Wall clock time and date at job start Tue Mar 31 2020 05:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47258 * 2 1 4 4 C 1.53004 * 109.47443 * 120.00099 * 2 1 3 5 5 N 1.46896 * 109.47369 * 181.07772 * 4 2 1 6 6 C 1.46903 * 111.00094 * 158.53010 * 5 4 2 7 7 C 1.50694 * 109.47179 * 288.19172 * 6 5 4 8 8 H 1.08002 * 120.00542 * 4.79415 * 7 6 5 9 9 C 1.37881 * 119.99603 * 184.80607 * 7 6 5 10 10 N 1.31503 * 120.00415 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99786 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47271 * 89.99833 * 11 9 7 13 13 H 1.48503 * 109.47384 * 209.99866 * 11 9 7 14 14 H 1.48504 * 109.47468 * 330.00138 * 11 9 7 15 15 C 1.46899 * 111.00258 * 282.49171 * 5 4 2 16 16 C 1.52995 * 109.47395 * 90.17687 * 15 5 4 17 17 H 1.08999 * 109.47291 * 300.67010 * 16 15 5 18 18 O 1.42901 * 109.47599 * 60.67123 * 16 15 5 19 19 C 1.53002 * 109.47329 * 180.67624 * 16 15 5 20 20 N 1.46499 * 109.47226 * 174.99785 * 19 16 15 21 21 C 1.34951 * 126.03443 * 124.99745 * 20 19 16 22 22 C 1.35318 * 107.74373 * 179.97438 * 21 20 19 23 23 C 1.39869 * 107.91866 * 0.02562 * 22 21 20 24 24 N 1.30835 * 108.20665 * 359.73894 * 23 22 21 25 25 H 1.08998 * 109.47020 * 299.99799 * 1 2 3 26 26 H 1.08999 * 109.46872 * 60.00219 * 1 2 3 27 27 H 1.09005 * 109.46623 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.47329 * 239.99807 * 2 1 3 29 29 H 1.09003 * 109.46988 * 304.51196 * 3 2 1 30 30 H 1.08996 * 109.46969 * 64.51852 * 3 2 1 31 31 H 1.09004 * 109.47613 * 184.51975 * 3 2 1 32 32 H 1.09001 * 109.46640 * 61.07773 * 4 2 1 33 33 H 1.08996 * 109.46759 * 301.08504 * 4 2 1 34 34 H 1.08998 * 109.46303 * 48.18669 * 6 5 4 35 35 H 1.08997 * 109.46904 * 168.18278 * 6 5 4 36 36 H 0.97000 * 120.00213 * 180.02562 * 10 9 7 37 37 H 1.09003 * 109.46866 * 330.17005 * 15 5 4 38 38 H 1.09005 * 109.46796 * 210.17699 * 15 5 4 39 39 H 0.96705 * 113.99505 * 60.00190 * 18 16 15 40 40 H 1.09004 * 109.46624 * 295.00037 * 19 16 15 41 41 H 1.08999 * 109.46989 * 54.99658 * 19 16 15 42 42 H 1.07995 * 126.12960 * 0.02562 * 21 20 19 43 43 H 1.08000 * 126.04021 * 179.97438 * 22 21 20 44 44 H 1.08007 * 125.89669 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5088 -0.6987 1.2623 6 6 4.0264 -0.9027 2.6219 7 6 3.7660 0.3300 3.4487 8 1 3.1984 1.1493 3.0328 9 6 4.2527 0.4120 4.7362 10 7 4.9436 -0.5857 5.2428 11 14 3.9306 1.9403 5.7608 12 1 2.6629 1.7720 6.5158 13 1 5.0512 2.1425 6.7140 14 1 3.8214 3.1215 4.8674 15 6 4.0589 -1.6959 0.3344 16 6 4.2485 -1.0599 -1.0441 17 1 3.2886 -0.6974 -1.4121 18 8 5.1633 0.0332 -0.9428 19 6 4.8056 -2.1031 -2.0149 20 7 4.8749 -1.5295 -3.3611 21 6 5.9734 -1.4691 -4.1427 22 6 5.6211 -0.8692 -5.3034 23 6 4.2611 -0.5516 -5.2282 24 7 3.8115 -0.9517 -4.0665 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.6122 1.9791 -0.8468 30 1 1.7443 1.9323 0.9277 31 1 3.1270 1.4436 -0.0810 32 1 1.6926 -1.7544 1.2395 33 1 1.6610 -0.2188 2.1391 34 1 3.5259 -1.7575 3.0767 35 1 5.0991 -1.0909 2.5779 36 1 5.2857 -0.5281 6.1486 37 1 3.3703 -2.5371 0.2550 38 1 5.0208 -2.0477 0.7076 39 1 6.0403 -0.2166 -0.6208 40 1 5.8043 -2.4004 -1.6947 41 1 4.1524 -2.9756 -2.0248 42 1 6.9571 -1.8349 -3.8880 43 1 6.2749 -0.6700 -6.1397 44 1 3.6811 -0.0641 -5.9980 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739914092.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:11 Heat of formation + Delta-G solvation = 5.703639 kcal Electronic energy + Delta-G solvation = -23046.344841 eV Core-core repulsion = 19806.643622 eV Total energy + Delta-G solvation = -3239.701219 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.93856 -39.81132 -37.58903 -35.58311 -34.32690 -34.02801 -31.25335 -30.54641 -28.84530 -27.88616 -27.18663 -25.71841 -23.36102 -22.24539 -21.78718 -21.52852 -20.73148 -18.54194 -18.17855 -17.47623 -16.98744 -16.64543 -16.29465 -15.69286 -15.49711 -15.27162 -14.91128 -14.79316 -14.43257 -14.28367 -14.15094 -13.73741 -13.58087 -13.28521 -13.09182 -12.95239 -12.79216 -12.74851 -12.55687 -12.36790 -12.19431 -12.07083 -11.71738 -11.49684 -11.46080 -11.33771 -11.09621 -10.93939 -10.59382 -10.21597 -9.38946 -8.87302 -8.18405 -6.25990 1.10371 1.39505 1.40528 1.52105 1.68842 2.06088 2.40639 3.08707 3.16206 3.49062 3.72977 3.87508 4.02638 4.10199 4.16607 4.19395 4.25413 4.37326 4.41651 4.48596 4.63134 4.69299 4.74856 4.83705 4.88851 4.93364 4.97949 5.07449 5.13744 5.17484 5.22262 5.23737 5.27658 5.34989 5.59591 5.68755 5.70178 5.84946 6.10410 6.23197 6.41786 6.68425 6.86744 6.89600 6.96522 7.42812 8.91780 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020729 B = 0.004390 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.433438 B = 6376.964289 C = 7003.378592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.084 4.084 3 C -0.124 4.124 4 C 0.069 3.931 5 N -0.524 5.524 6 C 0.212 3.788 7 C -0.512 4.512 8 H 0.056 0.944 9 C 0.005 3.995 10 N -0.933 5.933 11 Si 0.959 3.041 12 H -0.275 1.275 13 H -0.281 1.281 14 H -0.270 1.270 15 C 0.023 3.977 16 C 0.110 3.890 17 H 0.101 0.899 18 O -0.556 6.556 19 C 0.099 3.901 20 N -0.368 5.368 21 C 0.052 3.948 22 C -0.290 4.290 23 C 0.029 3.971 24 N -0.337 5.337 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.033 0.967 31 H 0.052 0.948 32 H 0.025 0.975 33 H 0.053 0.947 34 H -0.041 1.041 35 H 0.011 0.989 36 H 0.263 0.737 37 H 0.051 0.949 38 H 0.071 0.929 39 H 0.376 0.624 40 H 0.128 0.872 41 H 0.099 0.901 42 H 0.203 0.797 43 H 0.166 0.834 44 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.054 -3.842 -18.381 18.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.103 4.103 3 C -0.182 4.182 4 C -0.060 4.060 5 N -0.247 5.247 6 C 0.086 3.914 7 C -0.551 4.551 8 H 0.074 0.926 9 C -0.192 4.192 10 N -0.574 5.574 11 Si 0.784 3.216 12 H -0.200 1.200 13 H -0.207 1.207 14 H -0.194 1.194 15 C -0.107 4.107 16 C 0.049 3.951 17 H 0.118 0.882 18 O -0.362 6.362 19 C -0.023 4.023 20 N -0.150 5.150 21 C -0.094 4.094 22 C -0.319 4.319 23 C -0.156 4.156 24 N -0.159 5.159 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.043 0.957 33 H 0.071 0.929 34 H -0.024 1.024 35 H 0.029 0.971 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.224 0.776 40 H 0.146 0.854 41 H 0.117 0.883 42 H 0.220 0.780 43 H 0.184 0.816 44 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -1.234 -3.244 -17.675 18.012 hybrid contribution 0.907 -0.482 1.002 1.435 sum -0.327 -3.726 -16.672 17.087 Atomic orbital electron populations 1.21790 0.94186 1.01946 1.01966 1.21195 0.95726 0.96523 0.96854 1.21551 1.01567 0.95482 0.99560 1.22173 0.87856 0.97548 0.98377 1.61786 1.06654 1.48128 1.08164 1.19410 0.93540 0.94061 0.84364 1.21427 1.33208 1.02769 0.97664 0.92590 1.25762 0.95092 0.99341 0.99048 1.70049 1.37802 1.33200 1.16397 0.85536 0.77805 0.79833 0.78382 1.20023 1.20678 1.19443 1.22859 1.00611 0.93348 0.93840 1.22363 0.94067 0.86771 0.91867 0.88170 1.86652 1.25780 1.35172 1.88570 1.22606 1.05634 0.96367 0.77656 1.48659 1.06706 1.45909 1.13744 1.23167 0.93832 1.00561 0.91839 1.21821 0.96544 1.12144 1.01373 1.24339 0.96072 0.99754 0.95423 1.77274 1.12779 1.18171 1.07714 0.93139 0.91538 0.92207 0.91260 0.93217 0.94796 0.92866 0.95728 0.92869 1.02359 0.97127 0.92816 0.93121 0.91020 0.77611 0.85432 0.88256 0.78007 0.81640 0.78378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 9.19 71.98 0.66 -3.15 16 2 C -0.08 -2.75 2.52 -10.79 -0.03 -2.78 16 3 C -0.12 -4.43 8.95 71.98 0.64 -3.79 16 4 C 0.07 2.64 4.24 86.31 0.37 3.01 16 5 N -0.52 -21.59 3.44 -900.81 -3.10 -24.69 16 6 C 0.21 10.94 4.67 85.55 0.40 11.34 16 7 C -0.51 -28.91 8.40 25.60 0.22 -28.70 16 8 H 0.06 3.19 7.56 -2.91 -0.02 3.17 16 9 C 0.01 0.30 5.46 84.66 0.46 0.77 16 10 N -0.93 -55.49 13.29 21.45 0.28 -55.20 16 11 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 12 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 14 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 15 C 0.02 0.73 4.72 86.30 0.41 1.14 16 16 C 0.11 3.07 3.07 30.59 0.09 3.17 16 17 H 0.10 3.26 4.70 -2.39 -0.01 3.25 16 18 O -0.56 -17.68 12.75 -148.98 -1.90 -19.58 16 19 C 0.10 2.05 6.15 86.38 0.53 2.58 16 20 N -0.37 -8.76 3.62 -348.06 -1.26 -10.02 16 21 C 0.05 0.99 11.45 83.54 0.96 1.95 16 22 C -0.29 -5.58 10.80 21.99 0.24 -5.34 16 23 C 0.03 0.67 12.02 85.24 1.02 1.69 16 24 N -0.34 -9.50 12.35 -57.02 -0.70 -10.20 16 25 H 0.05 1.39 8.14 -2.39 -0.02 1.38 16 26 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 28 H 0.07 2.22 5.08 -2.38 -0.01 2.21 16 29 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.05 2.17 7.31 -2.38 -0.02 2.15 16 32 H 0.02 0.90 7.57 -2.39 -0.02 0.88 16 33 H 0.05 2.34 6.95 -2.39 -0.02 2.32 16 34 H -0.04 -2.30 8.05 -2.39 -0.02 -2.32 16 35 H 0.01 0.58 7.61 -2.39 -0.02 0.56 16 36 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 37 H 0.05 1.49 7.44 -2.39 -0.02 1.47 16 38 H 0.07 2.22 7.41 -2.38 -0.02 2.20 16 39 H 0.38 9.60 9.05 -74.05 -0.67 8.93 16 40 H 0.13 1.81 8.07 -2.38 -0.02 1.79 16 41 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.20 2.21 8.06 -2.91 -0.02 2.18 16 43 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 44 H 0.20 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -70.80 356.08 1.62 -69.17 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.30 Total: 21.78 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: 5.97 Total: -18.12 kcal Atomic # 7 Polarization: -95.33 SS G_CDS: -4.78 Total: -100.11 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -1.90 Total: -19.58 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -70.80 1.62 -69.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739914092.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.876 kcal (2) G-P(sol) polarization free energy of solvation -70.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds