Wall clock time and date at job start Tue Mar 31 2020 05:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47258 * 2 1 4 4 C 1.53004 * 109.47443 * 120.00099 * 2 1 3 5 5 N 1.46896 * 109.47369 * 181.07772 * 4 2 1 6 6 C 1.46903 * 111.00094 * 158.53010 * 5 4 2 7 7 C 1.50694 * 109.47179 * 288.19172 * 6 5 4 8 8 H 1.08002 * 120.00542 * 4.79415 * 7 6 5 9 9 C 1.37881 * 119.99603 * 184.80607 * 7 6 5 10 10 N 1.31503 * 120.00415 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99786 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47271 * 89.99833 * 11 9 7 13 13 H 1.48503 * 109.47384 * 209.99866 * 11 9 7 14 14 H 1.48504 * 109.47468 * 330.00138 * 11 9 7 15 15 C 1.46899 * 111.00258 * 282.49171 * 5 4 2 16 16 C 1.52995 * 109.47395 * 90.17687 * 15 5 4 17 17 H 1.08999 * 109.47291 * 300.67010 * 16 15 5 18 18 O 1.42901 * 109.47599 * 60.67123 * 16 15 5 19 19 C 1.53002 * 109.47329 * 180.67624 * 16 15 5 20 20 N 1.46499 * 109.47226 * 174.99785 * 19 16 15 21 21 C 1.34951 * 126.03443 * 124.99745 * 20 19 16 22 22 C 1.35318 * 107.74373 * 179.97438 * 21 20 19 23 23 C 1.39869 * 107.91866 * 0.02562 * 22 21 20 24 24 N 1.30835 * 108.20665 * 359.73894 * 23 22 21 25 25 H 1.08998 * 109.47020 * 299.99799 * 1 2 3 26 26 H 1.08999 * 109.46872 * 60.00219 * 1 2 3 27 27 H 1.09005 * 109.46623 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.47329 * 239.99807 * 2 1 3 29 29 H 1.09003 * 109.46988 * 304.51196 * 3 2 1 30 30 H 1.08996 * 109.46969 * 64.51852 * 3 2 1 31 31 H 1.09004 * 109.47613 * 184.51975 * 3 2 1 32 32 H 1.09001 * 109.46640 * 61.07773 * 4 2 1 33 33 H 1.08996 * 109.46759 * 301.08504 * 4 2 1 34 34 H 1.08998 * 109.46303 * 48.18669 * 6 5 4 35 35 H 1.08997 * 109.46904 * 168.18278 * 6 5 4 36 36 H 0.97000 * 120.00213 * 180.02562 * 10 9 7 37 37 H 1.09003 * 109.46866 * 330.17005 * 15 5 4 38 38 H 1.09005 * 109.46796 * 210.17699 * 15 5 4 39 39 H 0.96705 * 113.99505 * 60.00190 * 18 16 15 40 40 H 1.09004 * 109.46624 * 295.00037 * 19 16 15 41 41 H 1.08999 * 109.46989 * 54.99658 * 19 16 15 42 42 H 1.07995 * 126.12960 * 0.02562 * 21 20 19 43 43 H 1.08000 * 126.04021 * 179.97438 * 22 21 20 44 44 H 1.08007 * 125.89669 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5088 -0.6987 1.2623 6 6 4.0264 -0.9027 2.6219 7 6 3.7660 0.3300 3.4487 8 1 3.1984 1.1493 3.0328 9 6 4.2527 0.4120 4.7362 10 7 4.9436 -0.5857 5.2428 11 14 3.9306 1.9403 5.7608 12 1 2.6629 1.7720 6.5158 13 1 5.0512 2.1425 6.7140 14 1 3.8214 3.1215 4.8674 15 6 4.0589 -1.6959 0.3344 16 6 4.2485 -1.0599 -1.0441 17 1 3.2886 -0.6974 -1.4121 18 8 5.1633 0.0332 -0.9428 19 6 4.8056 -2.1031 -2.0149 20 7 4.8749 -1.5295 -3.3611 21 6 5.9734 -1.4691 -4.1427 22 6 5.6211 -0.8692 -5.3034 23 6 4.2611 -0.5516 -5.2282 24 7 3.8115 -0.9517 -4.0665 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.6122 1.9791 -0.8468 30 1 1.7443 1.9323 0.9277 31 1 3.1270 1.4436 -0.0810 32 1 1.6926 -1.7544 1.2395 33 1 1.6610 -0.2188 2.1391 34 1 3.5259 -1.7575 3.0767 35 1 5.0991 -1.0909 2.5779 36 1 5.2857 -0.5281 6.1486 37 1 3.3703 -2.5371 0.2550 38 1 5.0208 -2.0477 0.7076 39 1 6.0403 -0.2166 -0.6208 40 1 5.8043 -2.4004 -1.6947 41 1 4.1524 -2.9756 -2.0248 42 1 6.9571 -1.8349 -3.8880 43 1 6.2749 -0.6700 -6.1397 44 1 3.6811 -0.0641 -5.9980 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739914092.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:12 Heat of formation + Delta-G solvation = 28.073015 kcal Electronic energy + Delta-G solvation = -23045.374832 eV Core-core repulsion = 19806.643622 eV Total energy + Delta-G solvation = -3238.731210 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.07562 -38.42212 -36.25713 -33.93088 -33.08757 -32.35552 -30.23512 -29.37602 -27.07843 -26.55330 -25.90811 -24.09654 -21.90404 -21.09916 -20.58453 -20.52777 -19.34586 -17.33141 -16.42443 -16.11836 -15.88828 -15.13001 -14.79418 -14.30501 -14.19705 -13.98617 -13.80261 -13.36299 -13.23828 -13.14886 -12.79233 -12.34659 -12.21530 -12.08244 -11.71663 -11.44192 -11.34408 -10.97569 -10.92832 -10.82289 -10.69725 -10.56448 -10.33062 -10.20472 -9.96246 -9.70779 -9.68243 -9.34359 -9.13066 -8.50870 -8.44078 -7.21620 -6.02996 -4.03038 1.95613 2.52809 2.89197 3.32101 3.38541 3.44003 4.29192 4.43921 4.53664 4.80966 4.85473 5.03955 5.12874 5.27648 5.32599 5.35855 5.46122 5.51420 5.56887 5.64618 5.76363 5.81032 5.95939 6.00200 6.02058 6.12453 6.17404 6.38219 6.43005 6.51150 6.59305 6.67422 6.68009 6.97738 7.02381 7.16547 7.26078 7.28521 7.74594 7.82254 7.98469 8.10312 8.21248 8.53761 9.05133 9.61083 11.07808 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020729 B = 0.004390 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.433438 B = 6376.964289 C = 7003.378592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.132 4.132 4 C 0.066 3.934 5 N -0.518 5.518 6 C 0.196 3.804 7 C -0.499 4.499 8 H 0.064 0.936 9 C 0.055 3.945 10 N -0.902 5.902 11 Si 0.895 3.105 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.272 1.272 15 C 0.023 3.977 16 C 0.096 3.904 17 H 0.121 0.879 18 O -0.534 6.534 19 C 0.095 3.905 20 N -0.356 5.356 21 C 0.054 3.946 22 C -0.281 4.281 23 C 0.038 3.962 24 N -0.289 5.289 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.063 0.937 29 H 0.031 0.969 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.017 0.983 33 H 0.082 0.918 34 H -0.015 1.015 35 H 0.030 0.970 36 H 0.260 0.740 37 H 0.038 0.962 38 H 0.067 0.933 39 H 0.365 0.635 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.169 0.831 43 H 0.143 0.857 44 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.104 -3.850 -16.962 17.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.190 4.190 4 C -0.062 4.062 5 N -0.241 5.241 6 C 0.071 3.929 7 C -0.538 4.538 8 H 0.082 0.918 9 C -0.146 4.146 10 N -0.542 5.542 11 Si 0.723 3.277 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.197 1.197 15 C -0.107 4.107 16 C 0.036 3.964 17 H 0.138 0.862 18 O -0.338 6.338 19 C -0.028 4.028 20 N -0.138 5.138 21 C -0.093 4.093 22 C -0.311 4.311 23 C -0.148 4.148 24 N -0.111 5.111 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.035 0.965 33 H 0.101 0.899 34 H 0.003 0.997 35 H 0.049 0.951 36 H 0.070 0.930 37 H 0.056 0.944 38 H 0.086 0.914 39 H 0.211 0.789 40 H 0.115 0.885 41 H 0.108 0.892 42 H 0.187 0.813 43 H 0.161 0.839 44 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -1.387 -3.247 -16.231 16.610 hybrid contribution 0.928 -0.464 0.633 1.216 sum -0.459 -3.711 -15.597 16.039 Atomic orbital electron populations 1.21828 0.96325 1.00848 1.01329 1.21278 0.94041 0.97807 0.98127 1.21658 1.03234 0.94417 0.99650 1.22194 0.88614 0.97136 0.98284 1.61863 1.05800 1.46263 1.10169 1.19780 0.95014 0.96077 0.82040 1.21159 1.33477 1.02222 0.96952 0.91752 1.24964 0.95322 0.96442 0.97876 1.69944 1.36903 1.31406 1.15937 0.86534 0.77645 0.83483 0.79999 1.20827 1.21335 1.19713 1.22777 1.00432 0.93721 0.93780 1.22635 0.94752 0.86538 0.92524 0.86173 1.86691 1.24812 1.33877 1.88378 1.22652 1.03796 0.97616 0.78709 1.48574 1.06421 1.45409 1.13397 1.22517 0.93102 1.01478 0.92206 1.21434 0.96731 1.12424 1.00468 1.23819 0.95003 1.00383 0.95610 1.77338 1.11099 1.16260 1.06360 0.92761 0.93199 0.93483 0.91912 0.94975 0.93330 0.90279 0.96495 0.89927 0.99678 0.95149 0.93019 0.94430 0.91416 0.78927 0.88507 0.89247 0.81349 0.83938 0.80417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.19 37.16 0.34 -1.74 16 2 C -0.09 -1.55 2.52 -90.62 -0.23 -1.78 16 3 C -0.13 -2.36 8.95 37.16 0.33 -2.03 16 4 C 0.07 1.26 4.24 -3.82 -0.02 1.24 16 5 N -0.52 -10.47 3.44 -236.08 -0.81 -11.28 16 6 C 0.20 4.88 4.67 -4.98 -0.02 4.86 16 7 C -0.50 -13.75 8.40 -34.44 -0.29 -14.04 16 8 H 0.06 1.79 7.56 -52.49 -0.40 1.39 16 9 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 10 N -0.90 -26.40 13.29 55.43 0.74 -25.66 16 11 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 15 C 0.02 0.37 4.72 -3.83 -0.02 0.36 16 16 C 0.10 1.39 3.07 -26.73 -0.08 1.31 16 17 H 0.12 1.99 4.70 -51.93 -0.24 1.75 16 18 O -0.53 -8.62 12.75 -35.23 -0.45 -9.07 16 19 C 0.09 1.07 6.15 -4.04 -0.02 1.05 16 20 N -0.36 -4.57 3.62 -61.36 -0.22 -4.80 16 21 C 0.05 0.58 11.45 -17.22 -0.20 0.39 16 22 C -0.28 -3.04 10.80 -40.01 -0.43 -3.47 16 23 C 0.04 0.46 12.02 -17.37 -0.21 0.25 16 24 N -0.29 -4.23 12.35 30.63 0.38 -3.85 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 1.04 5.08 -51.92 -0.26 0.77 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 1.59 7.31 -51.93 -0.38 1.21 16 32 H 0.02 0.31 7.57 -51.93 -0.39 -0.08 16 33 H 0.08 1.76 6.95 -51.93 -0.36 1.40 16 34 H -0.01 -0.39 8.05 -51.93 -0.42 -0.81 16 35 H 0.03 0.81 7.61 -51.93 -0.40 0.41 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.04 0.57 7.44 -51.93 -0.39 0.18 16 38 H 0.07 1.06 7.41 -51.93 -0.38 0.68 16 39 H 0.36 4.79 9.05 45.56 0.41 5.20 16 40 H 0.10 0.84 8.07 -51.93 -0.42 0.42 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.17 1.24 8.06 -52.49 -0.42 0.81 16 43 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 44 H 0.18 1.60 8.06 -52.48 -0.42 1.17 16 LS Contribution 356.08 15.07 5.37 5.37 Total: -1.00 -32.22 356.08 -7.54 -39.76 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -6.57 Total: 5.05 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -0.94 Total: -12.17 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 0.08 Total: -45.58 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -0.45 Total: -9.07 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.22 -7.54 -39.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739914092.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.831 kcal (2) G-P(sol) polarization free energy of solvation -32.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds