Wall clock time and date at job start Tue Mar 31 2020 05:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00282 * 2 1 4 4 H 1.48499 * 109.47247 * 240.00148 * 3 2 1 5 5 H 1.48503 * 109.47320 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47268 * 120.00202 * 3 2 1 7 7 C 1.37875 * 119.99615 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99946 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00287 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47005 * 179.97438 * 9 7 2 11 11 N 1.46510 * 109.46983 * 179.97438 * 10 9 7 12 12 C 1.34774 * 119.99876 * 180.02562 * 11 10 9 13 13 O 1.21586 * 120.00357 * 0.02562 * 12 11 10 14 14 N 1.34778 * 119.99510 * 180.02562 * 12 11 10 15 15 C 1.46507 * 119.99774 * 179.97438 * 14 12 11 16 16 H 1.09009 * 110.28022 * 35.40301 * 15 14 12 17 17 C 1.54254 * 110.32399 * 273.27471 * 15 14 12 18 18 C 1.54386 * 105.05693 * 241.09968 * 17 15 14 19 19 N 1.48556 * 104.59104 * 23.85721 * 18 17 15 20 20 C 1.46902 * 110.99762 * 200.95615 * 19 18 17 21 21 C 1.52995 * 109.47498 * 175.60077 * 20 19 18 22 22 C 1.53004 * 117.49784 * 243.47170 * 21 20 19 23 23 C 1.52996 * 59.99838 * 252.50534 * 22 21 20 24 24 C 1.48551 * 104.22396 * 320.51078 * 19 18 17 25 25 H 0.97006 * 119.99836 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46933 * 60.00182 * 9 7 2 27 27 H 1.08997 * 109.46843 * 299.99998 * 9 7 2 28 28 H 1.09001 * 109.47466 * 60.00514 * 10 9 7 29 29 H 1.08997 * 109.47468 * 299.99798 * 10 9 7 30 30 H 0.97000 * 119.99918 * 0.02562 * 11 10 9 31 31 H 0.96991 * 120.00394 * 359.72402 * 14 12 11 32 32 H 1.08996 * 110.32394 * 0.02562 * 17 15 14 33 33 H 1.09003 * 110.32058 * 122.10740 * 17 15 14 34 34 H 1.09005 * 110.40536 * 142.63241 * 18 17 15 35 35 H 1.08996 * 110.41358 * 265.07474 * 18 17 15 36 36 H 1.09003 * 109.46877 * 295.60351 * 20 19 18 37 37 H 1.09003 * 109.47293 * 55.59905 * 20 19 18 38 38 H 1.09004 * 115.54882 * 29.17793 * 21 20 19 39 39 H 1.08993 * 117.49975 * 0.02562 * 22 21 20 40 40 H 1.09007 * 117.49551 * 145.01812 * 22 21 20 41 41 H 1.09004 * 117.50334 * 252.50764 * 23 22 21 42 42 H 1.09003 * 117.49950 * 107.49015 * 23 22 21 43 43 H 1.09003 * 110.41605 * 280.70453 * 24 19 18 44 44 H 1.09003 * 110.41254 * 158.26048 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9309 0.0012 12 6 2.1864 -6.0980 0.0018 13 8 3.4023 -6.0981 0.0023 14 7 1.5124 -7.2652 0.0018 15 6 2.2449 -8.5340 0.0019 16 1 3.1556 -8.4445 0.5944 17 6 2.5844 -8.9568 -1.4421 18 6 1.8696 -10.3105 -1.6423 19 7 0.7600 -10.2974 -0.6546 20 6 0.2980 -11.6612 -0.3638 21 6 -0.7661 -11.6160 0.7346 22 6 -0.4445 -12.3119 2.0587 23 6 -1.4628 -12.9288 1.0978 24 6 1.3535 -9.6677 0.5528 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6239 -2.5567 0.8903 28 1 2.8718 -3.6044 0.8906 29 1 2.8718 -3.6044 -0.8894 30 1 0.5426 -4.9308 0.0011 31 1 0.5425 -7.2652 0.0055 32 1 2.2065 -8.2201 -2.1510 33 1 3.6617 -9.0750 -1.5586 34 1 1.4755 -10.3860 -2.6558 35 1 2.5522 -11.1350 -1.4364 36 1 -0.1291 -12.1001 -1.2656 37 1 1.1403 -12.2666 -0.0289 38 1 -1.3597 -10.7028 0.7767 39 1 0.5252 -12.8015 2.1475 40 1 -0.8266 -11.8564 2.9724 41 1 -2.5147 -12.8793 1.3793 42 1 -1.1632 -13.8248 0.5542 43 1 1.9553 -10.3916 1.1024 44 1 0.5709 -9.2592 1.1922 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612131979.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:19 Heat of formation + Delta-G solvation = -9.454376 kcal Electronic energy + Delta-G solvation = -21584.814248 eV Core-core repulsion = 18344.455728 eV Total energy + Delta-G solvation = -3240.358520 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.09758 -38.92368 -37.26960 -34.85566 -33.97348 -32.78467 -31.08305 -29.52663 -28.37650 -26.12890 -24.57173 -22.75625 -21.81178 -21.46538 -20.92587 -20.55320 -20.02712 -18.03820 -16.72735 -16.50250 -16.13052 -15.45690 -15.24006 -14.85567 -14.72557 -14.48480 -14.15376 -13.72876 -13.46949 -13.24162 -12.95905 -12.51567 -12.29767 -12.17001 -12.00560 -11.88589 -11.58447 -11.29881 -11.15558 -11.01821 -10.97181 -10.66402 -10.62064 -10.30625 -10.26731 -9.87386 -9.50983 -9.23609 -9.00885 -8.76127 -8.44346 -8.18601 -6.05983 -4.08520 3.11897 3.33690 3.37263 3.37968 3.41200 3.63351 3.66059 4.29162 4.35661 4.42660 4.53833 4.62208 4.73066 4.76389 4.95941 5.00858 5.08254 5.20983 5.23399 5.26962 5.30968 5.38684 5.45412 5.51706 5.59127 5.67974 5.73486 5.85385 5.87115 6.06990 6.34796 6.44697 6.49233 6.70162 6.77054 6.83353 7.06943 7.34027 7.61627 7.67820 7.93451 8.30230 8.51939 8.96559 9.07780 9.55940 11.05686 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031643 B = 0.002545 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.672445 B =10998.919561 C =11503.843414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.141 3.859 11 N -0.739 5.739 12 C 0.698 3.302 13 O -0.601 6.601 14 N -0.742 5.742 15 C 0.163 3.837 16 H 0.093 0.907 17 C -0.136 4.136 18 C 0.033 3.967 19 N -0.508 5.508 20 C 0.076 3.924 21 C -0.149 4.149 22 C -0.183 4.183 23 C -0.178 4.178 24 C 0.028 3.972 25 H 0.262 0.738 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.393 0.607 31 H 0.397 0.603 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.044 0.956 36 H 0.080 0.920 37 H 0.037 0.963 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.056 0.944 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.181 -26.555 0.458 26.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.559 4.559 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.018 3.982 11 N -0.392 5.392 12 C 0.398 3.602 13 O -0.480 6.480 14 N -0.398 5.398 15 C 0.056 3.944 16 H 0.111 0.889 17 C -0.175 4.175 18 C -0.095 4.095 19 N -0.232 5.232 20 C -0.052 4.052 21 C -0.167 4.167 22 C -0.220 4.220 23 C -0.215 4.215 24 C -0.100 4.100 25 H 0.072 0.928 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.226 0.774 31 H 0.231 0.769 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.062 0.938 36 H 0.098 0.902 37 H 0.055 0.945 38 H 0.131 0.869 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.074 0.926 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.658 -26.105 0.262 26.159 hybrid contribution 0.109 0.394 0.299 0.506 sum -1.549 -25.711 0.561 25.764 Atomic orbital electron populations 1.69951 1.06081 1.26926 1.50429 1.24996 0.94898 0.99386 0.95050 0.86568 0.79502 0.82660 0.78772 1.20115 1.21282 1.20124 1.21023 0.93229 0.90402 1.51283 0.92287 1.19317 0.94260 0.91074 0.97790 1.21570 0.95604 0.80488 1.00550 1.45534 1.09845 1.05330 1.78531 1.16090 0.85657 0.80555 0.77890 1.90875 1.11807 1.86706 1.58579 1.45178 1.09420 1.04060 1.81150 1.21390 0.94903 0.82085 0.95977 0.88908 1.22809 1.00518 0.96476 0.97727 1.23137 0.91870 0.97193 0.97300 1.65427 1.31966 1.17572 1.08206 1.21842 0.95993 0.89642 0.97761 1.22292 1.01276 0.97228 0.95914 1.23070 1.00389 1.04383 0.94192 1.22942 0.98183 0.96705 1.03708 1.23386 0.97704 0.95811 0.93098 0.92829 0.95986 0.95987 0.92872 0.92862 0.77396 0.76930 0.90186 0.90660 0.89941 0.93780 0.90202 0.94521 0.86884 0.89031 0.88744 0.88668 0.88917 0.92551 0.89241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 10 C 0.14 3.09 5.61 -4.04 -0.02 3.07 16 11 N -0.74 -13.39 5.56 -65.22 -0.36 -13.75 16 12 C 0.70 12.42 8.56 -86.92 -0.74 11.67 16 13 O -0.60 -13.00 16.04 5.29 0.08 -12.92 16 14 N -0.74 -9.71 5.00 -57.32 -0.29 -9.99 16 15 C 0.16 1.87 3.37 -66.55 -0.22 1.65 16 16 H 0.09 1.21 7.63 -51.92 -0.40 0.81 16 17 C -0.14 -1.46 6.78 -25.35 -0.17 -1.63 16 18 C 0.03 0.28 6.49 -2.18 -0.01 0.27 16 19 N -0.51 -4.43 5.45 -229.97 -1.25 -5.68 16 20 C 0.08 0.56 5.19 -3.83 -0.02 0.54 16 21 C -0.15 -1.05 4.99 -90.62 -0.45 -1.50 16 22 C -0.18 -1.18 10.18 -26.73 -0.27 -1.45 16 23 C -0.18 -1.09 10.25 -26.73 -0.27 -1.36 16 24 C 0.03 0.25 5.33 -2.19 -0.01 0.24 16 25 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.39 6.18 8.49 -40.82 -0.35 5.83 16 31 H 0.40 4.37 8.57 -40.82 -0.35 4.02 16 32 H 0.08 0.99 7.95 -51.93 -0.41 0.58 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.04 0.34 7.91 -51.93 -0.41 -0.07 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.04 0.26 7.71 -51.93 -0.40 -0.14 16 38 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.09 0.56 8.03 -51.93 -0.42 0.15 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.47 7.97 -51.93 -0.41 0.05 16 44 H 0.09 0.79 7.83 -51.93 -0.41 0.38 16 LS Contribution 360.29 15.07 5.43 5.43 Total: -1.00 -31.89 360.29 -11.18 -43.07 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -7.75 Total: 4.63 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -2.76 Total: -1.70 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -1.17 Total: -55.08 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.08 Total: -12.92 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.89 -11.18 -43.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612131979.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.616 kcal (2) G-P(sol) polarization free energy of solvation -31.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds