Wall clock time and date at job start Tue Mar 31 2020 05:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47264 * 2 1 4 4 C 1.53003 * 109.46959 * 119.99322 * 2 1 3 5 5 N 1.46900 * 109.46845 * 170.15922 * 4 2 1 6 6 C 1.46898 * 111.00772 * 314.52485 * 5 4 2 7 7 C 1.50707 * 109.46968 * 299.87770 * 6 5 4 8 8 H 1.07995 * 119.99792 * 4.84804 * 7 6 5 9 9 C 1.37875 * 119.99870 * 184.84929 * 7 6 5 10 10 N 1.31516 * 119.99903 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 120.00122 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47248 * 90.00218 * 11 9 7 13 13 H 1.48501 * 109.46831 * 210.00296 * 11 9 7 14 14 H 1.48495 * 109.46938 * 330.00014 * 11 9 7 15 15 C 1.46898 * 110.99811 * 78.48112 * 5 4 2 16 16 C 1.53003 * 109.47596 * 79.25669 * 15 5 4 17 17 H 1.09004 * 109.46589 * 53.43501 * 16 15 5 18 18 O 1.42897 * 109.46765 * 293.43587 * 16 15 5 19 19 C 1.52994 * 109.47272 * 173.43522 * 16 15 5 20 20 N 1.46502 * 109.47088 * 185.00428 * 19 16 15 21 21 C 1.34945 * 126.03942 * 124.95093 * 20 19 16 22 22 C 1.35317 * 107.74266 * 180.02562 * 21 20 19 23 23 C 1.39864 * 107.92406 * 359.97438 * 22 21 20 24 24 N 1.30841 * 108.20284 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.47374 * 300.00543 * 1 2 3 26 26 H 1.09002 * 109.47204 * 60.00026 * 1 2 3 27 27 H 1.08994 * 109.47096 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47346 * 239.99982 * 2 1 3 29 29 H 1.08998 * 109.47194 * 211.51264 * 3 2 1 30 30 H 1.09006 * 109.46859 * 331.50870 * 3 2 1 31 31 H 1.09000 * 109.47231 * 91.51012 * 3 2 1 32 32 H 1.09004 * 109.46979 * 50.17130 * 4 2 1 33 33 H 1.08994 * 109.47871 * 290.16044 * 4 2 1 34 34 H 1.09001 * 109.47052 * 59.87126 * 6 5 4 35 35 H 1.08998 * 109.47844 * 179.87556 * 6 5 4 36 36 H 0.97000 * 120.00098 * 179.97438 * 10 9 7 37 37 H 1.09000 * 109.46923 * 319.25610 * 15 5 4 38 38 H 1.09002 * 109.47174 * 199.25830 * 15 5 4 39 39 H 0.96698 * 114.00321 * 302.27784 * 18 16 15 40 40 H 1.09002 * 109.47499 * 64.99735 * 19 16 15 41 41 H 1.09007 * 109.47290 * 305.00215 * 19 16 15 42 42 H 1.07999 * 126.12763 * 0.03860 * 21 20 19 43 43 H 1.08000 * 126.03852 * 180.26650 * 22 21 20 44 44 H 1.07998 * 125.90078 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 3.4897 -0.9295 1.1369 6 6 3.8475 -1.4339 -0.1956 7 6 3.1526 -2.7490 -0.4381 8 1 2.4492 -3.1299 0.2875 9 6 3.4148 -3.4658 -1.5864 10 7 2.8087 -4.6137 -1.7978 11 14 4.6308 -2.8065 -2.8418 12 1 5.9930 -3.3016 -2.5189 13 1 4.2435 -3.2718 -4.1978 14 1 4.6225 -1.3220 -2.8067 15 6 4.2245 0.3040 1.4476 16 6 4.2991 0.4849 2.9650 17 1 4.7098 -0.4172 3.4186 18 8 2.9881 0.7232 3.4812 19 6 5.2008 1.6765 3.2929 20 7 5.3685 1.7771 4.7448 21 6 6.5432 1.8021 5.4085 22 6 6.2683 1.9012 6.7297 23 6 4.8781 1.9387 6.8785 24 7 4.3376 1.8642 5.6893 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 2.9871 1.4930 -0.5371 30 1 1.3095 2.0862 -0.4903 31 1 2.1867 1.7761 1.0273 32 1 1.5404 -1.6856 1.3415 33 1 1.8272 -0.1160 2.1306 34 1 3.5363 -0.7137 -0.9523 35 1 4.9265 -1.5773 -0.2524 36 1 2.9929 -5.1178 -2.6058 37 1 3.7080 1.1558 1.0051 38 1 5.2331 0.2387 1.0395 39 1 2.5471 1.4922 3.0950 40 1 4.7449 2.5919 2.9154 41 1 6.1745 1.5354 2.8236 42 1 7.5265 1.7521 4.9647 43 1 6.9942 1.9483 7.5280 44 1 4.3431 2.0159 7.8135 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739914094.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:14 Heat of formation + Delta-G solvation = 46.072418 kcal Electronic energy + Delta-G solvation = -23113.069007 eV Core-core repulsion = 19875.118310 eV Total energy + Delta-G solvation = -3237.950698 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.10672 -39.00011 -36.56251 -33.46178 -33.15319 -32.32257 -30.20205 -29.64092 -27.67783 -27.12286 -25.87000 -23.88508 -21.86817 -21.11802 -20.74883 -20.62868 -18.98545 -17.38603 -16.73211 -16.35885 -15.76364 -15.36300 -14.93855 -14.72556 -14.14172 -13.97579 -13.83182 -13.80161 -13.20022 -12.95872 -12.76178 -12.51652 -12.27024 -12.24130 -12.07155 -11.61060 -11.36435 -11.18060 -11.02236 -10.78519 -10.70982 -10.54067 -10.50098 -10.16990 -10.04057 -9.85318 -9.53393 -9.31978 -9.06955 -8.58383 -8.56054 -7.19901 -6.05859 -4.02831 1.92247 2.49402 2.87029 3.24744 3.32602 3.32914 4.17861 4.39390 4.51361 4.75808 4.78203 4.98653 5.10575 5.13038 5.27313 5.33941 5.37332 5.48694 5.52502 5.56071 5.57665 5.74101 5.85584 5.89672 5.97556 6.11344 6.19050 6.21120 6.26425 6.31915 6.56915 6.62536 6.65004 6.66942 6.95266 6.98152 7.05011 7.17546 7.58370 7.74766 7.82754 7.93917 8.09580 8.65660 9.04142 9.55676 11.07287 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020629 B = 0.004403 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.002082 B = 6357.289467 C = 7036.949557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.142 4.142 3 C -0.145 4.145 4 C 0.066 3.934 5 N -0.516 5.516 6 C 0.158 3.842 7 C -0.505 4.505 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.899 5.899 11 Si 0.872 3.128 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.269 1.269 15 C -0.005 4.005 16 C 0.108 3.892 17 H 0.107 0.893 18 O -0.529 6.529 19 C 0.098 3.902 20 N -0.364 5.364 21 C 0.045 3.955 22 C -0.279 4.279 23 C 0.029 3.971 24 N -0.265 5.265 25 H 0.045 0.955 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.096 0.904 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.078 0.922 34 H -0.005 1.005 35 H 0.018 0.982 36 H 0.263 0.737 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.363 0.637 40 H 0.084 0.916 41 H 0.102 0.898 42 H 0.170 0.830 43 H 0.143 0.857 44 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.003 16.313 9.999 19.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.161 4.161 3 C -0.202 4.202 4 C -0.062 4.062 5 N -0.238 5.238 6 C 0.032 3.968 7 C -0.543 4.543 8 H 0.099 0.901 9 C -0.132 4.132 10 N -0.539 5.539 11 Si 0.700 3.300 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.194 1.194 15 C -0.135 4.135 16 C 0.047 3.953 17 H 0.125 0.875 18 O -0.333 6.333 19 C -0.024 4.024 20 N -0.146 5.146 21 C -0.101 4.101 22 C -0.308 4.308 23 C -0.157 4.157 24 N -0.086 5.086 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.114 0.886 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.012 0.988 35 H 0.036 0.964 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.209 0.791 40 H 0.102 0.898 41 H 0.121 0.879 42 H 0.187 0.813 43 H 0.161 0.839 44 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 4.176 15.221 9.736 18.545 hybrid contribution 1.375 1.242 -1.349 2.292 sum 5.551 16.463 8.386 19.292 Atomic orbital electron populations 1.21729 0.95810 1.01704 1.00159 1.21910 0.95727 0.95327 1.03186 1.22137 1.00334 0.97463 1.00268 1.22366 0.87866 1.00519 0.95447 1.62075 1.05733 1.24724 1.31298 1.20288 0.95830 0.95891 0.84784 1.21017 1.25106 1.02587 1.05581 0.90139 1.24889 0.95897 0.94691 0.97764 1.69891 1.43125 1.13795 1.27052 0.86913 0.82177 0.79587 0.81352 1.20256 1.21289 1.19431 1.23176 1.00150 0.95562 0.94570 1.22232 0.83082 0.95728 0.94246 0.87550 1.86752 1.28183 1.51021 1.67384 1.22582 1.03169 1.01362 0.75298 1.48662 1.03750 1.55695 1.06524 1.22568 0.91648 1.02525 0.93364 1.21462 0.96246 1.17319 0.95797 1.23920 0.93894 1.01117 0.96770 1.77572 1.11812 1.21884 0.97348 0.93624 0.93767 0.92428 0.88588 0.93172 0.93424 0.93202 0.90749 0.90352 0.98790 0.96356 0.92719 0.92102 0.91241 0.79054 0.89771 0.87937 0.81321 0.83934 0.80428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.00 37.16 0.33 -1.78 16 2 C -0.14 -2.44 2.37 -90.62 -0.22 -2.66 16 3 C -0.15 -2.02 7.77 37.16 0.29 -1.73 16 4 C 0.07 1.22 4.41 -3.82 -0.02 1.21 16 5 N -0.52 -10.11 4.66 -236.07 -1.10 -11.21 16 6 C 0.16 3.63 3.19 -4.97 -0.02 3.62 16 7 C -0.50 -13.90 8.72 -34.44 -0.30 -14.20 16 8 H 0.08 2.45 6.86 -52.49 -0.36 2.09 16 9 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 10 N -0.90 -27.27 13.96 55.43 0.77 -26.49 16 11 Si 0.87 21.08 27.38 -169.99 -4.65 16.42 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.27 -6.21 6.68 56.52 0.38 -5.83 16 15 C 0.00 -0.07 4.52 -3.82 -0.02 -0.09 16 16 C 0.11 1.45 3.41 -26.73 -0.09 1.36 16 17 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 18 O -0.53 -7.67 9.86 -35.23 -0.35 -8.02 16 19 C 0.10 1.02 6.19 -4.04 -0.03 1.00 16 20 N -0.36 -4.46 3.68 -61.36 -0.23 -4.68 16 21 C 0.05 0.47 11.45 -17.22 -0.20 0.27 16 22 C -0.28 -2.92 10.80 -40.01 -0.43 -3.35 16 23 C 0.03 0.35 12.03 -17.37 -0.21 0.14 16 24 N -0.27 -3.75 11.56 30.62 0.35 -3.39 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.04 0.63 8.11 -51.93 -0.42 0.21 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.10 2.02 5.32 -51.93 -0.28 1.74 16 29 H 0.05 0.72 6.97 -51.93 -0.36 0.36 16 30 H 0.05 0.60 7.80 -51.93 -0.40 0.20 16 31 H 0.05 0.60 5.37 -51.93 -0.28 0.32 16 32 H 0.07 1.62 6.92 -51.93 -0.36 1.26 16 33 H 0.08 1.31 4.68 -51.93 -0.24 1.07 16 34 H -0.01 -0.12 5.07 -51.93 -0.26 -0.38 16 35 H 0.02 0.43 7.12 -51.93 -0.37 0.06 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.06 0.81 3.22 -51.93 -0.17 0.64 16 38 H 0.07 0.98 7.76 -51.93 -0.40 0.58 16 39 H 0.36 4.25 7.63 45.56 0.35 4.60 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.10 0.82 8.07 -51.93 -0.42 0.40 16 42 H 0.17 1.18 8.06 -52.49 -0.42 0.75 16 43 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 44 H 0.18 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 337.26 15.07 5.08 5.08 Total: -1.00 -32.70 337.26 -7.21 -39.91 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -6.10 Total: 6.74 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -0.99 Total: -14.35 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: -0.20 Total: -45.77 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -0.35 Total: -8.02 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.65 Total: 16.42 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.70 -7.21 -39.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739914094.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.978 kcal (2) G-P(sol) polarization free energy of solvation -32.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds