Wall clock time and date at job start Tue Mar 31 2020 05:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46833 * 2 1 4 4 H 1.09004 * 115.54970 * 29.32820 * 3 2 1 5 5 C 1.53076 * 117.51317 * 243.61040 * 3 2 1 6 6 C 1.52995 * 117.50001 * 175.00129 * 3 2 1 7 7 H 1.08998 * 117.49903 * 359.97438 * 6 3 2 8 8 N 1.46494 * 117.50191 * 215.00093 * 6 3 2 9 9 C 1.34777 * 120.00297 * 155.08352 * 8 6 3 10 10 O 1.21591 * 120.00091 * 0.02562 * 9 8 6 11 11 N 1.34780 * 120.00060 * 180.02562 * 9 8 6 12 12 C 1.46499 * 119.99985 * 180.02562 * 11 9 8 13 13 C 1.53045 * 109.46217 * 154.99594 * 12 11 9 14 14 C 1.53188 * 109.31391 * 181.38498 * 13 12 11 15 15 N 1.46936 * 108.89281 * 305.29783 * 14 13 12 16 16 C 1.36935 * 120.62903 * 233.68017 * 15 14 13 17 17 H 1.08007 * 119.99920 * 27.39746 * 16 15 14 18 18 C 1.38804 * 120.00238 * 207.39383 * 16 15 14 19 19 N 1.31624 * 120.00025 * 17.25587 * 18 16 15 20 20 Si 1.86801 * 120.00311 * 197.25673 * 18 16 15 21 21 H 1.48497 * 109.47244 * 60.00150 * 20 18 16 22 22 H 1.48504 * 109.46988 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47113 * 300.00082 * 20 18 16 24 24 C 1.47199 * 118.55327 * 53.53951 * 15 14 13 25 25 C 1.53035 * 109.45950 * 275.07079 * 12 11 9 26 26 H 1.09002 * 109.46712 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47046 * 299.99932 * 1 2 3 28 28 H 1.08999 * 109.47524 * 60.00507 * 1 2 3 29 29 H 1.09000 * 109.47046 * 240.00068 * 2 1 3 30 30 H 1.08999 * 109.47524 * 119.99493 * 2 1 3 31 31 H 1.09003 * 117.51662 * 145.04375 * 5 3 2 32 32 H 1.09000 * 117.49285 * 0.02562 * 5 3 2 33 33 H 0.97007 * 120.00397 * 335.08989 * 8 6 3 34 34 H 0.96999 * 119.99873 * 359.97438 * 11 9 8 35 35 H 1.09003 * 109.46221 * 35.02398 * 12 11 9 36 36 H 1.09001 * 109.49105 * 61.43765 * 13 12 11 37 37 H 1.08999 * 109.52410 * 301.35407 * 13 12 11 38 38 H 1.08994 * 109.58954 * 65.15196 * 14 13 12 39 39 H 1.08992 * 109.58924 * 185.43968 * 14 13 12 40 40 H 0.96996 * 120.00327 * 179.97438 * 19 18 16 41 41 H 1.09006 * 109.53081 * 186.67784 * 24 15 14 42 42 H 1.09002 * 109.68302 * 66.36980 * 24 15 14 43 43 H 1.09007 * 109.49366 * 298.56131 * 25 12 11 44 44 H 1.08993 * 109.50367 * 58.62610 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3882 2.1716 0.4817 5 6 2.8445 1.9081 -1.2162 6 6 3.5500 1.6580 0.1182 7 1 4.1802 0.7721 0.1965 8 7 4.0095 2.8283 0.8702 9 6 5.2318 2.8271 1.4381 10 8 5.9533 1.8549 1.3260 11 7 5.6543 3.9036 2.1303 12 6 6.9831 3.9025 2.7472 13 6 7.4713 5.3439 2.9092 14 6 8.8750 5.3375 3.5224 15 7 8.8436 4.5696 4.7748 16 6 9.3033 5.1190 5.9418 17 1 9.2765 6.1897 6.0820 18 6 9.8038 4.3002 6.9446 19 7 10.1551 3.0620 6.6691 20 14 9.9786 4.9552 8.6852 21 1 8.6469 5.3718 9.1934 22 1 10.5327 3.8917 9.5610 23 1 10.8957 6.1232 8.6847 24 6 8.3048 3.2001 4.7469 25 6 6.9074 3.2303 4.1199 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 2.7223 2.9434 -1.5346 32 1 3.0100 1.1866 -2.0162 33 1 3.4341 3.6041 0.9595 34 1 5.0788 4.6793 2.2195 35 1 7.6779 3.3531 2.1119 36 1 6.7904 5.8870 3.5646 37 1 7.5025 5.8297 1.9339 38 1 9.5754 4.8744 2.8274 39 1 9.1882 6.3609 3.7291 40 1 10.5052 2.4898 7.3697 41 1 8.2406 2.8130 5.7639 42 1 8.9580 2.5606 4.1531 43 1 6.2318 3.7935 4.7639 44 1 6.5369 2.2116 4.0063 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619558872.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:57 Heat of formation + Delta-G solvation = 2.826527 kcal Electronic energy + Delta-G solvation = -22089.250349 eV Core-core repulsion = 18849.424368 eV Total energy + Delta-G solvation = -3239.825980 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.05913 -38.29535 -37.13866 -34.32172 -33.74342 -32.17305 -31.28195 -29.93220 -29.21456 -25.04882 -24.14403 -22.79144 -22.18058 -21.51375 -20.93531 -20.42248 -19.41463 -18.04743 -16.86900 -16.50884 -15.30964 -14.94236 -14.83505 -14.73391 -14.56701 -14.04484 -13.70908 -13.45771 -13.02970 -12.94130 -12.84961 -12.58135 -12.38484 -12.29810 -11.55722 -11.46083 -11.36599 -11.24925 -11.08699 -10.88451 -10.69767 -10.35674 -10.26858 -10.22625 -10.06489 -9.95012 -9.72157 -9.53185 -8.88293 -8.54253 -8.34954 -6.66527 -5.75696 -3.18085 2.71691 3.22833 3.40135 3.46098 3.47005 3.75616 4.23777 4.49518 4.51667 4.57201 4.72877 4.88133 5.04676 5.18780 5.32658 5.41053 5.42522 5.49220 5.54405 5.67992 5.68680 5.72859 5.77735 5.84049 5.87440 6.04630 6.12626 6.27076 6.39720 6.48323 6.49562 6.63171 6.68563 6.80291 6.93446 6.98074 7.13806 7.42393 7.71974 7.81630 8.15984 8.47333 8.78226 9.23199 9.86874 10.44037 11.33015 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032340 B = 0.002986 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.600824 B = 9375.305134 C = 9784.632669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.162 4.162 4 H 0.105 0.895 5 C -0.193 4.193 6 C 0.110 3.890 7 H 0.138 0.862 8 N -0.723 5.723 9 C 0.705 3.295 10 O -0.587 6.587 11 N -0.739 5.739 12 C 0.168 3.832 13 C -0.138 4.138 14 C 0.148 3.852 15 N -0.593 5.593 16 C -0.254 4.254 17 H 0.066 0.934 18 C 0.002 3.998 19 N -0.901 5.901 20 Si 0.903 3.097 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.283 1.283 24 C 0.173 3.827 25 C -0.146 4.146 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.394 0.606 34 H 0.390 0.610 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.020 0.980 39 H 0.058 0.942 40 H 0.255 0.745 41 H 0.089 0.911 42 H 0.021 0.979 43 H 0.053 0.947 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.827 -0.590 -13.996 22.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.132 4.132 3 C -0.182 4.182 4 H 0.123 0.877 5 C -0.232 4.232 6 C 0.003 3.997 7 H 0.155 0.845 8 N -0.377 5.377 9 C 0.405 3.595 10 O -0.464 6.464 11 N -0.392 5.392 12 C 0.065 3.935 13 C -0.178 4.178 14 C 0.021 3.979 15 N -0.316 5.316 16 C -0.384 4.384 17 H 0.083 0.917 18 C -0.197 4.197 19 N -0.546 5.546 20 Si 0.733 3.267 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.209 1.209 24 C 0.047 3.953 25 C -0.187 4.187 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.227 0.773 34 H 0.223 0.777 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.107 0.893 42 H 0.039 0.961 43 H 0.072 0.928 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.997 -1.609 -13.941 22.041 hybrid contribution -0.598 1.107 0.949 1.576 sum -17.594 -0.502 -12.991 21.876 Atomic orbital electron populations 1.21741 0.95445 1.01613 1.01800 1.21112 0.95923 0.93740 1.02382 1.22936 0.94218 0.98645 1.02407 0.87731 1.23658 1.04518 1.02603 0.92451 1.21495 0.93298 0.90847 0.94103 0.84472 1.44525 1.16950 1.18644 1.57554 1.15952 0.81344 0.83821 0.78408 1.90927 1.55414 1.34230 1.65827 1.45527 1.19885 1.17150 1.56655 1.20923 0.81165 0.97163 0.94274 1.22343 1.00778 0.94756 0.99958 1.20833 0.91853 0.96343 0.88860 1.44162 1.71034 1.12805 1.03570 1.19127 1.35057 0.92006 0.92168 0.91677 1.25048 0.98515 0.96762 0.99355 1.70027 1.45101 1.07462 1.31968 0.86369 0.77838 0.77834 0.84701 1.21090 1.21642 1.20899 1.20812 0.87869 0.85823 1.00846 1.22572 1.01723 0.99243 0.95155 0.92677 0.92722 0.92705 0.91600 0.91306 0.88758 0.88117 0.77251 0.77746 0.90040 0.91932 0.92664 0.96164 0.92377 0.93530 0.89257 0.96078 0.92829 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.87 37.16 0.37 -0.57 16 2 C -0.09 -0.69 6.22 -26.73 -0.17 -0.86 16 3 C -0.16 -1.29 5.66 -90.58 -0.51 -1.81 16 4 H 0.10 0.77 8.07 -51.93 -0.42 0.35 16 5 C -0.19 -1.55 10.11 -26.69 -0.27 -1.82 16 6 C 0.11 1.16 6.15 -67.94 -0.42 0.74 16 7 H 0.14 1.74 7.40 -51.93 -0.38 1.36 16 8 N -0.72 -8.20 5.57 -58.68 -0.33 -8.52 16 9 C 0.70 11.02 8.53 -86.91 -0.74 10.27 16 10 O -0.59 -11.84 15.57 5.29 0.08 -11.76 16 11 N -0.74 -10.67 5.08 -58.63 -0.30 -10.97 16 12 C 0.17 3.01 2.41 -67.89 -0.16 2.84 16 13 C -0.14 -2.32 5.55 -26.61 -0.15 -2.47 16 14 C 0.15 3.08 6.51 -3.71 -0.02 3.06 16 15 N -0.59 -14.97 3.01 -172.09 -0.52 -15.49 16 16 C -0.25 -6.99 9.59 -15.06 -0.14 -7.13 16 17 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 18 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 19 N -0.90 -26.59 11.18 55.49 0.62 -25.97 16 20 Si 0.90 21.80 29.59 -169.99 -5.03 16.77 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 C 0.17 4.28 5.33 -3.56 -0.02 4.26 16 25 C -0.15 -3.00 5.65 -26.61 -0.15 -3.15 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.46 7.88 -51.93 -0.41 0.05 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.10 0.74 8.03 -51.93 -0.42 0.33 16 33 H 0.39 3.26 8.84 -40.82 -0.36 2.90 16 34 H 0.39 4.36 8.62 -40.82 -0.35 4.01 16 35 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 40 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.09 2.46 6.04 -51.93 -0.31 2.15 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 353.96 15.07 5.33 5.33 Total: -1.00 -32.35 353.96 -10.27 -42.62 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -7.66 Total: 4.64 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -2.48 Total: 3.34 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: -0.52 Total: -60.95 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.08 Total: -11.76 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.35 -10.27 -42.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619558872.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.450 kcal (2) G-P(sol) polarization free energy of solvation -32.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds