Wall clock time and date at job start Tue Mar 31 2020 05:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.47157 * 2 1 4 4 C 1.34940 * 126.03656 * 124.97681 * 3 2 1 5 5 C 1.35319 * 107.74626 * 179.97438 * 4 3 2 6 6 C 1.50695 * 126.04035 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.47141 * 269.96717 * 6 5 4 8 8 N 1.46903 * 109.47298 * 180.02562 * 7 6 5 9 9 C 1.46898 * 111.00064 * 170.00004 * 8 7 6 10 10 C 1.50697 * 109.47151 * 296.25601 * 9 8 7 11 11 H 1.07999 * 120.00293 * 354.47325 * 10 9 8 12 12 C 1.37874 * 119.99750 * 174.47007 * 10 9 8 13 13 N 1.31511 * 120.00683 * 353.71847 * 12 10 9 14 14 Si 1.86807 * 119.99777 * 173.71733 * 12 10 9 15 15 H 1.48499 * 109.46835 * 65.00891 * 14 12 10 16 16 H 1.48497 * 109.47141 * 185.00269 * 14 12 10 17 17 H 1.48500 * 109.47463 * 305.00605 * 14 12 10 18 18 C 1.46906 * 110.99565 * 293.95576 * 8 7 6 19 19 C 1.53001 * 109.46609 * 161.02767 * 18 8 7 20 20 O 1.42901 * 109.47350 * 67.83202 * 19 18 8 21 21 C 1.42900 * 113.99768 * 180.62496 * 20 19 18 22 22 C 1.39873 * 107.91770 * 359.97438 * 5 4 3 23 23 N 1.30834 * 108.20434 * 0.02562 * 22 5 4 24 24 H 1.08998 * 109.46873 * 59.99899 * 1 2 3 25 25 H 1.08989 * 109.47593 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46818 * 300.00425 * 1 2 3 27 27 H 1.08994 * 109.46982 * 239.99989 * 2 1 3 28 28 H 1.08998 * 109.46873 * 120.00101 * 2 1 3 29 29 H 1.08001 * 126.13035 * 359.97438 * 4 3 2 30 30 H 1.08998 * 109.47351 * 29.96729 * 6 5 4 31 31 H 1.09003 * 109.47270 * 149.97097 * 6 5 4 32 32 H 1.08998 * 109.47008 * 300.00222 * 7 6 5 33 33 H 1.09003 * 109.46728 * 60.00048 * 7 6 5 34 34 H 1.09004 * 109.47047 * 56.25798 * 9 8 7 35 35 H 1.08998 * 109.47104 * 176.25517 * 9 8 7 36 36 H 0.96996 * 120.00865 * 179.97438 * 13 12 10 37 37 H 1.08997 * 109.46790 * 281.01946 * 18 8 7 38 38 H 1.08995 * 109.47330 * 41.02639 * 18 8 7 39 39 H 1.09002 * 109.46763 * 187.83463 * 19 18 8 40 40 H 1.09002 * 109.47074 * 307.83057 * 19 18 8 41 41 H 1.09001 * 109.47649 * 303.63240 * 21 20 19 42 42 H 1.09005 * 109.46921 * 63.63682 * 21 20 19 43 43 H 1.08995 * 109.47161 * 183.63369 * 21 20 19 44 44 H 1.07996 * 125.89472 * 180.26342 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8728 1.9212 0.8941 5 6 3.0720 3.2135 0.5458 6 6 3.9555 4.1996 1.2654 7 6 3.1404 4.9286 2.3355 8 7 4.0015 5.8903 3.0365 9 6 3.2087 6.7726 3.9031 10 6 2.2769 7.6020 3.0577 11 1 2.3355 7.5511 1.9805 12 6 1.3494 8.4258 3.6595 13 7 1.1929 8.3967 4.9649 14 14 0.3150 9.5834 2.6204 15 1 -0.5719 8.7912 1.7310 16 1 -0.5116 10.4402 3.5079 17 1 1.2062 10.4389 1.7963 18 6 5.0466 5.1993 3.8036 19 6 6.1780 6.1792 4.1213 20 8 5.7078 7.1684 5.0392 21 6 6.6882 8.1461 5.3926 22 6 2.3137 3.4720 -0.6008 23 7 1.6816 2.3744 -0.9288 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0275 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.3179 1.4130 1.7367 30 1 4.7827 3.6694 1.7372 31 1 4.3482 4.9239 0.5516 32 1 2.3132 5.4588 1.8636 33 1 2.7477 4.2043 3.0492 34 1 2.6271 6.1698 4.6006 35 1 3.8762 7.4301 4.4601 36 1 0.5406 8.9765 5.3883 37 1 4.6235 4.8192 4.7334 38 1 5.4392 4.3690 3.2167 39 1 7.0129 5.6380 4.5665 40 1 6.5077 6.6638 3.2023 41 1 7.5676 7.6479 5.8006 42 1 6.9708 8.7141 4.5062 43 1 6.2739 8.8221 6.1405 44 1 2.2623 4.4137 -1.1270 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616016009.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:23 Heat of formation + Delta-G solvation = 34.860367 kcal Electronic energy + Delta-G solvation = -22220.109265 eV Core-core repulsion = 18981.672376 eV Total energy + Delta-G solvation = -3238.436889 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.03390 -37.84914 -36.21347 -34.58919 -32.61146 -31.78484 -30.12877 -29.35000 -27.61920 -26.14214 -25.18224 -23.84116 -22.47201 -22.10073 -20.60014 -19.92209 -19.38073 -16.88360 -16.40503 -15.75833 -15.56953 -15.41158 -14.96266 -14.44577 -14.25544 -14.12243 -13.91151 -13.65564 -13.25413 -12.79722 -12.65997 -12.27007 -12.20756 -12.11563 -11.89588 -11.73316 -11.45397 -11.19881 -10.97886 -10.82631 -10.68660 -10.59983 -10.42742 -10.19812 -9.93107 -9.68704 -9.25570 -9.18283 -8.73161 -8.26690 -8.06292 -7.06342 -5.85832 -3.84228 2.04357 2.60320 3.03715 3.42484 3.46224 3.49958 4.38430 4.41262 4.55621 4.78274 4.91277 4.99377 5.01204 5.19157 5.36895 5.48668 5.54816 5.57127 5.58919 5.72465 5.76121 5.81433 5.85425 5.89796 5.96448 6.04576 6.09892 6.13832 6.17127 6.30746 6.37970 6.47851 6.80998 6.88440 7.01261 7.17951 7.63272 7.69700 7.77404 7.87425 7.97152 8.38496 8.45863 8.76475 9.24107 9.77130 11.24784 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012590 B = 0.004663 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.411401 B = 6002.948123 C = 7643.104978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.134 3.866 3 N -0.379 5.379 4 C 0.046 3.954 5 C -0.218 4.218 6 C -0.040 4.040 7 C 0.070 3.930 8 N -0.535 5.535 9 C 0.184 3.816 10 C -0.503 4.503 11 H 0.060 0.940 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.890 3.110 15 H -0.280 1.280 16 H -0.290 1.290 17 H -0.276 1.276 18 C 0.051 3.949 19 C 0.070 3.930 20 O -0.367 6.367 21 C 0.032 3.968 22 C 0.055 3.945 23 N -0.302 5.302 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.168 0.832 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.014 0.986 34 H -0.011 1.011 35 H 0.064 0.936 36 H 0.258 0.742 37 H 0.031 0.969 38 H 0.074 0.926 39 H 0.036 0.964 40 H 0.053 0.947 41 H 0.029 0.971 42 H 0.037 0.963 43 H 0.080 0.920 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.093 -14.425 -5.849 17.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.012 3.988 3 N -0.163 5.163 4 C -0.099 4.099 5 C -0.230 4.230 6 C -0.079 4.079 7 C -0.058 4.058 8 N -0.259 5.259 9 C 0.059 3.941 10 C -0.542 4.542 11 H 0.078 0.922 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.718 3.282 15 H -0.205 1.205 16 H -0.215 1.215 17 H -0.202 1.202 18 C -0.078 4.078 19 C -0.007 4.007 20 O -0.286 6.286 21 C -0.065 4.065 22 C -0.131 4.131 23 N -0.123 5.123 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.185 0.815 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.032 0.968 34 H 0.006 0.994 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.049 0.951 38 H 0.092 0.908 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.047 0.953 42 H 0.055 0.945 43 H 0.098 0.902 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 6.161 -14.756 -6.793 17.373 hybrid contribution -0.224 0.552 0.735 0.946 sum 5.937 -14.203 -6.059 16.544 Atomic orbital electron populations 1.22058 0.93980 1.02536 1.03796 1.21583 0.95984 0.77936 1.03254 1.48574 1.36127 1.09962 1.21640 1.22285 0.96292 0.95041 0.96261 1.20214 1.07553 0.94784 1.00448 1.20016 0.95575 0.95068 0.97218 1.21964 0.95955 0.93322 0.94593 1.62203 1.14573 1.18544 1.30605 1.20058 0.91900 0.91130 0.91011 1.21183 1.16195 1.23509 0.93345 0.92215 1.24934 0.97134 0.97566 0.94844 1.69974 1.35645 1.39248 1.08883 0.86692 0.80174 0.81174 0.80126 1.20545 1.21538 1.20190 1.22119 0.94037 0.94925 0.96731 1.22533 0.95668 0.90126 0.92397 1.88173 1.36427 1.40040 1.63940 1.22647 0.92005 0.92175 0.99626 1.23852 0.95472 0.97225 0.96536 1.77249 1.23854 0.97180 1.14013 0.91119 0.90995 0.91946 0.90233 0.88981 0.81486 0.92365 0.90690 0.89616 0.96759 0.99360 0.91851 0.93195 0.95073 0.90802 0.94554 0.92883 0.95263 0.94476 0.90160 0.80087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 10.10 37.16 0.38 -1.07 16 2 C 0.13 1.18 7.23 -4.04 -0.03 1.15 16 3 N -0.38 -4.94 3.68 -61.36 -0.23 -5.17 16 4 C 0.05 0.60 11.36 -17.23 -0.20 0.41 16 5 C -0.22 -3.23 5.35 -105.05 -0.56 -3.79 16 6 C -0.04 -0.61 5.67 -27.88 -0.16 -0.77 16 7 C 0.07 1.38 4.79 -3.82 -0.02 1.36 16 8 N -0.53 -11.56 4.45 -236.07 -1.05 -12.61 16 9 C 0.18 4.93 4.51 -4.98 -0.02 4.91 16 10 C -0.50 -14.50 8.22 -34.44 -0.28 -14.78 16 11 H 0.06 1.70 7.25 -52.49 -0.38 1.32 16 12 C 0.06 1.63 5.45 -17.82 -0.10 1.54 16 13 N -0.90 -27.55 13.28 55.43 0.74 -26.81 16 14 Si 0.89 22.30 29.54 -169.99 -5.02 17.27 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 C 0.05 0.91 5.39 -3.82 -0.02 0.89 16 19 C 0.07 1.18 6.23 37.16 0.23 1.41 16 20 O -0.37 -7.31 7.79 -35.23 -0.27 -7.58 16 21 C 0.03 0.50 11.01 101.05 1.11 1.61 16 22 C 0.06 0.84 11.96 -17.37 -0.21 0.63 16 23 N -0.30 -4.66 12.42 30.62 0.38 -4.27 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.09 0.58 8.07 -51.93 -0.42 0.16 16 29 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.06 0.80 6.25 -51.93 -0.32 0.47 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.09 1.93 6.58 -51.93 -0.34 1.58 16 33 H 0.01 0.29 8.12 -51.93 -0.42 -0.13 16 34 H -0.01 -0.34 8.11 -51.93 -0.42 -0.76 16 35 H 0.06 1.81 5.14 -51.93 -0.27 1.55 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.03 0.60 8.01 -51.93 -0.42 0.18 16 38 H 0.07 1.09 5.89 -51.93 -0.31 0.79 16 39 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.18 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 359.02 15.07 5.41 5.41 Total: -1.00 -34.10 359.02 -7.43 -41.53 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -7.51 Total: -1.25 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: 0.12 Total: -6.51 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: -0.16 Total: -48.86 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -0.27 Total: -7.58 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.10 -7.43 -41.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616016009.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.386 kcal (2) G-P(sol) polarization free energy of solvation -34.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds