Wall clock time and date at job start Tue Mar 31 2020 05:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47164 * 2 1 4 4 C 1.50694 * 109.46903 * 180.02562 * 3 2 1 5 5 N 1.31136 * 126.55347 * 89.71398 * 4 3 2 6 6 C 1.34492 * 105.61367 * 179.91183 * 5 4 3 7 7 C 1.50706 * 126.28269 * 180.12577 * 6 5 4 8 8 N 1.46899 * 109.46969 * 270.23759 * 7 6 5 9 9 C 1.46903 * 110.99588 * 190.00174 * 8 7 6 10 10 C 1.50708 * 109.46969 * 155.65357 * 9 8 7 11 11 H 1.08002 * 119.99588 * 2.97141 * 10 9 8 12 12 C 1.37873 * 120.00099 * 182.97146 * 10 9 8 13 13 N 1.31518 * 120.00016 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00099 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47244 * 89.99514 * 14 12 10 16 16 H 1.48493 * 109.47095 * 209.99535 * 14 12 10 17 17 H 1.48501 * 109.46837 * 329.99589 * 14 12 10 18 18 C 1.46896 * 110.99841 * 66.05108 * 8 7 6 19 19 C 1.53001 * 109.47032 * 197.43689 * 18 8 7 20 20 C 1.53010 * 109.46856 * 60.95668 * 19 18 8 21 21 C 1.52996 * 109.47026 * 180.95349 * 19 18 8 22 22 N 1.29946 * 107.42849 * 0.34663 * 6 5 4 23 23 O 1.21305 * 110.24783 * 359.78454 * 22 6 5 24 24 H 1.08994 * 109.47366 * 60.00387 * 1 2 3 25 25 H 1.09005 * 109.46692 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46925 * 299.99807 * 1 2 3 27 27 H 1.08997 * 109.47236 * 239.99788 * 2 1 3 28 28 H 1.09005 * 109.47613 * 120.00081 * 2 1 3 29 29 H 1.08997 * 109.47216 * 59.99776 * 3 2 1 30 30 H 1.09004 * 109.46588 * 300.00074 * 3 2 1 31 31 H 1.08996 * 109.47327 * 30.24544 * 7 6 5 32 32 H 1.09006 * 109.46594 * 150.23901 * 7 6 5 33 33 H 1.08996 * 109.47199 * 275.65441 * 9 8 7 34 34 H 1.09003 * 109.47272 * 35.65844 * 9 8 7 35 35 H 0.96992 * 120.00092 * 180.02562 * 13 12 10 36 36 H 1.08997 * 109.46855 * 317.43900 * 18 8 7 37 37 H 1.09001 * 109.47090 * 77.44249 * 18 8 7 38 38 H 1.08993 * 109.47497 * 300.95960 * 19 18 8 39 39 H 1.08999 * 109.46886 * 59.99463 * 20 19 18 40 40 H 1.08993 * 109.46819 * 179.97438 * 20 19 18 41 41 H 1.08999 * 109.46965 * 300.00009 * 20 19 18 42 42 H 1.08998 * 109.47314 * 60.00853 * 21 19 18 43 43 H 1.09009 * 109.47025 * 180.02562 * 21 19 18 44 44 H 1.08997 * 109.47419 * 299.99877 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.3275 1.4373 -1.0544 6 6 5.5838 1.4416 -0.5743 7 6 6.8506 1.4411 -1.3907 8 7 7.2618 0.0559 -1.6556 9 6 8.6086 0.0093 -2.2403 10 6 9.2337 -1.3322 -1.9557 11 1 8.6677 -2.0927 -1.4384 12 6 10.5279 -1.5885 -2.3558 13 7 11.2170 -0.6625 -2.9862 14 14 11.3024 -3.2515 -2.0037 15 1 11.0333 -4.1728 -3.1368 16 1 12.7688 -3.0889 -1.8355 17 1 10.7208 -3.8148 -0.7588 18 6 6.2889 -0.6259 -2.5197 19 6 6.4956 -2.1389 -2.4255 20 6 6.2735 -2.5951 -0.9820 21 6 5.4980 -2.8480 -3.3436 22 7 5.5048 1.4415 0.7228 23 8 4.3433 1.4419 1.0726 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 6.6741 1.9548 -2.3356 32 1 7.6382 1.9548 -0.8394 33 1 8.5422 0.1579 -3.3180 34 1 9.2224 0.7964 -1.8021 35 1 12.1273 -0.8429 -3.2680 36 1 5.2783 -0.3763 -2.1964 37 1 6.4305 -0.3034 -3.5512 38 1 7.5116 -2.3867 -2.7326 39 1 5.2575 -2.3472 -0.6749 40 1 6.4203 -3.6730 -0.9150 41 1 6.9842 -2.0899 -0.3279 42 1 5.6562 -2.5231 -4.3719 43 1 5.6449 -3.9260 -3.2762 44 1 4.4820 -2.6003 -3.0364 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739913945.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:47 Heat of formation + Delta-G solvation = 53.540060 kcal Electronic energy + Delta-G solvation = -23010.429962 eV Core-core repulsion = 19772.803086 eV Total energy + Delta-G solvation = -3237.626876 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.34410 -37.76325 -36.09968 -35.28248 -33.66724 -32.61194 -31.82902 -28.15626 -27.79136 -26.59080 -26.45251 -24.27008 -23.34550 -22.23973 -21.27414 -20.49503 -18.98976 -17.85603 -17.25795 -16.38921 -15.60579 -15.23142 -15.14794 -14.57131 -14.21448 -13.92275 -13.72543 -13.51681 -12.95832 -12.63662 -12.59113 -12.25912 -12.15680 -11.93633 -11.77010 -11.72542 -11.54534 -11.40937 -11.20538 -11.05387 -10.95682 -10.82171 -10.71538 -10.48897 -10.21318 -10.12722 -9.97202 -9.69403 -9.37851 -9.07690 -8.38273 -7.34584 -6.01402 -4.00230 1.37301 2.47714 2.95577 3.32533 3.39284 3.43723 3.82137 4.32614 4.44814 4.61782 4.69682 4.80511 4.96502 5.20624 5.25488 5.33145 5.38035 5.42152 5.64107 5.68957 5.72377 5.78591 5.81598 5.91198 5.95737 5.98003 6.09772 6.13174 6.22789 6.27974 6.37758 6.43027 6.53453 6.69019 6.79991 7.12726 7.19448 7.26500 7.40390 7.84463 8.06816 8.16028 8.46695 8.49917 9.06077 9.61793 11.09223 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022368 B = 0.004509 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.499143 B = 6208.599880 C = 6837.465598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.022 4.022 4 C 0.163 3.837 5 N -0.476 5.476 6 C 0.194 3.806 7 C 0.141 3.859 8 N -0.527 5.527 9 C 0.194 3.806 10 C -0.503 4.503 11 H 0.078 0.922 12 C 0.055 3.945 13 N -0.899 5.899 14 Si 0.893 3.107 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.272 1.272 18 C 0.071 3.929 19 C -0.106 4.106 20 C -0.127 4.127 21 C -0.142 4.142 22 N -0.370 5.370 23 O 0.072 5.928 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.055 0.945 32 H 0.096 0.904 33 H -0.003 1.003 34 H 0.030 0.970 35 H 0.260 0.740 36 H 0.058 0.942 37 H 0.024 0.976 38 H 0.112 0.888 39 H 0.028 0.972 40 H 0.036 0.964 41 H 0.073 0.927 42 H 0.047 0.953 43 H 0.048 0.952 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.622 2.807 4.274 20.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.062 4.062 4 C -0.058 4.058 5 N -0.210 5.210 6 C -0.079 4.079 7 C 0.010 3.990 8 N -0.253 5.253 9 C 0.069 3.931 10 C -0.541 4.541 11 H 0.096 0.904 12 C -0.147 4.147 13 N -0.539 5.539 14 Si 0.721 3.279 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.197 1.197 18 C -0.057 4.057 19 C -0.124 4.124 20 C -0.184 4.184 21 C -0.200 4.200 22 N -0.077 5.077 23 O 0.014 5.986 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.124 0.876 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.015 0.985 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.043 0.957 38 H 0.130 0.870 39 H 0.047 0.953 40 H 0.055 0.945 41 H 0.092 0.908 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -18.588 2.607 4.732 19.357 hybrid contribution 0.411 -0.402 -0.624 0.849 sum -18.177 2.205 4.108 18.765 Atomic orbital electron populations 1.21741 0.94512 1.02345 1.02115 1.21548 0.96535 0.94476 1.03642 1.20216 0.80589 0.99832 1.05514 1.28731 0.98441 0.97343 0.81315 1.71886 1.00593 1.19675 1.28865 1.25927 0.94933 0.98969 0.88113 1.20352 0.88543 0.93922 0.96133 1.62129 1.04825 1.09992 1.48355 1.19836 0.82020 0.98516 0.92695 1.21376 0.97533 0.98885 1.36326 0.90426 1.24992 0.97138 0.97007 0.95516 1.69956 1.10730 1.33356 1.39863 0.86571 0.78425 0.84182 0.78767 1.20732 1.21338 1.19705 1.22068 0.94902 0.94687 0.94033 1.21430 1.02108 0.93798 0.95068 1.21631 1.00089 0.99196 0.97528 1.21817 0.98761 0.99889 0.99525 1.74661 0.96499 1.20525 1.16065 1.85291 1.11728 1.65794 1.35820 0.92312 0.92122 0.92364 0.90833 0.91119 0.88351 0.87569 0.92716 0.88553 0.98524 0.95226 0.92996 0.92329 0.95733 0.87012 0.95326 0.94493 0.90843 0.93341 0.93280 0.94045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.16 0.37 -0.47 16 2 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 3 C -0.02 -0.18 5.84 -27.88 -0.16 -0.34 16 4 C 0.16 2.13 7.77 -13.05 -0.10 2.03 16 5 N -0.48 -7.67 10.43 -9.87 -0.10 -7.78 16 6 C 0.19 3.51 6.87 -156.37 -1.07 2.44 16 7 C 0.14 2.70 5.55 -4.97 -0.03 2.67 16 8 N -0.53 -11.45 3.70 -237.51 -0.88 -12.33 16 9 C 0.19 4.92 4.79 -4.97 -0.02 4.90 16 10 C -0.50 -13.63 7.24 -34.44 -0.25 -13.88 16 11 H 0.08 2.07 4.58 -52.49 -0.24 1.83 16 12 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 13 N -0.90 -26.35 13.29 55.43 0.74 -25.61 16 14 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 C 0.07 1.43 4.27 -3.83 -0.02 1.42 16 19 C -0.11 -2.07 2.40 -90.62 -0.22 -2.29 16 20 C -0.13 -2.43 8.40 37.16 0.31 -2.12 16 21 C -0.14 -2.32 9.19 37.16 0.34 -1.97 16 22 N -0.37 -6.70 12.16 30.90 0.38 -6.32 16 23 O 0.07 1.09 11.31 18.10 0.20 1.30 16 24 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.05 1.00 8.12 -51.93 -0.42 0.58 16 32 H 0.10 1.84 7.80 -51.93 -0.41 1.43 16 33 H 0.00 -0.08 7.67 -51.93 -0.40 -0.48 16 34 H 0.03 0.80 7.65 -51.93 -0.40 0.40 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.06 1.13 6.03 -51.93 -0.31 0.82 16 37 H 0.02 0.51 7.74 -51.93 -0.40 0.11 16 38 H 0.11 2.55 5.14 -51.93 -0.27 2.28 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 1.59 6.74 -51.93 -0.35 1.24 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 44 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 352.82 15.07 5.32 5.32 Total: -1.00 -30.47 352.82 -7.88 -38.35 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -7.40 Total: -2.14 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -1.11 Total: -7.30 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: 0.13 Total: -52.05 kcal Atomic # 8 Polarization: 1.09 SS G_CDS: 0.20 Total: 1.30 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.47 -7.88 -38.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739913945.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.888 kcal (2) G-P(sol) polarization free energy of solvation -30.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds