Wall clock time and date at job start Tue Mar 31 2020 05:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50701 * 119.99894 * 2 1 4 4 C 1.30996 * 120.00426 * 179.97438 * 2 1 3 5 5 C 1.50707 * 119.99657 * 354.28511 * 4 2 1 6 6 N 1.46493 * 109.47258 * 233.77003 * 5 4 2 7 7 C 1.34774 * 120.00056 * 179.97438 * 6 5 4 8 8 O 1.21582 * 120.00048 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99801 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99995 * 180.02562 * 9 7 6 11 11 C 1.53073 * 109.44488 * 84.79361 * 10 9 7 12 12 C 1.53196 * 109.29589 * 181.23906 * 11 10 9 13 13 N 1.46924 * 108.89119 * 305.57889 * 12 11 10 14 14 C 1.36935 * 120.62706 * 233.51535 * 13 12 11 15 15 H 1.08002 * 119.99787 * 148.85682 * 14 13 12 16 16 C 1.38810 * 120.00147 * 328.85569 * 14 13 12 17 17 N 1.31619 * 120.00237 * 344.85667 * 16 14 13 18 18 Si 1.86804 * 119.99964 * 164.85886 * 16 14 13 19 19 H 1.48499 * 109.47035 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47139 * 120.00089 * 18 16 14 21 21 H 1.48506 * 109.46954 * 240.00289 * 18 16 14 22 22 C 1.46927 * 118.74060 * 53.53983 * 13 12 11 23 23 C 1.53037 * 109.46137 * 205.00374 * 10 9 7 24 24 H 1.08995 * 109.46983 * 265.25242 * 1 2 3 25 25 H 1.09003 * 109.46995 * 25.25562 * 1 2 3 26 26 H 1.08995 * 109.47033 * 145.24950 * 1 2 3 27 27 H 1.08996 * 109.47532 * 270.00078 * 3 2 1 28 28 H 1.09006 * 109.47192 * 29.99722 * 3 2 1 29 29 H 1.09001 * 109.47129 * 149.99646 * 3 2 1 30 30 H 1.07993 * 120.00242 * 174.28434 * 4 2 1 31 31 H 1.09005 * 109.46607 * 113.76954 * 5 4 2 32 32 H 1.08998 * 109.47238 * 353.77648 * 5 4 2 33 33 H 0.97005 * 119.99720 * 0.02562 * 6 5 4 34 34 H 0.97003 * 120.00579 * 0.02562 * 9 7 6 35 35 H 1.09002 * 109.46003 * 324.97089 * 10 9 7 36 36 H 1.08998 * 109.38777 * 61.35993 * 11 10 9 37 37 H 1.09003 * 109.62363 * 301.25409 * 11 10 9 38 38 H 1.08999 * 109.58330 * 185.71823 * 12 11 10 39 39 H 1.08997 * 109.58478 * 65.43807 * 12 11 10 40 40 H 0.96994 * 120.00334 * 179.97438 * 17 16 14 41 41 H 1.08993 * 109.58865 * 66.17750 * 22 13 12 42 42 H 1.08999 * 109.58824 * 186.46529 * 22 13 12 43 43 H 1.09000 * 109.50211 * 58.66747 * 23 10 9 44 44 H 1.09004 * 109.51850 * 298.58909 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1621 -1.1344 0.0005 5 6 1.4142 -2.4363 0.1311 6 7 1.9731 -3.2113 1.2414 7 6 1.4580 -4.4187 1.5470 8 8 0.5298 -4.8649 0.9008 9 7 1.9719 -5.1315 2.5689 10 6 1.4125 -6.4442 2.9007 11 6 2.0602 -7.5125 2.0163 12 6 1.4506 -8.8791 2.3444 13 7 1.5826 -9.1248 3.7870 14 6 2.1702 -10.2725 4.2483 15 1 2.7130 -10.2636 5.1819 16 6 2.0682 -11.4472 3.5159 17 7 1.1779 -11.5464 2.5516 18 14 3.1945 -12.8875 3.8991 19 1 4.0994 -12.5239 5.0189 20 1 2.3773 -14.0658 4.2849 21 1 4.0024 -13.2173 2.6975 22 6 1.0716 -8.1161 4.7251 23 6 1.6877 -6.7584 4.3730 24 1 -0.3633 -0.0851 1.0241 25 1 -0.3633 0.9295 -0.4385 26 1 -0.3633 -0.8443 -0.5857 27 1 2.4422 1.6198 -1.0276 28 1 1.6713 2.0648 0.5138 29 1 3.2129 1.1748 0.5139 30 1 3.2380 -1.1367 -0.0926 31 1 1.5106 -3.0050 -0.7939 32 1 0.3609 -2.2325 0.3240 33 1 2.7134 -2.8552 1.7572 34 1 2.7123 -4.7754 3.0848 35 1 0.3365 -6.4349 2.7265 36 1 3.1332 -7.5376 2.2062 37 1 1.8814 -7.2769 0.9671 38 1 1.9778 -9.6566 1.7915 39 1 0.3964 -8.8849 2.0677 40 1 1.1069 -12.3672 2.0396 41 1 -0.0136 -8.0572 4.6430 42 1 1.3467 -8.3914 5.7433 43 1 1.2445 -5.9843 4.9993 44 1 2.7639 -6.7921 4.5431 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616232996.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:43 Heat of formation + Delta-G solvation = -5.413002 kcal Electronic energy + Delta-G solvation = -21989.938953 eV Core-core repulsion = 18749.755680 eV Total energy + Delta-G solvation = -3240.183273 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.89935 -37.74593 -36.97232 -34.34514 -34.08114 -32.03437 -30.07257 -29.65756 -28.66547 -28.01842 -25.08544 -23.94969 -22.18145 -21.87276 -20.54805 -19.41841 -18.66259 -17.58478 -16.76626 -16.30833 -15.58544 -15.03686 -14.70579 -14.52370 -14.43182 -14.06278 -13.71461 -13.60923 -13.44818 -12.96939 -12.88977 -12.77096 -12.38950 -12.32100 -12.24416 -11.88336 -11.43315 -11.18001 -11.08296 -10.87589 -10.72650 -10.33349 -10.17482 -10.08539 -9.94579 -9.72262 -9.51327 -9.28745 -8.92669 -8.54181 -8.34641 -6.60161 -5.75331 -3.21668 1.65455 3.03374 3.38988 3.46441 3.47004 3.48635 4.41353 4.48036 4.51745 4.57504 4.93451 5.14177 5.19738 5.23411 5.35867 5.39813 5.44797 5.49386 5.51171 5.61724 5.66856 5.70820 5.74173 5.89947 6.14873 6.28215 6.29763 6.40330 6.43020 6.51579 6.61529 6.65669 6.71200 6.82942 6.97267 7.01674 7.19314 7.43062 7.72386 7.83389 8.23475 8.50477 8.85005 9.24946 9.87328 10.46157 11.33157 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.044784 B = 0.002772 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.067509 B =10099.937479 C =10194.048287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.109 4.109 3 C -0.119 4.119 4 C -0.187 4.187 5 C 0.166 3.834 6 N -0.748 5.748 7 C 0.701 3.299 8 O -0.590 6.590 9 N -0.740 5.740 10 C 0.169 3.831 11 C -0.147 4.147 12 C 0.176 3.824 13 N -0.592 5.592 14 C -0.255 4.255 15 H 0.064 0.936 16 C 0.004 3.996 17 N -0.900 5.900 18 Si 0.902 3.098 19 H -0.277 1.277 20 H -0.290 1.290 21 H -0.289 1.289 22 C 0.149 3.851 23 C -0.138 4.138 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.393 0.607 34 H 0.389 0.611 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.084 0.916 39 H 0.021 0.979 40 H 0.254 0.746 41 H 0.020 0.980 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.037 23.698 -2.691 24.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.110 4.110 3 C -0.176 4.176 4 C -0.205 4.205 5 C 0.042 3.958 6 N -0.405 5.405 7 C 0.400 3.600 8 O -0.468 6.468 9 N -0.394 5.394 10 C 0.065 3.935 11 C -0.187 4.187 12 C 0.049 3.951 13 N -0.315 5.315 14 C -0.385 4.385 15 H 0.082 0.918 16 C -0.195 4.195 17 N -0.544 5.544 18 Si 0.732 3.268 19 H -0.202 1.202 20 H -0.217 1.217 21 H -0.216 1.216 22 C 0.021 3.979 23 C -0.178 4.178 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.132 0.868 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.226 0.774 34 H 0.222 0.778 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.040 0.960 40 H 0.064 0.936 41 H 0.038 0.962 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.105 23.097 -3.396 23.440 hybrid contribution 1.381 -0.397 0.499 1.521 sum 3.486 22.700 -2.897 23.148 Atomic orbital electron populations 1.20967 0.92135 1.02709 1.02610 1.21717 0.96060 0.94980 0.98267 1.20868 0.99728 0.94805 1.02196 1.22686 0.99938 0.93308 1.04616 1.20143 0.97068 0.89003 0.89582 1.45097 1.39551 1.19034 1.36806 1.16014 0.82459 0.80221 0.81263 1.90927 1.31022 1.70979 1.53833 1.45518 1.38621 1.20875 1.34349 1.20898 0.98441 0.79441 0.94733 1.22580 1.00086 0.97782 0.98259 1.20707 0.97603 0.91790 0.84977 1.44075 1.68343 1.18626 1.00469 1.19181 1.25897 0.86172 1.07236 0.91784 1.25156 0.97682 0.97192 0.99454 1.70034 1.33504 1.26678 1.24165 0.86238 0.80352 0.82555 0.77683 1.20246 1.21689 1.21579 1.20846 0.95352 0.87414 0.94255 1.22334 1.01607 0.99651 0.94202 0.91102 0.91726 0.91041 0.91378 0.91573 0.91740 0.86763 0.91284 0.90880 0.77356 0.77780 0.90125 0.92871 0.92810 0.89784 0.96045 0.93629 0.96195 0.92360 0.92697 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.90 8.93 36.01 0.32 -0.58 16 2 C -0.11 -0.80 6.05 -101.07 -0.61 -1.41 16 3 C -0.12 -0.66 10.00 36.01 0.36 -0.30 16 4 C -0.19 -1.51 9.21 -36.02 -0.33 -1.85 16 5 C 0.17 1.79 5.71 -5.19 -0.03 1.76 16 6 N -0.75 -8.66 5.55 -66.42 -0.37 -9.03 16 7 C 0.70 11.16 8.53 -86.92 -0.74 10.42 16 8 O -0.59 -12.11 16.01 5.29 0.08 -12.03 16 9 N -0.74 -10.89 5.08 -58.62 -0.30 -11.19 16 10 C 0.17 3.05 2.41 -67.87 -0.16 2.89 16 11 C -0.15 -3.03 5.66 -26.59 -0.15 -3.18 16 12 C 0.18 4.38 5.27 -3.71 -0.02 4.36 16 13 N -0.59 -15.04 2.98 -172.32 -0.51 -15.56 16 14 C -0.26 -7.05 9.56 -15.06 -0.14 -7.19 16 15 H 0.06 1.73 7.87 -52.49 -0.41 1.31 16 16 C 0.00 0.12 4.94 -17.43 -0.09 0.03 16 17 N -0.90 -26.67 11.31 55.49 0.63 -26.04 16 18 Si 0.90 21.84 29.58 -169.99 -5.03 16.81 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 C 0.15 3.11 6.52 -3.71 -0.02 3.09 16 23 C -0.14 -2.34 5.55 -26.61 -0.15 -2.49 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.37 8.10 -51.93 -0.42 -0.05 16 26 H 0.07 0.55 6.66 -51.93 -0.35 0.20 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.32 8.12 -51.93 -0.42 -0.10 16 29 H 0.06 0.33 8.06 -51.93 -0.42 -0.09 16 30 H 0.11 0.81 8.05 -52.49 -0.42 0.39 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.84 5.76 -51.93 -0.30 0.54 16 33 H 0.39 3.39 8.48 -40.82 -0.35 3.05 16 34 H 0.39 4.47 8.62 -40.82 -0.35 4.12 16 35 H 0.08 1.66 7.58 -51.93 -0.39 1.26 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.08 2.32 6.24 -51.93 -0.32 2.00 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 353.21 15.07 5.32 5.32 Total: -1.00 -32.91 353.21 -9.45 -42.36 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -7.51 Total: 3.81 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -1.77 Total: 5.54 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: -0.55 Total: -61.82 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.08 Total: -12.03 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.91 -9.45 -42.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616232996.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.945 kcal (2) G-P(sol) polarization free energy of solvation -32.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds