Wall clock time and date at job start Tue Mar 31 2020 05:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50693 * 120.00364 * 2 1 4 4 C 1.50700 * 119.99772 * 180.02562 * 2 1 3 5 5 N 1.46503 * 109.47513 * 94.99534 * 4 2 1 6 6 C 1.46498 * 119.99991 * 270.00424 * 5 4 2 7 7 C 1.34778 * 119.99891 * 89.99850 * 5 4 2 8 8 O 1.21593 * 119.99912 * 0.02562 * 7 5 4 9 9 N 1.34767 * 120.00119 * 180.02562 * 7 5 4 10 10 C 1.46497 * 120.00147 * 180.02562 * 9 7 5 11 11 C 1.53349 * 109.42224 * 275.12789 * 10 9 7 12 12 C 1.53189 * 109.15350 * 178.67121 * 11 10 9 13 13 N 1.46931 * 108.89061 * 54.57922 * 12 11 10 14 14 C 1.36938 * 120.62972 * 126.29441 * 13 12 11 15 15 H 1.08005 * 120.00173 * 331.83979 * 14 13 12 16 16 C 1.38813 * 119.99936 * 151.83343 * 14 13 12 17 17 N 1.31618 * 120.00004 * 343.08512 * 16 14 13 18 18 Si 1.86806 * 119.99953 * 163.08402 * 16 14 13 19 19 H 1.48500 * 109.46925 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.46793 * 120.00276 * 18 16 14 21 21 H 1.48498 * 109.46814 * 240.00176 * 18 16 14 22 22 C 1.46927 * 118.74004 * 306.32424 * 13 12 11 23 23 C 1.53047 * 109.46203 * 155.00199 * 10 9 7 24 24 H 1.08007 * 119.99528 * 359.97438 * 1 2 3 25 25 H 1.07991 * 120.00384 * 179.97438 * 1 2 3 26 26 H 1.09010 * 109.47260 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47276 * 300.00093 * 3 2 1 28 28 H 1.08994 * 109.47460 * 60.00134 * 3 2 1 29 29 H 1.09001 * 109.47310 * 334.99582 * 4 2 1 30 30 H 1.09005 * 109.47199 * 215.00126 * 4 2 1 31 31 H 1.09001 * 109.47100 * 269.99644 * 6 5 4 32 32 H 1.08995 * 109.47593 * 29.99730 * 6 5 4 33 33 H 1.09003 * 109.47019 * 149.99698 * 6 5 4 34 34 H 0.97002 * 120.00429 * 0.02562 * 9 7 5 35 35 H 1.08997 * 109.46024 * 35.03189 * 10 9 7 36 36 H 1.09001 * 109.68292 * 58.70764 * 11 10 9 37 37 H 1.08994 * 109.47524 * 298.51588 * 11 10 9 38 38 H 1.09000 * 109.58714 * 294.72587 * 12 11 10 39 39 H 1.09003 * 109.58688 * 174.43867 * 12 11 10 40 40 H 0.96996 * 119.99787 * 179.97438 * 17 16 14 41 41 H 1.09002 * 109.58255 * 173.39566 * 22 13 12 42 42 H 1.09000 * 109.58150 * 293.67300 * 22 13 12 43 43 H 1.09000 * 109.49464 * 61.43529 * 23 10 9 44 44 H 1.08999 * 109.52117 * 301.35281 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0634 -1.3051 -0.0006 5 7 2.4118 -1.6674 -1.3767 6 6 1.4913 -2.4803 -2.1755 7 6 3.5790 -1.2527 -1.9078 8 8 4.3431 -0.5783 -1.2446 9 7 3.8993 -1.5855 -3.1739 10 6 5.1683 -1.1352 -3.7509 11 6 4.9971 0.2792 -4.3183 12 6 6.3356 0.7568 -4.8901 13 7 6.8164 -0.2320 -5.8648 14 6 7.1510 0.1481 -7.1371 15 1 6.6734 1.0057 -7.5877 16 6 8.1040 -0.5686 -7.8477 17 7 8.9186 -1.3867 -7.2155 18 14 8.2305 -0.3721 -9.7010 19 1 7.2091 0.6002 -10.1665 20 1 9.5842 0.1252 -10.0548 21 1 7.9989 -1.6851 -10.3549 22 6 6.9308 -1.6365 -5.4487 23 6 5.5866 -2.0906 -4.8710 24 1 -0.5400 0.9354 0.0004 25 1 -0.5400 -0.9352 -0.0004 26 1 3.1353 1.1058 -0.0005 27 1 1.8002 1.8766 -0.8900 28 1 1.8003 1.8766 0.8899 29 1 1.4385 -2.0857 0.4334 30 1 2.9741 -1.1992 0.5889 31 1 1.7216 -3.5361 -2.0328 32 1 0.4666 -2.2859 -1.8590 33 1 1.6010 -2.2237 -3.2292 34 1 3.2896 -2.1232 -3.7031 35 1 5.9358 -1.1249 -2.9770 36 1 4.6776 0.9563 -3.5261 37 1 4.2477 0.2651 -5.1095 38 1 7.0621 0.8581 -4.0839 39 1 6.1998 1.7195 -5.3829 40 1 9.5843 -1.8878 -7.7121 41 1 7.1853 -2.2533 -6.3106 42 1 7.7076 -1.7305 -4.6899 43 1 4.8314 -2.0824 -5.6570 44 1 5.6848 -3.0998 -4.4712 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611512327.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:16 Heat of formation + Delta-G solvation = 12.422802 kcal Electronic energy + Delta-G solvation = -22861.751671 eV Core-core repulsion = 19622.341816 eV Total energy + Delta-G solvation = -3239.409854 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.19759 -37.73354 -36.38668 -34.61190 -34.06301 -31.94564 -30.08903 -29.34342 -27.77920 -27.41305 -25.90139 -24.56320 -22.21709 -21.87202 -19.96960 -19.46488 -18.59496 -17.84681 -16.70861 -16.34681 -15.79904 -14.93552 -14.64518 -14.51406 -14.21832 -13.80291 -13.59524 -13.50651 -13.28771 -13.15489 -12.91596 -12.66122 -12.52572 -12.25878 -11.74893 -11.74075 -11.43958 -11.34661 -11.09522 -10.79011 -10.71833 -10.45008 -10.23455 -10.00985 -9.95813 -9.72793 -9.52252 -9.28940 -8.83823 -8.51716 -8.38624 -6.66289 -5.78079 -3.20125 1.87497 2.92951 3.37547 3.38547 3.45566 3.47921 4.08506 4.50754 4.68483 4.73346 4.88317 5.17046 5.24921 5.35962 5.41348 5.45803 5.50130 5.54746 5.58724 5.64715 5.67851 5.79770 5.93752 6.03252 6.11413 6.31126 6.32943 6.40320 6.42201 6.55272 6.62603 6.64121 6.71631 6.83393 6.92857 7.02634 7.11647 7.34582 7.64028 7.81094 8.11417 8.46336 8.78871 9.22498 9.85813 10.43099 11.30854 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.035774 B = 0.003514 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.497595 B = 7966.218841 C = 8163.326729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.131 4.131 3 C -0.123 4.123 4 C 0.166 3.834 5 N -0.634 5.634 6 C 0.081 3.919 7 C 0.704 3.296 8 O -0.586 6.586 9 N -0.739 5.739 10 C 0.168 3.832 11 C -0.138 4.138 12 C 0.148 3.852 13 N -0.593 5.593 14 C -0.251 4.251 15 H 0.066 0.934 16 C 0.001 3.999 17 N -0.903 5.903 18 Si 0.902 3.098 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.289 1.289 22 C 0.175 3.825 23 C -0.146 4.146 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.390 0.610 35 H 0.081 0.919 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.020 0.980 39 H 0.055 0.945 40 H 0.253 0.747 41 H 0.091 0.909 42 H 0.021 0.979 43 H 0.058 0.942 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.092 -2.597 12.110 21.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.132 4.132 3 C -0.180 4.180 4 C 0.043 3.957 5 N -0.372 5.372 6 C -0.063 4.063 7 C 0.405 3.595 8 O -0.463 6.463 9 N -0.393 5.393 10 C 0.064 3.936 11 C -0.178 4.178 12 C 0.021 3.979 13 N -0.316 5.316 14 C -0.380 4.380 15 H 0.084 0.916 16 C -0.197 4.197 17 N -0.548 5.548 18 Si 0.732 3.268 19 H -0.203 1.203 20 H -0.217 1.217 21 H -0.216 1.216 22 C 0.048 3.952 23 C -0.186 4.186 24 H 0.114 0.886 25 H 0.113 0.887 26 H 0.098 0.902 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.225 0.775 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.038 0.962 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.109 0.891 42 H 0.039 0.961 43 H 0.077 0.923 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.345 -2.199 12.500 20.694 hybrid contribution -0.420 -0.260 -1.284 1.376 sum -16.765 -2.459 11.216 20.320 Atomic orbital electron populations 1.23659 0.95187 1.01627 1.02623 1.22257 0.95449 0.96842 0.98647 1.20886 1.01884 0.94026 1.01166 1.20331 0.99950 0.93041 0.82387 1.47049 1.19174 1.56454 1.14501 1.21682 0.93979 0.94858 0.95764 1.15951 0.81326 0.80071 0.82113 1.90887 1.50825 1.43517 1.61119 1.45691 1.23426 1.57716 1.12497 1.20971 0.83321 0.94221 0.95085 1.22430 1.00232 0.95893 0.99294 1.20875 0.91856 0.92989 0.92223 1.44103 1.76268 1.02021 1.09200 1.19240 1.16095 1.13488 0.89222 0.91626 1.25055 0.95527 1.00596 0.98540 1.70037 1.19895 1.30860 1.33965 0.86231 0.77431 0.77425 0.85744 1.20274 1.21740 1.21595 1.20735 0.89633 0.86118 0.98685 1.22533 1.02234 0.97162 0.96637 0.88559 0.88716 0.90246 0.92084 0.92015 0.90376 0.89127 0.92718 0.91123 0.91461 0.77504 0.90088 0.92703 0.92600 0.96167 0.92677 0.93680 0.89085 0.96066 0.92324 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.64 13.93 29.02 0.40 -1.24 16 2 C -0.13 -1.35 5.63 -101.07 -0.57 -1.92 16 3 C -0.12 -1.40 10.05 36.00 0.36 -1.04 16 4 C 0.17 1.74 5.48 -5.19 -0.03 1.71 16 5 N -0.63 -7.42 2.86 -188.74 -0.54 -7.96 16 6 C 0.08 0.65 10.20 59.85 0.61 1.26 16 7 C 0.70 10.93 8.24 -86.93 -0.72 10.21 16 8 O -0.59 -11.16 14.33 5.28 0.08 -11.08 16 9 N -0.74 -10.96 4.94 -58.48 -0.29 -11.25 16 10 C 0.17 3.01 2.42 -67.73 -0.16 2.85 16 11 C -0.14 -2.60 5.68 -26.45 -0.15 -2.75 16 12 C 0.15 3.24 6.50 -3.71 -0.02 3.21 16 13 N -0.59 -14.98 2.99 -172.32 -0.52 -15.49 16 14 C -0.25 -6.90 9.58 -15.06 -0.14 -7.05 16 15 H 0.07 1.78 7.89 -52.48 -0.41 1.37 16 16 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 17 N -0.90 -26.15 11.20 55.49 0.62 -25.53 16 18 Si 0.90 21.60 29.59 -169.99 -5.03 16.57 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 C 0.17 4.14 5.30 -3.71 -0.02 4.12 16 23 C -0.15 -2.71 5.55 -26.61 -0.15 -2.85 16 24 H 0.10 0.77 8.05 -52.48 -0.42 0.35 16 25 H 0.09 0.66 7.99 -52.49 -0.42 0.24 16 26 H 0.08 1.10 6.71 -51.92 -0.35 0.76 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.61 7.92 -51.93 -0.41 0.20 16 30 H 0.09 1.09 7.42 -51.93 -0.39 0.71 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 33 H 0.07 0.53 6.36 -51.93 -0.33 0.20 16 34 H 0.39 4.78 6.33 -40.82 -0.26 4.52 16 35 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.05 1.18 7.93 -51.93 -0.41 0.77 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.09 2.39 6.06 -51.93 -0.31 2.07 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 350.62 15.07 5.28 5.28 Total: -1.00 -31.59 350.62 -8.53 -40.12 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -7.47 Total: 2.87 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -0.67 Total: 6.46 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: -0.72 Total: -60.23 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.08 Total: -11.08 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.59 -8.53 -40.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611512327.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.545 kcal (2) G-P(sol) polarization free energy of solvation -31.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds