -0.004 4.004 22 O -0.276 6.276 23 C -0.069 4.069 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.109 0.891 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.191 0.809 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.034 0.966 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.051 0.949 43 H 0.096 0.904 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -5.451 -7.659 -9.339 13.251 hybrid contribution 1.002 0.748 0.987 1.593 sum -4.449 -6.911 -8.352 11.718 Atomic orbital electron populations 1.21683 0.95030 1.01257 1.01959 1.19886 0.95251 0.89399 1.03350 1.22081 0.98592 0.96452 0.90378 1.77130 1.22460 0.91069 1.23083 1.48211 1.52757 1.11110 1.04850 1.21711 1.00578 0.86292 0.94833 1.22517 1.00521 1.00498 0.84148 1.19815 1.12149 0.93413 0.96154 1.20167 0.92764 0.96553 0.89989 1.62509 1.03822 1.32514 1.26172 1.20378 0.89190 0.92609 0.95542 1.21627 1.06691 1.10730 1.17328 0.91090 1.24844 0.97691 0.95267 0.95116 1.69931 1.34182 1.16498 1.34155 0.86891 0.83375 0.78898 0.80779 1.20970 1.21737 1.18724 1.22025 0.95625 0.96186 0.93648 1.22499 0.83557 0.96205 0.98177 1.88287 1.14791 1.31026 1.93510 1.22656 0.92945 0.92774 0.98477 0.92510 0.92455 0.93074 0.91381 0.89055 0.91424 0.89781 0.89920 0.80905 0.92414 0.93037 0.92554 0.96575 0.93113 0.91894 0.91640 0.94435 0.93675 0.94937 0.90416 0.95067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.89 37.16 0.37 -1.33 16 2 C -0.04 -0.57 6.31 -27.88 -0.18 -0.74 16 3 C 0.09 1.63 6.47 -82.41 -0.53 1.10 16 4 N -0.32 -5.81 12.58 33.67 0.42 -5.39 16 5 N -0.39 -6.72 4.01 -68.16 -0.27 -7.00 16 6 C 0.11 1.34 11.47 59.84 0.69 2.03 16 7 C 0.07 1.30 10.63 -17.22 -0.18 1.11 16 8 C -0.20 -3.87 4.70 -105.05 -0.49 -4.37 16 9 C 0.13 2.56 4.90 -4.97 -0.02 2.53 16 10 N -0.53 -10.73 4.65 -237.52 -1.10 -11.83 16 11 C 0.15 3.61 3.66 -4.98 -0.02 3.59 16 12 C -0.52 -14.31 7.88 -34.44 -0.27 -14.58 16 13 H 0.07 2.09 6.20 -52.49 -0.33 1.77 16 14 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 15 N -0.91 -27.56 13.96 55.43 0.77 -26.78 16 16 Si 0.87 22.10 27.38 -169.99 -4.65 17.45 16 17 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 19 H -0.26 -6.62 6.68 56.52 0.38 -6.24 16 20 C 0.05 1.00 5.36 -3.82 -0.02 0.98 16 21 C 0.07 1.24 6.24 37.16 0.23 1.47 16 22 O -0.36 -7.17 7.69 -35.23 -0.27 -7.44 16 23 C 0.03 0.44 11.01 101.05 1.11 1.55 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.09 1.32 7.96 -51.93 -0.41 0.91 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.17 3.27 8.06 -52.49 -0.42 2.85 16 33 H 0.06 0.96 7.85 -51.93 -0.41 0.55 16 34 H 0.05 1.10 6.65 -51.93 -0.35 0.76 16 35 H 0.06 1.46 4.74 -51.93 -0.25 1.21 16 36 H 0.02 0.41 5.75 -51.93 -0.30 0.11 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.06 1.37 6.07 -51.93 -0.32 1.06 16 39 H 0.07 1.01 7.79 -51.93 -0.40 0.61 16 40 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 44 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 352.22 15.07 5.31 5.31 Total: -1.00 -32.98 352.22 -6.63 -39.61 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -7.41 Total: 0.80 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: 0.58 Total: -4.71 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: -0.18 Total: -51.00 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.27 Total: -7.44 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.65 Total: 17.45 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.98 -6.63 -39.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611413794.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.344 kcal (2) G-P(sol) polarization free energy of solvation -32.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds