Wall clock time and date at job start Tue Mar 31 2020 05:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 113.28012 * 2 1 4 4 C 1.53490 * 114.20904 * 133.07038 * 2 1 3 5 5 N 1.47059 * 87.98750 * 139.65362 * 4 2 1 6 6 C 1.34775 * 136.05952 * 152.84496 * 5 4 2 7 7 O 1.21596 * 120.00047 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00374 * 180.02562 * 6 5 4 9 9 C 1.46501 * 119.99933 * 180.02562 * 8 6 5 10 10 C 1.53043 * 109.45472 * 274.78549 * 9 8 6 11 11 C 1.53193 * 109.30655 * 178.61716 * 10 9 8 12 12 N 1.46931 * 108.77899 * 54.63949 * 11 10 9 13 13 C 1.36931 * 120.63580 * 126.36606 * 12 11 10 14 14 H 1.08004 * 119.99822 * 331.86564 * 13 12 11 15 15 C 1.38809 * 120.00448 * 151.86189 * 13 12 11 16 16 N 1.31622 * 119.99434 * 343.06456 * 15 13 12 17 17 Si 1.86794 * 120.00154 * 163.06484 * 15 13 12 18 18 H 1.48495 * 109.47253 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47227 * 120.00110 * 17 15 13 20 20 H 1.48503 * 109.46989 * 239.99883 * 17 15 13 21 21 C 1.46927 * 118.73323 * 306.39108 * 12 11 10 22 22 C 1.53045 * 109.45885 * 154.72302 * 9 8 6 23 23 C 1.47067 * 87.88768 * 333.10252 * 5 4 2 24 24 H 1.08998 * 109.46853 * 286.93194 * 1 2 3 25 25 H 1.09002 * 109.47467 * 46.93271 * 1 2 3 26 26 H 1.08995 * 109.47238 * 166.93023 * 1 2 3 27 27 H 1.08997 * 109.46972 * 193.06957 * 3 2 1 28 28 H 1.09004 * 109.46879 * 313.06702 * 3 2 1 29 29 H 1.08997 * 109.46827 * 73.06934 * 3 2 1 30 30 H 1.08998 * 113.46897 * 24.86547 * 4 2 1 31 31 H 1.09005 * 113.51827 * 254.44277 * 4 2 1 32 32 H 0.96993 * 119.99822 * 359.71803 * 8 6 5 33 33 H 1.08996 * 109.46481 * 34.74768 * 9 8 6 34 34 H 1.08998 * 109.49747 * 298.56201 * 10 9 8 35 35 H 1.08993 * 109.49611 * 58.66702 * 10 9 8 36 36 H 1.08994 * 109.58846 * 294.84775 * 11 10 9 37 37 H 1.09001 * 109.70391 * 174.49099 * 11 10 9 38 38 H 0.97002 * 119.99510 * 180.02562 * 16 15 13 39 39 H 1.09008 * 109.58274 * 293.81698 * 21 12 11 40 40 H 1.09000 * 109.69947 * 173.46851 * 21 12 11 41 41 H 1.09003 * 109.49311 * 301.33049 * 22 9 8 42 42 H 1.08998 * 109.49926 * 61.42593 * 22 9 8 43 43 H 1.08987 * 113.47320 * 141.67809 * 23 5 4 44 44 H 1.09001 * 113.46456 * 272.12498 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1348 1.4055 0.0000 4 6 2.1594 -0.9560 1.0227 5 7 3.1599 -1.3052 0.0029 6 6 4.4334 -1.7462 0.0039 7 8 5.0083 -1.9419 1.0574 8 7 5.0702 -1.9694 -1.1628 9 6 6.4544 -2.4493 -1.1617 10 6 7.4071 -1.2573 -1.0437 11 6 8.8519 -1.7653 -1.0080 12 7 9.0855 -2.6100 -2.1873 13 6 10.1347 -2.3571 -3.0301 14 1 10.5130 -1.3508 -3.1345 15 6 10.7123 -3.3938 -3.7501 16 7 10.4962 -4.6424 -3.3941 17 14 11.7961 -3.0169 -5.2240 18 1 11.8791 -1.5465 -5.4143 19 1 13.1567 -3.5639 -4.9908 20 1 11.2134 -3.6406 -6.4393 21 6 8.1715 -3.7311 -2.4454 22 6 6.7344 -3.2012 -2.4649 23 6 2.1613 -0.9553 -1.0184 24 1 -0.3633 0.2993 0.9831 25 1 -0.3634 0.7017 -0.7508 26 1 -0.3633 -1.0010 -0.2324 27 1 3.1979 1.3436 -0.2324 28 1 1.6337 2.0166 -0.7508 29 1 2.0034 1.8575 0.9831 30 1 1.5101 -1.7875 1.2965 31 1 2.5823 -0.4484 1.8897 32 1 4.6106 -1.8166 -2.0031 33 1 6.6056 -3.1199 -0.3158 34 1 7.2740 -0.5990 -1.9021 35 1 7.1915 -0.7088 -0.1269 36 1 9.0114 -2.3502 -0.1022 37 1 9.5393 -0.9195 -1.0226 38 1 10.9001 -5.3669 -3.8971 39 1 8.2756 -4.4764 -1.6567 40 1 8.4075 -4.1833 -3.4087 41 1 6.0401 -4.0361 -2.5596 42 1 6.6076 -2.5244 -3.3099 43 1 2.5854 -0.4464 -1.8838 44 1 1.5124 -1.7867 -1.2938 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619032881.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:16 Heat of formation + Delta-G solvation = 23.016503 kcal Electronic energy + Delta-G solvation = -22709.742912 eV Core-core repulsion = 19470.792435 eV Total energy + Delta-G solvation = -3238.950477 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.85523 -38.85536 -37.09524 -34.29564 -32.76959 -31.85280 -30.08547 -29.37049 -27.80875 -26.72066 -26.29613 -24.65488 -22.22552 -21.81721 -20.11190 -19.34578 -18.78260 -17.79835 -16.69081 -16.18453 -16.04250 -14.93465 -14.64238 -14.55395 -14.33391 -13.97399 -13.63535 -13.49190 -13.40416 -12.95243 -12.65351 -12.63598 -12.31456 -12.25678 -11.99410 -11.69231 -11.42857 -11.41337 -11.10157 -10.81574 -10.71708 -10.51999 -10.44909 -10.23022 -10.00718 -9.92213 -9.71441 -9.50600 -8.87882 -8.51414 -8.37985 -6.66146 -5.77827 -3.19838 2.54872 3.37707 3.39254 3.45706 3.48163 3.83516 4.04429 4.50973 4.51725 4.61551 4.81153 5.14772 5.17691 5.27796 5.32443 5.36602 5.39876 5.46611 5.53752 5.56201 5.60520 5.63425 5.64389 5.67507 5.81040 5.94048 6.03132 6.12249 6.32828 6.40291 6.55832 6.63052 6.64826 6.84030 7.01806 7.03072 7.32971 7.36402 7.64523 7.81396 8.19471 8.46481 8.81517 9.22632 9.85934 10.43364 11.31171 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.037887 B = 0.003298 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.856717 B = 8486.771753 C = 8573.559420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.104 4.104 3 C -0.124 4.124 4 C 0.132 3.868 5 N -0.668 5.668 6 C 0.733 3.267 7 O -0.588 6.588 8 N -0.736 5.736 9 C 0.169 3.831 10 C -0.139 4.139 11 C 0.148 3.852 12 N -0.593 5.593 13 C -0.250 4.250 14 H 0.066 0.934 15 C 0.001 3.999 16 N -0.903 5.903 17 Si 0.902 3.098 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.289 1.289 21 C 0.175 3.825 22 C -0.146 4.146 23 C 0.106 3.894 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.390 0.610 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.021 0.979 37 H 0.056 0.944 38 H 0.253 0.747 39 H 0.021 0.979 40 H 0.092 0.908 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.283 8.736 3.791 23.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.105 4.105 3 C -0.181 4.181 4 C 0.008 3.992 5 N -0.409 5.409 6 C 0.436 3.564 7 O -0.466 6.466 8 N -0.389 5.389 9 C 0.065 3.935 10 C -0.179 4.179 11 C 0.021 3.979 12 N -0.316 5.316 13 C -0.380 4.380 14 H 0.084 0.916 15 C -0.198 4.198 16 N -0.548 5.548 17 Si 0.732 3.268 18 H -0.203 1.203 19 H -0.217 1.217 20 H -0.216 1.216 21 C 0.049 3.951 22 C -0.186 4.186 23 C -0.018 4.018 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.223 0.777 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.039 0.961 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.039 0.961 40 H 0.110 0.890 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -20.473 8.342 4.501 22.561 hybrid contribution 0.288 0.063 -1.220 1.255 sum -20.186 8.405 3.281 22.110 Atomic orbital electron populations 1.21645 0.92675 1.02310 1.02463 1.22202 0.95731 0.95409 0.97184 1.21503 1.01023 0.93392 1.02194 1.22897 0.87165 0.95973 0.93132 1.48587 1.09825 1.71457 1.10999 1.15334 0.78941 0.77387 0.84755 1.90924 1.65730 1.59164 1.30803 1.45485 1.15473 1.71640 1.06254 1.20930 0.77405 0.95568 0.99573 1.22390 0.97563 0.97390 1.00592 1.20879 0.92388 0.94422 0.90234 1.44105 1.29750 1.32773 1.24965 1.19236 1.08449 0.92686 1.17634 0.91614 1.25059 0.98493 0.95368 1.00847 1.70042 1.47139 0.98012 1.39588 0.86222 0.79976 0.77756 0.82830 1.20272 1.21731 1.21602 1.20733 0.83490 0.88968 1.01951 1.22543 1.01508 0.99034 0.95468 1.23054 0.88877 0.96506 0.93313 0.91880 0.91927 0.92102 0.92074 0.92002 0.91967 0.90295 0.90600 0.77745 0.90115 0.92494 0.92740 0.96148 0.92584 0.93677 0.96089 0.89033 0.92820 0.92267 0.90781 0.90075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.65 9.30 37.16 0.35 -0.30 16 2 C -0.10 -0.75 1.53 -154.13 -0.24 -0.98 16 3 C -0.12 -0.92 9.22 37.16 0.34 -0.58 16 4 C 0.13 1.28 7.78 -8.52 -0.07 1.22 16 5 N -0.67 -8.36 3.50 -191.15 -0.67 -9.03 16 6 C 0.73 12.34 8.76 -86.92 -0.76 11.58 16 7 O -0.59 -12.48 16.78 5.28 0.09 -12.40 16 8 N -0.74 -11.56 5.08 -58.63 -0.30 -11.85 16 9 C 0.17 3.14 2.42 -67.88 -0.16 2.98 16 10 C -0.14 -2.69 5.65 -26.61 -0.15 -2.84 16 11 C 0.15 3.29 6.52 -3.71 -0.02 3.27 16 12 N -0.59 -15.14 2.99 -172.32 -0.52 -15.65 16 13 C -0.25 -6.93 9.58 -15.06 -0.14 -7.08 16 14 H 0.07 1.79 7.89 -52.48 -0.41 1.38 16 15 C 0.00 0.02 4.92 -17.43 -0.09 -0.07 16 16 N -0.90 -26.32 11.19 55.49 0.62 -25.70 16 17 Si 0.90 21.71 29.59 -169.99 -5.03 16.68 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 21 C 0.18 4.20 5.30 -3.72 -0.02 4.18 16 22 C -0.15 -2.77 5.55 -26.61 -0.15 -2.91 16 23 C 0.11 0.88 7.38 -8.64 -0.06 0.82 16 24 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.06 0.27 8.13 -51.93 -0.42 -0.15 16 26 H 0.06 0.27 7.90 -51.93 -0.41 -0.14 16 27 H 0.06 0.59 7.93 -51.93 -0.41 0.18 16 28 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.67 8.10 -51.93 -0.42 0.24 16 31 H 0.08 0.80 8.12 -51.93 -0.42 0.38 16 32 H 0.39 5.11 8.32 -40.82 -0.34 4.77 16 33 H 0.08 1.70 7.57 -51.93 -0.39 1.31 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 38 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16 40 H 0.09 2.42 6.06 -51.93 -0.31 2.11 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.07 0.57 8.11 -51.94 -0.42 0.15 16 44 H 0.08 0.56 7.94 -51.93 -0.41 0.15 16 LS Contribution 349.94 15.07 5.27 5.27 Total: -1.00 -32.89 349.94 -9.44 -42.33 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -7.73 Total: 1.06 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: -1.18 Total: 9.28 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: -0.86 Total: -62.23 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.09 Total: -12.40 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.89 -9.44 -42.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619032881.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.346 kcal (2) G-P(sol) polarization free energy of solvation -32.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds