Wall clock time and date at job start Tue Mar 31 2020 05:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47264 * 2 1 4 4 C 1.53003 * 109.46959 * 119.99322 * 2 1 3 5 5 N 1.46900 * 109.46845 * 170.15922 * 4 2 1 6 6 C 1.46898 * 111.00772 * 314.52485 * 5 4 2 7 7 C 1.50707 * 109.46968 * 299.87770 * 6 5 4 8 8 H 1.07995 * 119.99792 * 4.84804 * 7 6 5 9 9 C 1.37875 * 119.99870 * 184.84929 * 7 6 5 10 10 N 1.31516 * 119.99903 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 120.00122 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47248 * 90.00218 * 11 9 7 13 13 H 1.48501 * 109.46831 * 210.00296 * 11 9 7 14 14 H 1.48495 * 109.46938 * 330.00014 * 11 9 7 15 15 C 1.46898 * 110.99811 * 78.48112 * 5 4 2 16 16 C 1.53003 * 109.47596 * 79.25669 * 15 5 4 17 17 H 1.09004 * 109.46589 * 53.43501 * 16 15 5 18 18 O 1.42897 * 109.46765 * 293.43587 * 16 15 5 19 19 C 1.52994 * 109.47272 * 173.43522 * 16 15 5 20 20 N 1.46502 * 109.47088 * 185.00428 * 19 16 15 21 21 C 1.34945 * 126.03942 * 124.95093 * 20 19 16 22 22 C 1.35317 * 107.74266 * 180.02562 * 21 20 19 23 23 C 1.39864 * 107.92406 * 359.97438 * 22 21 20 24 24 N 1.30841 * 108.20284 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.47374 * 300.00543 * 1 2 3 26 26 H 1.09002 * 109.47204 * 60.00026 * 1 2 3 27 27 H 1.08994 * 109.47096 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47346 * 239.99982 * 2 1 3 29 29 H 1.08998 * 109.47194 * 211.51264 * 3 2 1 30 30 H 1.09006 * 109.46859 * 331.50870 * 3 2 1 31 31 H 1.09000 * 109.47231 * 91.51012 * 3 2 1 32 32 H 1.09004 * 109.46979 * 50.17130 * 4 2 1 33 33 H 1.08994 * 109.47871 * 290.16044 * 4 2 1 34 34 H 1.09001 * 109.47052 * 59.87126 * 6 5 4 35 35 H 1.08998 * 109.47844 * 179.87556 * 6 5 4 36 36 H 0.97000 * 120.00098 * 179.97438 * 10 9 7 37 37 H 1.09000 * 109.46923 * 319.25610 * 15 5 4 38 38 H 1.09002 * 109.47174 * 199.25830 * 15 5 4 39 39 H 0.96698 * 114.00321 * 302.27784 * 18 16 15 40 40 H 1.09002 * 109.47499 * 64.99735 * 19 16 15 41 41 H 1.09007 * 109.47290 * 305.00215 * 19 16 15 42 42 H 1.07999 * 126.12763 * 0.03860 * 21 20 19 43 43 H 1.08000 * 126.03852 * 180.26650 * 22 21 20 44 44 H 1.07998 * 125.90078 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 3.4897 -0.9295 1.1369 6 6 3.8475 -1.4339 -0.1956 7 6 3.1526 -2.7490 -0.4381 8 1 2.4492 -3.1299 0.2875 9 6 3.4148 -3.4658 -1.5864 10 7 2.8087 -4.6137 -1.7978 11 14 4.6308 -2.8065 -2.8418 12 1 5.9930 -3.3016 -2.5189 13 1 4.2435 -3.2718 -4.1978 14 1 4.6225 -1.3220 -2.8067 15 6 4.2245 0.3040 1.4476 16 6 4.2991 0.4849 2.9650 17 1 4.7098 -0.4172 3.4186 18 8 2.9881 0.7232 3.4812 19 6 5.2008 1.6765 3.2929 20 7 5.3685 1.7771 4.7448 21 6 6.5432 1.8021 5.4085 22 6 6.2683 1.9012 6.7297 23 6 4.8781 1.9387 6.8785 24 7 4.3376 1.8642 5.6893 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 2.9871 1.4930 -0.5371 30 1 1.3095 2.0862 -0.4903 31 1 2.1867 1.7761 1.0273 32 1 1.5404 -1.6856 1.3415 33 1 1.8272 -0.1160 2.1306 34 1 3.5363 -0.7137 -0.9523 35 1 4.9265 -1.5773 -0.2524 36 1 2.9929 -5.1178 -2.6058 37 1 3.7080 1.1558 1.0051 38 1 5.2331 0.2387 1.0395 39 1 2.5471 1.4922 3.0950 40 1 4.7449 2.5919 2.9154 41 1 6.1745 1.5354 2.8236 42 1 7.5265 1.7521 4.9647 43 1 6.9942 1.9483 7.5280 44 1 4.3431 2.0159 7.8135 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739914094.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:13 Heat of formation + Delta-G solvation = 21.215642 kcal Electronic energy + Delta-G solvation = -23114.146878 eV Core-core repulsion = 19875.118310 eV Total energy + Delta-G solvation = -3239.028568 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.92415 -40.33852 -37.77729 -35.06990 -34.29144 -33.99353 -31.26390 -30.72864 -29.32529 -28.30930 -27.07217 -25.41615 -23.27529 -22.23511 -21.76311 -21.51180 -20.51423 -18.89946 -18.17665 -17.43585 -16.90674 -16.72435 -16.31338 -15.98410 -15.85070 -15.02815 -14.95075 -14.78658 -14.54883 -14.42628 -13.98092 -13.71872 -13.55285 -13.38776 -13.13112 -12.96727 -12.75432 -12.65403 -12.53070 -12.39457 -12.03271 -11.90175 -11.80272 -11.62441 -11.43992 -11.33430 -11.22122 -10.76077 -10.65904 -10.16377 -9.39088 -8.70967 -8.25299 -6.27741 1.11635 1.33636 1.35249 1.45475 1.72524 2.06537 2.34990 3.06837 3.15442 3.47460 3.81563 3.96043 4.06073 4.09297 4.16264 4.18644 4.27451 4.29582 4.40434 4.51192 4.64923 4.71526 4.75540 4.81694 4.82208 4.91634 4.98404 5.01580 5.05185 5.11803 5.15550 5.23357 5.30074 5.34254 5.51569 5.57837 5.69296 5.85566 6.06841 6.24569 6.47162 6.76303 6.80213 6.90135 6.92521 7.35352 8.91745 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020629 B = 0.004403 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.002082 B = 6357.289467 C = 7036.949557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.140 4.140 3 C -0.138 4.138 4 C 0.074 3.926 5 N -0.539 5.539 6 C 0.171 3.829 7 C -0.506 4.506 8 H 0.029 0.971 9 C 0.005 3.995 10 N -0.953 5.953 11 Si 0.946 3.054 12 H -0.267 1.267 13 H -0.286 1.286 14 H -0.245 1.245 15 C -0.002 4.002 16 C 0.119 3.881 17 H 0.073 0.927 18 O -0.549 6.549 19 C 0.103 3.897 20 N -0.375 5.375 21 C 0.044 3.956 22 C -0.289 4.289 23 C 0.018 3.982 24 N -0.312 5.312 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.029 0.971 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.023 0.977 33 H 0.100 0.900 34 H 0.002 0.998 35 H 0.022 0.978 36 H 0.264 0.736 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.376 0.624 40 H 0.103 0.897 41 H 0.132 0.868 42 H 0.204 0.796 43 H 0.164 0.836 44 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.142 19.820 9.847 23.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.160 4.160 3 C -0.195 4.195 4 C -0.053 4.053 5 N -0.261 5.261 6 C 0.044 3.956 7 C -0.544 4.544 8 H 0.048 0.952 9 C -0.192 4.192 10 N -0.594 5.594 11 Si 0.770 3.230 12 H -0.192 1.192 13 H -0.212 1.212 14 H -0.168 1.168 15 C -0.131 4.131 16 C 0.058 3.942 17 H 0.091 0.909 18 O -0.356 6.356 19 C -0.019 4.019 20 N -0.158 5.158 21 C -0.102 4.102 22 C -0.318 4.318 23 C -0.168 4.168 24 N -0.133 5.133 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.042 0.958 33 H 0.118 0.882 34 H 0.020 0.980 35 H 0.040 0.960 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.224 0.776 40 H 0.121 0.879 41 H 0.150 0.850 42 H 0.221 0.779 43 H 0.182 0.818 44 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 6.315 18.761 9.608 22.004 hybrid contribution 0.634 0.094 -1.158 1.324 sum 6.949 18.856 8.450 21.800 Atomic orbital electron populations 1.21701 0.94800 1.00534 1.02055 1.21793 0.96711 0.97280 1.00175 1.22056 1.00670 0.94678 1.02100 1.22241 0.87340 0.98446 0.97304 1.61900 1.06622 1.28299 1.29301 1.20013 0.95028 0.93623 0.86938 1.21250 1.24160 1.04635 1.04404 0.95226 1.25858 0.98181 0.94844 1.00275 1.70073 1.45492 1.15772 1.28082 0.85732 0.79296 0.80188 0.77828 1.19216 1.21243 1.16849 1.23273 1.00260 0.93813 0.95722 1.21978 0.83360 0.96144 0.92701 0.90881 1.86719 1.29013 1.51997 1.67826 1.22599 1.04056 1.00282 0.74934 1.48802 1.03987 1.56063 1.06900 1.23211 0.92456 1.01059 0.93476 1.21833 0.96095 1.17138 0.96760 1.24397 0.94992 1.00371 0.97015 1.77495 1.13498 1.23841 0.98491 0.91284 0.92204 0.95220 0.92769 0.93131 0.91544 0.90816 0.95845 0.88175 0.98018 0.96016 0.92694 0.89795 0.89981 0.77569 0.87866 0.84981 0.77924 0.81809 0.78706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.09 9.00 71.98 0.65 -3.44 16 2 C -0.14 -4.75 2.37 -10.79 -0.03 -4.77 16 3 C -0.14 -3.37 7.77 71.98 0.56 -2.81 16 4 C 0.07 2.83 4.41 86.30 0.38 3.21 16 5 N -0.54 -21.09 4.66 -900.78 -4.20 -25.29 16 6 C 0.17 7.83 3.19 85.56 0.27 8.10 16 7 C -0.51 -29.17 8.72 25.60 0.22 -28.95 16 8 H 0.03 1.95 6.86 -2.91 -0.02 1.93 16 9 C 0.00 0.28 5.47 84.65 0.46 0.75 16 10 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16 11 Si 0.95 43.58 27.38 68.60 1.88 45.46 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 13 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 14 H -0.25 -10.24 6.68 99.48 0.66 -9.57 16 15 C 0.00 -0.06 4.52 86.30 0.39 0.33 16 16 C 0.12 2.97 3.41 30.59 0.10 3.08 16 17 H 0.07 2.33 8.14 -2.38 -0.02 2.32 16 18 O -0.55 -15.13 9.86 -148.98 -1.47 -16.60 16 19 C 0.10 1.79 6.19 86.38 0.53 2.32 16 20 N -0.37 -8.25 3.68 -348.06 -1.28 -9.53 16 21 C 0.04 0.78 11.45 83.54 0.96 1.74 16 22 C -0.29 -5.39 10.80 21.99 0.24 -5.15 16 23 C 0.02 0.40 12.03 85.23 1.02 1.43 16 24 N -0.31 -8.40 11.56 -57.03 -0.66 -9.06 16 25 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.06 1.63 8.11 -2.39 -0.02 1.62 16 27 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.05 2.31 5.32 -2.39 -0.01 2.29 16 29 H 0.05 1.25 6.97 -2.39 -0.02 1.23 16 30 H 0.07 1.41 7.80 -2.38 -0.02 1.39 16 31 H 0.07 1.45 5.37 -2.39 -0.01 1.44 16 32 H 0.02 1.10 6.92 -2.38 -0.02 1.08 16 33 H 0.10 3.32 4.68 -2.39 -0.01 3.30 16 34 H 0.00 0.11 5.07 -2.39 -0.01 0.09 16 35 H 0.02 0.99 7.12 -2.39 -0.02 0.97 16 36 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 37 H 0.08 1.90 3.22 -2.39 -0.01 1.90 16 38 H 0.08 2.04 7.76 -2.39 -0.02 2.02 16 39 H 0.38 7.79 7.63 -74.06 -0.57 7.23 16 40 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.13 1.50 8.07 -2.38 -0.02 1.48 16 42 H 0.20 1.97 8.06 -2.91 -0.02 1.95 16 43 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 44 H 0.20 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -76.44 337.26 0.73 -75.71 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.39 Total: 23.59 kcal Atomic # 6 Polarization: -29.95 SS G_CDS: 5.77 Total: -24.18 kcal Atomic # 7 Polarization: -98.14 SS G_CDS: -5.84 Total: -103.97 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -1.47 Total: -16.60 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.88 Total: 45.46 kcal Total: -76.44 0.73 -75.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739914094.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.921 kcal (2) G-P(sol) polarization free energy of solvation -76.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds