Wall clock time and date at job start Tue Mar 31 2020 05:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48510 * 109.46866 * 269.99977 * 3 2 1 5 5 H 1.48502 * 109.47245 * 29.99762 * 3 2 1 6 6 H 1.48494 * 109.47271 * 149.99899 * 3 2 1 7 7 C 1.37875 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.46883 * 179.97438 * 10 9 7 12 12 C 1.34775 * 119.99531 * 179.97438 * 11 10 9 13 13 O 1.21589 * 120.00042 * 0.02562 * 12 11 10 14 14 N 1.34775 * 120.00068 * 179.97438 * 12 11 10 15 15 C 1.46500 * 120.00474 * 179.97438 * 14 12 11 16 16 H 1.09001 * 110.27364 * 325.71103 * 15 14 12 17 17 C 1.54596 * 110.30470 * 87.79534 * 15 14 12 18 18 C 1.55195 * 102.80405 * 96.98278 * 17 15 14 19 19 N 1.48539 * 103.23467 * 37.43030 * 18 17 15 20 20 C 1.46896 * 110.99817 * 200.25313 * 19 18 17 21 21 C 1.52992 * 109.47559 * 307.40095 * 20 19 18 22 22 C 1.53007 * 117.50089 * 243.62034 * 21 20 19 23 23 C 1.53000 * 60.00114 * 252.51129 * 22 21 20 24 24 C 1.47897 * 105.82074 * 320.77558 * 19 18 17 25 25 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47612 * 59.99944 * 9 7 2 27 27 H 1.09001 * 109.47122 * 299.99775 * 9 7 2 28 28 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 29 29 H 1.08993 * 109.46955 * 59.99842 * 10 9 7 30 30 H 0.96992 * 119.99966 * 359.97438 * 11 10 9 31 31 H 0.96998 * 119.99765 * 0.02562 * 14 12 11 32 32 H 1.09005 * 110.72497 * 215.31751 * 17 15 14 33 33 H 1.09007 * 110.72698 * 338.60100 * 17 15 14 34 34 H 1.09005 * 110.68280 * 278.98887 * 18 17 15 35 35 H 1.08996 * 110.78768 * 155.92989 * 18 17 15 36 36 H 1.08999 * 109.47140 * 67.40468 * 20 19 18 37 37 H 1.09009 * 109.46887 * 187.39717 * 20 19 18 38 38 H 1.08997 * 115.55612 * 29.32906 * 21 20 19 39 39 H 1.09006 * 117.49348 * 0.02562 * 22 21 20 40 40 H 1.08991 * 117.49955 * 145.01870 * 22 21 20 41 41 H 1.08994 * 117.49607 * 252.51000 * 23 22 21 42 42 H 1.08995 * 117.51930 * 107.47954 * 23 22 21 43 43 H 1.09005 * 109.91493 * 265.97557 * 24 19 18 44 44 H 1.08997 * 110.08397 * 144.77505 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5127 -4.9308 0.0012 12 6 2.1866 -6.0980 0.0007 13 8 3.4025 -6.0980 0.0003 14 7 1.5128 -7.2652 0.0018 15 6 2.2452 -8.5340 0.0008 16 1 3.1648 -8.4387 -0.5766 17 6 2.5639 -8.9706 1.4492 18 6 1.4190 -9.9688 1.7673 19 7 1.2238 -10.6839 0.4800 20 6 -0.1006 -11.3168 0.4250 21 6 -0.3042 -12.1827 1.6698 22 6 -0.4671 -13.6900 1.4630 23 6 -1.6742 -12.8373 1.8587 24 6 1.3657 -9.6585 -0.5763 25 1 -0.4849 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 2.8719 -3.6044 -0.8895 29 1 2.8719 -3.6043 0.8905 30 1 0.5428 -4.9308 0.0019 31 1 0.5428 -7.2652 0.0025 32 1 3.5335 -9.4663 1.4981 33 1 2.5317 -8.1163 2.1256 34 1 0.5119 -9.4360 2.0527 35 1 1.7185 -10.6637 2.5518 36 1 -0.8704 -10.5460 0.3888 37 1 -0.1686 -11.9404 -0.4665 38 1 0.2228 -11.8513 2.5645 39 1 -0.4288 -14.0646 0.4401 40 1 -0.0470 -14.3503 2.2215 41 1 -2.0482 -12.9367 2.8776 42 1 -2.4306 -12.6506 1.0964 43 1 0.3858 -9.2631 -0.8440 44 1 1.8444 -10.0903 -1.4552 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612131981.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:22 Heat of formation + Delta-G solvation = -7.529883 kcal Electronic energy + Delta-G solvation = -21508.519063 eV Core-core repulsion = 18268.243995 eV Total energy + Delta-G solvation = -3240.275068 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.18882 -38.96688 -37.29416 -34.90130 -34.02085 -32.82381 -31.06505 -29.55998 -28.58245 -25.99082 -24.57797 -22.75860 -22.33731 -21.42750 -20.85326 -20.64138 -19.80487 -18.06712 -16.87547 -16.48067 -16.22729 -15.70063 -15.04723 -14.80797 -14.68147 -14.51071 -14.10237 -13.80127 -13.72757 -13.24009 -13.14456 -12.76578 -12.28037 -11.96993 -11.90197 -11.81136 -11.55152 -11.31515 -11.18612 -11.11841 -11.02507 -10.64239 -10.61834 -10.41639 -10.31364 -9.92715 -9.55562 -9.26076 -9.03256 -8.71810 -8.48503 -8.25202 -6.09154 -4.11687 2.98177 3.29860 3.34971 3.36095 3.40781 3.57047 3.75663 4.21048 4.38319 4.39908 4.54778 4.62142 4.68285 4.69667 4.88081 5.00411 5.05906 5.21121 5.23707 5.27995 5.28047 5.30696 5.39508 5.52833 5.64120 5.74106 5.76734 5.87229 5.92931 5.99130 6.30186 6.40283 6.41978 6.67819 6.73849 6.78771 7.00279 7.22613 7.56927 7.63388 7.90147 8.26052 8.43230 8.93145 9.00314 9.53044 11.02532 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.037286 B = 0.002424 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.766573 B =11546.256813 C =11969.049308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.739 5.739 12 C 0.699 3.301 13 O -0.596 6.596 14 N -0.748 5.748 15 C 0.155 3.845 16 H 0.099 0.901 17 C -0.134 4.134 18 C 0.034 3.966 19 N -0.512 5.512 20 C 0.077 3.923 21 C -0.154 4.154 22 C -0.174 4.174 23 C -0.182 4.182 24 C 0.030 3.970 25 H 0.262 0.738 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.392 0.608 31 H 0.391 0.609 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.046 0.954 35 H 0.082 0.918 36 H 0.040 0.960 37 H 0.077 0.923 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.053 0.947 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.568 -25.620 2.147 25.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.017 3.983 11 N -0.392 5.392 12 C 0.399 3.601 13 O -0.474 6.474 14 N -0.405 5.405 15 C 0.049 3.951 16 H 0.117 0.883 17 C -0.173 4.173 18 C -0.093 4.093 19 N -0.237 5.237 20 C -0.051 4.051 21 C -0.172 4.172 22 C -0.210 4.210 23 C -0.220 4.220 24 C -0.098 4.098 25 H 0.071 0.929 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.225 0.775 31 H 0.225 0.775 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.064 0.936 35 H 0.101 0.899 36 H 0.058 0.942 37 H 0.096 0.904 38 H 0.127 0.873 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.071 0.929 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.191 -25.877 2.065 26.052 hybrid contribution -1.277 1.538 0.110 2.002 sum -3.467 -24.340 2.175 24.682 Atomic orbital electron populations 1.69958 1.06091 1.26843 1.50497 1.25003 0.94907 0.99432 0.95029 0.86503 0.79841 0.82960 0.78195 1.20561 1.21196 1.19706 1.21056 0.93283 0.90354 1.51190 0.92200 1.19325 0.94255 0.91113 0.97763 1.21590 0.95624 0.80405 1.00649 1.45550 1.09809 1.05374 1.78497 1.16071 0.85693 0.80468 0.77913 1.90891 1.11699 1.86614 1.58242 1.45330 1.09067 1.04536 1.81558 1.21512 0.95615 0.81460 0.96539 0.88306 1.22995 0.98803 0.98757 0.96749 1.23322 0.97921 0.95548 0.92549 1.64831 1.28477 1.27378 1.02975 1.21892 0.89338 0.96913 0.96935 1.22378 1.00203 0.94756 0.99871 1.22994 1.02036 0.93349 1.02670 1.22982 0.91406 1.04854 1.02724 1.23182 0.99368 0.91456 0.95804 0.92876 0.96015 0.96005 0.92773 0.92790 0.77474 0.77536 0.89956 0.90280 0.93597 0.89920 0.94184 0.90446 0.87252 0.88728 0.88905 0.88754 0.88820 0.92926 0.89070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 8 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.14 3.03 5.61 -4.04 -0.02 3.01 16 11 N -0.74 -13.08 5.56 -65.22 -0.36 -13.44 16 12 C 0.70 12.14 8.56 -86.92 -0.74 11.40 16 13 O -0.60 -12.75 16.02 5.29 0.08 -12.67 16 14 N -0.75 -9.37 5.08 -57.35 -0.29 -9.66 16 15 C 0.16 1.76 3.31 -66.58 -0.22 1.54 16 16 H 0.10 1.30 7.60 -51.93 -0.39 0.91 16 17 C -0.13 -1.43 6.80 -24.73 -0.17 -1.60 16 18 C 0.03 0.30 5.36 -1.75 -0.01 0.29 16 19 N -0.51 -4.53 5.40 -230.29 -1.24 -5.77 16 20 C 0.08 0.59 5.31 -3.83 -0.02 0.57 16 21 C -0.15 -1.10 5.60 -90.62 -0.51 -1.61 16 22 C -0.17 -1.12 10.18 -26.73 -0.27 -1.39 16 23 C -0.18 -1.14 10.25 -26.73 -0.27 -1.41 16 24 C 0.03 0.27 6.47 -2.76 -0.02 0.25 16 25 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.39 5.97 8.49 -40.82 -0.35 5.62 16 31 H 0.39 3.92 8.32 -40.82 -0.34 3.58 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.97 8.05 -51.93 -0.42 0.56 16 34 H 0.05 0.41 8.02 -51.93 -0.42 -0.01 16 35 H 0.08 0.68 7.08 -51.93 -0.37 0.31 16 36 H 0.04 0.31 7.81 -51.93 -0.41 -0.10 16 37 H 0.08 0.57 7.88 -51.92 -0.41 0.16 16 38 H 0.11 0.82 6.14 -51.93 -0.32 0.50 16 39 H 0.09 0.58 8.03 -51.93 -0.42 0.16 16 40 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.05 0.43 7.04 -51.93 -0.37 0.07 16 44 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 357.09 15.07 5.38 5.38 Total: -1.00 -31.81 357.09 -11.07 -42.87 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -7.54 Total: 4.34 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -2.81 Total: -2.04 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: -1.16 Total: -54.33 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.08 Total: -12.67 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.81 -11.07 -42.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612131981.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.344 kcal (2) G-P(sol) polarization free energy of solvation -31.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds