Wall clock time and date at job start Tue Mar 31 2020 05:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48510 * 109.46866 * 269.99977 * 3 2 1 5 5 H 1.48502 * 109.47245 * 29.99762 * 3 2 1 6 6 H 1.48494 * 109.47271 * 149.99899 * 3 2 1 7 7 C 1.37875 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.46883 * 179.97438 * 10 9 7 12 12 C 1.34775 * 119.99531 * 179.97438 * 11 10 9 13 13 O 1.21589 * 120.00042 * 0.02562 * 12 11 10 14 14 N 1.34775 * 120.00068 * 179.97438 * 12 11 10 15 15 C 1.46500 * 120.00474 * 179.97438 * 14 12 11 16 16 H 1.09001 * 110.27364 * 325.71103 * 15 14 12 17 17 C 1.54596 * 110.30470 * 87.79534 * 15 14 12 18 18 C 1.55195 * 102.80405 * 96.98278 * 17 15 14 19 19 N 1.48539 * 103.23467 * 37.43030 * 18 17 15 20 20 C 1.46896 * 110.99817 * 200.25313 * 19 18 17 21 21 C 1.52992 * 109.47559 * 307.40095 * 20 19 18 22 22 C 1.53007 * 117.50089 * 243.62034 * 21 20 19 23 23 C 1.53000 * 60.00114 * 252.51129 * 22 21 20 24 24 C 1.47897 * 105.82074 * 320.77558 * 19 18 17 25 25 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47612 * 59.99944 * 9 7 2 27 27 H 1.09001 * 109.47122 * 299.99775 * 9 7 2 28 28 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 29 29 H 1.08993 * 109.46955 * 59.99842 * 10 9 7 30 30 H 0.96992 * 119.99966 * 359.97438 * 11 10 9 31 31 H 0.96998 * 119.99765 * 0.02562 * 14 12 11 32 32 H 1.09005 * 110.72497 * 215.31751 * 17 15 14 33 33 H 1.09007 * 110.72698 * 338.60100 * 17 15 14 34 34 H 1.09005 * 110.68280 * 278.98887 * 18 17 15 35 35 H 1.08996 * 110.78768 * 155.92989 * 18 17 15 36 36 H 1.08999 * 109.47140 * 67.40468 * 20 19 18 37 37 H 1.09009 * 109.46887 * 187.39717 * 20 19 18 38 38 H 1.08997 * 115.55612 * 29.32906 * 21 20 19 39 39 H 1.09006 * 117.49348 * 0.02562 * 22 21 20 40 40 H 1.08991 * 117.49955 * 145.01870 * 22 21 20 41 41 H 1.08994 * 117.49607 * 252.51000 * 23 22 21 42 42 H 1.08995 * 117.51930 * 107.47954 * 23 22 21 43 43 H 1.09005 * 109.91493 * 265.97557 * 24 19 18 44 44 H 1.08997 * 110.08397 * 144.77505 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5127 -4.9308 0.0012 12 6 2.1866 -6.0980 0.0007 13 8 3.4025 -6.0980 0.0003 14 7 1.5128 -7.2652 0.0018 15 6 2.2452 -8.5340 0.0008 16 1 3.1648 -8.4387 -0.5766 17 6 2.5639 -8.9706 1.4492 18 6 1.4190 -9.9688 1.7673 19 7 1.2238 -10.6839 0.4800 20 6 -0.1006 -11.3168 0.4250 21 6 -0.3042 -12.1827 1.6698 22 6 -0.4671 -13.6900 1.4630 23 6 -1.6742 -12.8373 1.8587 24 6 1.3657 -9.6585 -0.5763 25 1 -0.4849 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 2.8719 -3.6044 -0.8895 29 1 2.8719 -3.6043 0.8905 30 1 0.5428 -4.9308 0.0019 31 1 0.5428 -7.2652 0.0025 32 1 3.5335 -9.4663 1.4981 33 1 2.5317 -8.1163 2.1256 34 1 0.5119 -9.4360 2.0527 35 1 1.7185 -10.6637 2.5518 36 1 -0.8704 -10.5460 0.3888 37 1 -0.1686 -11.9404 -0.4665 38 1 0.2228 -11.8513 2.5645 39 1 -0.4288 -14.0646 0.4401 40 1 -0.0470 -14.3503 2.2215 41 1 -2.0482 -12.9367 2.8776 42 1 -2.4306 -12.6506 1.0964 43 1 0.3858 -9.2631 -0.8440 44 1 1.8444 -10.0903 -1.4552 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612131981.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:21 Heat of formation + Delta-G solvation = -29.878884 kcal Electronic energy + Delta-G solvation = -21509.488188 eV Core-core repulsion = 18268.243995 eV Total energy + Delta-G solvation = -3241.244193 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.32286 -39.97071 -37.97167 -36.58007 -35.18101 -34.76912 -32.17591 -31.08330 -29.55308 -26.98665 -26.26371 -23.34609 -23.20446 -22.85309 -22.12556 -21.73333 -20.58068 -19.45938 -18.43689 -17.71386 -17.21496 -16.70130 -16.50138 -16.41323 -15.79783 -15.43800 -15.14415 -15.05972 -14.78574 -14.63513 -14.28825 -14.01189 -13.46324 -13.21088 -13.01678 -12.81944 -12.62160 -12.52145 -12.41100 -12.32714 -12.22562 -12.01285 -11.85474 -11.66553 -11.49627 -11.20296 -11.15490 -10.92742 -10.60519 -10.33378 -9.74180 -9.39412 -8.24127 -6.34225 1.42024 1.42584 1.53956 1.72899 2.15762 2.41304 2.77612 3.10706 3.10832 3.40551 3.47915 3.66510 3.93677 4.03634 4.05523 4.18699 4.28352 4.38705 4.45413 4.47150 4.52519 4.61237 4.68205 4.71539 4.82714 4.86205 4.87096 4.99133 5.02445 5.06753 5.12055 5.28724 5.31542 5.33576 5.49913 5.52084 5.59531 5.78776 5.86367 5.99664 6.06403 6.17369 6.78991 7.11642 7.35055 7.60006 8.87770 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.037286 B = 0.002424 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.766573 B =11546.256813 C =11969.049308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.161 3.839 11 N -0.734 5.734 12 C 0.699 3.301 13 O -0.637 6.637 14 N -0.726 5.726 15 C 0.151 3.849 16 H 0.079 0.921 17 C -0.132 4.132 18 C 0.043 3.957 19 N -0.518 5.518 20 C 0.079 3.921 21 C -0.164 4.164 22 C -0.175 4.175 23 C -0.178 4.178 24 C 0.039 3.961 25 H 0.266 0.734 26 H 0.009 0.991 27 H 0.008 0.992 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.406 0.594 31 H 0.407 0.593 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.048 0.952 35 H 0.091 0.909 36 H 0.043 0.957 37 H 0.082 0.918 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.065 0.935 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.124 -26.479 2.112 26.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.036 3.964 11 N -0.388 5.388 12 C 0.399 3.601 13 O -0.519 6.519 14 N -0.383 5.383 15 C 0.045 3.955 16 H 0.097 0.903 17 C -0.172 4.172 18 C -0.084 4.084 19 N -0.242 5.242 20 C -0.049 4.049 21 C -0.182 4.182 22 C -0.211 4.211 23 C -0.215 4.215 24 C -0.089 4.089 25 H 0.074 0.926 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.241 0.759 31 H 0.244 0.756 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.109 0.891 36 H 0.061 0.939 37 H 0.101 0.899 38 H 0.123 0.877 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.083 0.917 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.796 -26.788 2.030 27.010 hybrid contribution -1.127 1.723 0.128 2.063 sum -3.923 -25.065 2.158 25.462 Atomic orbital electron populations 1.70058 1.07510 1.27980 1.51067 1.25877 0.95825 1.03107 0.94454 0.85438 0.78619 0.78427 0.78524 1.19755 1.20513 1.19082 1.21468 0.93615 0.91908 1.51438 0.92294 1.19124 0.94220 0.91658 0.96323 1.21065 0.94601 0.81125 0.99573 1.45228 1.10345 1.04468 1.78786 1.16156 0.85182 0.81218 0.77549 1.90866 1.13680 1.87267 1.60058 1.45143 1.09844 1.03470 1.79846 1.21629 0.95430 0.81394 0.97015 0.90304 1.22930 0.99774 0.98639 0.95824 1.23247 0.97083 0.95176 0.92919 1.64856 1.29535 1.27139 1.02681 1.21912 0.88566 0.96997 0.97416 1.22364 1.01084 0.95202 0.99547 1.23058 1.02094 0.92966 1.03026 1.23040 0.91169 1.04133 1.03202 1.23113 0.99433 0.90507 0.95880 0.92554 0.97310 0.97328 0.93835 0.93905 0.75860 0.75645 0.89967 0.92047 0.93344 0.89085 0.93905 0.89950 0.87672 0.88411 0.88575 0.88286 0.88319 0.91655 0.88310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.33 13.29 21.45 0.28 -54.04 16 2 C 0.01 0.34 5.46 84.65 0.46 0.80 16 3 Si 0.97 43.75 29.54 68.60 2.03 45.77 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.55 -30.65 9.11 25.60 0.23 -30.41 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.02 1.23 5.09 29.85 0.15 1.38 16 10 C 0.16 7.04 5.61 86.38 0.48 7.52 16 11 N -0.73 -25.80 5.56 -478.52 -2.66 -28.46 16 12 C 0.70 24.12 8.56 179.06 1.53 25.65 16 13 O -0.64 -27.57 16.02 -4.00 -0.06 -27.63 16 14 N -0.73 -17.43 5.08 -453.62 -2.30 -19.74 16 15 C 0.15 3.30 3.31 45.87 0.15 3.45 16 16 H 0.08 2.08 7.60 -2.39 -0.02 2.06 16 17 C -0.13 -2.76 6.80 31.89 0.22 -2.54 16 18 C 0.04 0.70 5.36 86.74 0.47 1.17 16 19 N -0.52 -8.14 5.40 -882.50 -4.76 -12.90 16 20 C 0.08 1.03 5.31 86.30 0.46 1.49 16 21 C -0.16 -2.04 5.60 -10.79 -0.06 -2.10 16 22 C -0.17 -1.93 10.18 30.60 0.31 -1.61 16 23 C -0.18 -1.87 10.25 30.60 0.31 -1.56 16 24 C 0.04 0.62 6.47 86.44 0.56 1.18 16 25 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 26 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.41 12.04 8.49 -92.71 -0.79 11.25 16 31 H 0.41 7.37 8.32 -92.71 -0.77 6.59 16 32 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.06 1.51 8.05 -2.38 -0.02 1.49 16 34 H 0.05 0.77 8.02 -2.38 -0.02 0.75 16 35 H 0.09 1.35 7.08 -2.39 -0.02 1.33 16 36 H 0.04 0.54 7.81 -2.39 -0.02 0.53 16 37 H 0.08 1.01 7.88 -2.38 -0.02 0.99 16 38 H 0.11 1.40 6.14 -2.39 -0.01 1.38 16 39 H 0.10 1.01 8.03 -2.38 -0.02 0.99 16 40 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.07 0.89 7.04 -2.38 -0.02 0.88 16 44 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -67.63 357.09 -2.76 -70.39 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: -0.57 Total: 22.18 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 5.28 Total: 4.43 kcal Atomic # 7 Polarization: -105.70 SS G_CDS: -9.44 Total: -115.14 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.06 Total: -27.63 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -67.63 -2.76 -70.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612131981.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.512 kcal (2) G-P(sol) polarization free energy of solvation -67.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds