Wall clock time and date at job start Tue Mar 31 2020 05:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46922 * 2 1 4 4 C 1.53001 * 109.47311 * 119.99757 * 2 1 3 5 5 N 1.46893 * 109.47265 * 179.37378 * 4 2 1 6 6 C 1.46899 * 111.00562 * 285.72841 * 5 4 2 7 7 C 1.50696 * 109.46989 * 75.44677 * 6 5 4 8 8 H 1.07998 * 120.00097 * 5.48344 * 7 6 5 9 9 C 1.37879 * 120.00032 * 185.47725 * 7 6 5 10 10 N 1.31522 * 119.99756 * 0.02562 * 9 7 6 11 11 Si 1.86791 * 120.00177 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47168 * 90.00313 * 11 9 7 13 13 H 1.48504 * 109.47349 * 209.99976 * 11 9 7 14 14 H 1.48504 * 109.47333 * 330.00281 * 11 9 7 15 15 C 1.46901 * 110.99858 * 161.77076 * 5 4 2 16 16 C 1.50701 * 109.47504 * 297.00863 * 15 5 4 17 17 N 1.31132 * 126.55133 * 85.74300 * 16 15 5 18 18 C 1.34498 * 105.61202 * 179.97438 * 17 16 15 19 19 C 1.50700 * 126.28705 * 179.97438 * 18 17 16 20 20 C 1.53000 * 109.47338 * 120.04477 * 19 18 17 21 21 C 1.53000 * 109.47112 * 240.04895 * 19 18 17 22 22 N 1.29949 * 107.42760 * 359.97438 * 18 17 16 23 23 O 1.21300 * 110.24691 * 0.02562 * 22 18 17 24 24 H 1.08999 * 109.47582 * 300.00227 * 1 2 3 25 25 H 1.09006 * 109.46854 * 60.00193 * 1 2 3 26 26 H 1.09002 * 109.46715 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47316 * 240.00247 * 2 1 3 28 28 H 1.08996 * 109.46707 * 184.77030 * 3 2 1 29 29 H 1.09001 * 109.46695 * 304.76845 * 3 2 1 30 30 H 1.08994 * 109.46659 * 64.77152 * 3 2 1 31 31 H 1.09006 * 109.46908 * 59.37402 * 4 2 1 32 32 H 1.09005 * 109.46997 * 299.37947 * 4 2 1 33 33 H 1.08994 * 109.47523 * 195.45442 * 6 5 4 34 34 H 1.09008 * 109.46491 * 315.45056 * 6 5 4 35 35 H 0.96996 * 119.99584 * 179.97438 * 10 9 7 36 36 H 1.09004 * 109.47497 * 177.00476 * 15 5 4 37 37 H 1.09001 * 109.46837 * 57.00770 * 15 5 4 38 38 H 1.09008 * 109.46711 * 0.04407 * 19 18 17 39 39 H 1.08997 * 109.47433 * 180.02562 * 20 19 18 40 40 H 1.09006 * 109.47111 * 300.00124 * 20 19 18 41 41 H 1.08998 * 109.46939 * 59.99828 * 20 19 18 42 42 H 1.08993 * 109.47110 * 59.99575 * 21 19 18 43 43 H 1.08997 * 109.46903 * 179.97438 * 21 19 18 44 44 H 1.08998 * 109.46948 * 299.99400 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5089 -0.7343 1.2417 6 6 4.0218 -1.6999 0.2606 7 6 3.8665 -1.1356 -1.1280 8 1 3.5132 -0.1240 -1.2635 9 6 4.1755 -1.9106 -2.2257 10 7 4.6053 -3.1426 -2.0608 11 14 3.9836 -1.2110 -3.9470 12 1 5.2523 -0.5595 -4.3608 13 1 3.6587 -2.3079 -4.8939 14 1 2.8873 -0.2092 -3.9548 15 6 4.0397 -1.0138 2.5826 16 6 3.6321 0.0897 3.5245 17 7 2.5061 0.1708 4.1916 18 6 2.5839 1.3143 4.8954 19 6 1.5326 1.8623 5.8258 20 6 2.1169 1.9958 7.2335 21 6 1.0787 3.2365 5.3295 22 7 3.7322 1.8598 4.6259 23 8 4.3495 1.1722 3.8401 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1266 1.4437 -0.0855 29 1 1.6085 1.9804 -0.8442 30 1 1.7481 1.9310 0.9296 31 1 1.6675 -1.7456 1.2549 32 1 1.6858 -0.2009 2.1392 33 1 5.0760 -1.8936 0.4583 34 1 3.4603 -2.6309 0.3394 35 1 4.8223 -3.6880 -2.8330 36 1 5.1274 -1.0705 2.5384 37 1 3.6408 -1.9630 2.9407 38 1 0.6793 1.1844 5.8493 39 1 1.3564 2.3918 7.9066 40 1 2.4403 1.0167 7.5871 41 1 2.9702 2.6736 7.2099 42 1 0.6625 3.1413 4.3267 43 1 0.3180 3.6326 6.0022 44 1 1.9319 3.9144 5.3060 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739914358.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:05 Heat of formation + Delta-G solvation = 57.257237 kcal Electronic energy + Delta-G solvation = -23187.330688 eV Core-core repulsion = 19949.865000 eV Total energy + Delta-G solvation = -3237.465687 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.31612 -37.79659 -36.79331 -34.67512 -33.72526 -32.72236 -31.41652 -27.98314 -27.41080 -26.63931 -26.44963 -24.51437 -24.20336 -22.73640 -21.06988 -19.94078 -19.02100 -17.80902 -17.33597 -16.47388 -15.29469 -15.07568 -14.89912 -14.64019 -14.26240 -13.94959 -13.73372 -13.57623 -12.91065 -12.68866 -12.45892 -12.30372 -12.18535 -11.87968 -11.76037 -11.70748 -11.60953 -11.34425 -11.25582 -11.17896 -10.99065 -10.74811 -10.72482 -10.52209 -10.21959 -10.17112 -10.02788 -9.68334 -9.45484 -9.08865 -8.42218 -7.47882 -6.07661 -4.06004 1.39558 2.42486 3.10484 3.30036 3.36974 3.40091 3.70063 4.19888 4.38504 4.75917 4.85531 4.87172 4.91301 5.26365 5.31256 5.38600 5.50800 5.58260 5.60464 5.66964 5.68756 5.74267 5.78714 5.95839 5.97986 5.99744 6.04871 6.13604 6.24380 6.27395 6.36290 6.44798 6.55541 6.68004 6.79524 7.06402 7.14904 7.21980 7.42960 7.76601 7.96260 8.04231 8.40869 8.41802 8.99630 9.55384 11.02850 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025510 B = 0.004496 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.365372 B = 6225.633249 C = 6737.499743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 C -0.127 4.127 4 C 0.068 3.932 5 N -0.529 5.529 6 C 0.194 3.806 7 C -0.506 4.506 8 H 0.080 0.920 9 C 0.056 3.944 10 N -0.897 5.897 11 Si 0.893 3.107 12 H -0.280 1.280 13 H -0.288 1.288 14 H -0.272 1.272 15 C 0.138 3.862 16 C 0.213 3.787 17 N -0.487 5.487 18 C 0.170 3.830 19 C -0.002 4.002 20 C -0.143 4.143 21 C -0.144 4.144 22 N -0.389 5.389 23 O 0.079 5.921 24 H 0.040 0.960 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.120 0.880 28 H 0.071 0.929 29 H 0.035 0.965 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.062 0.938 33 H 0.029 0.971 34 H 0.004 0.996 35 H 0.261 0.739 36 H 0.107 0.893 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.068 0.932 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.750 7.428 13.219 16.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.128 4.128 3 C -0.184 4.184 4 C -0.061 4.061 5 N -0.255 5.255 6 C 0.070 3.930 7 C -0.545 4.545 8 H 0.098 0.902 9 C -0.145 4.145 10 N -0.537 5.537 11 Si 0.720 3.280 12 H -0.206 1.206 13 H -0.214 1.214 14 H -0.196 1.196 15 C 0.008 3.992 16 C -0.007 4.007 17 N -0.222 5.222 18 C -0.103 4.103 19 C -0.022 4.022 20 C -0.201 4.201 21 C -0.202 4.202 22 N -0.098 5.098 23 O 0.023 5.977 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.137 0.863 28 H 0.090 0.910 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.081 0.919 33 H 0.047 0.953 34 H 0.022 0.978 35 H 0.071 0.929 36 H 0.125 0.875 37 H 0.090 0.910 38 H 0.117 0.883 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.643 8.345 13.459 16.811 hybrid contribution -0.267 -0.675 -0.868 1.131 sum -5.910 7.670 12.591 15.883 Atomic orbital electron populations 1.21819 0.97142 1.00754 1.00314 1.21559 0.93000 0.96864 1.01382 1.21624 1.02615 0.95582 0.98580 1.22140 0.87329 0.98477 0.98113 1.62211 1.08008 1.53589 1.01700 1.19855 0.95142 0.88533 0.89507 1.21335 1.43436 1.00261 0.89436 0.90224 1.24979 0.95464 0.94838 0.99250 1.69952 1.45174 1.08000 1.30536 0.86574 0.78630 0.78635 0.84121 1.20632 1.21385 1.19643 1.20634 1.02058 0.88619 0.87913 1.28984 0.85851 0.90484 0.95408 1.71929 1.20576 1.18535 1.11131 1.25721 0.94621 0.90276 0.99730 1.19492 0.93551 0.97581 0.91583 1.21833 1.01520 1.02420 0.94363 1.21835 1.01748 0.94992 1.01670 1.74529 1.08601 1.17496 1.09161 1.85293 1.41134 1.27125 1.44189 0.94131 0.93337 0.93326 0.86250 0.91014 0.94561 0.95311 0.95400 0.91948 0.95296 0.97811 0.92904 0.87459 0.90964 0.88309 0.91314 0.92394 0.91918 0.92181 0.91332 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.19 37.16 0.34 -1.99 16 2 C -0.11 -2.10 2.40 -90.62 -0.22 -2.32 16 3 C -0.13 -2.34 8.44 37.16 0.31 -2.03 16 4 C 0.07 1.29 4.29 -3.83 -0.02 1.28 16 5 N -0.53 -10.46 3.83 -237.52 -0.91 -11.37 16 6 C 0.19 4.56 4.76 -4.98 -0.02 4.54 16 7 C -0.51 -12.95 6.95 -34.44 -0.24 -13.19 16 8 H 0.08 2.01 4.60 -52.49 -0.24 1.76 16 9 C 0.06 1.50 5.46 -17.82 -0.10 1.40 16 10 N -0.90 -25.22 13.29 55.43 0.74 -24.48 16 11 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 15 C 0.14 2.28 5.57 -4.97 -0.03 2.25 16 16 C 0.21 3.52 7.19 -13.05 -0.09 3.43 16 17 N -0.49 -8.02 10.12 -9.87 -0.10 -8.12 16 18 C 0.17 2.55 6.72 -156.37 -1.05 1.50 16 19 C 0.00 -0.02 3.39 -91.77 -0.31 -0.33 16 20 C -0.14 -1.34 9.18 37.16 0.34 -1.00 16 21 C -0.14 -1.46 9.18 37.16 0.34 -1.12 16 22 N -0.39 -6.32 12.16 30.90 0.38 -5.94 16 23 O 0.08 1.33 11.31 18.10 0.20 1.54 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.12 2.66 4.84 -51.93 -0.25 2.41 16 28 H 0.07 1.46 6.80 -51.93 -0.35 1.10 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.03 0.56 7.77 -51.93 -0.40 0.15 16 32 H 0.06 1.16 5.68 -51.93 -0.29 0.87 16 33 H 0.03 0.71 7.79 -51.93 -0.40 0.30 16 34 H 0.00 0.10 7.76 -51.92 -0.40 -0.30 16 35 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.11 1.60 7.91 -51.93 -0.41 1.19 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.10 1.05 8.14 -51.92 -0.42 0.62 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 351.58 15.07 5.30 5.30 Total: -1.00 -27.96 351.58 -7.55 -35.51 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -7.39 Total: -0.55 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -0.74 Total: -7.59 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 0.10 Total: -49.92 kcal Atomic # 8 Polarization: 1.33 SS G_CDS: 0.20 Total: 1.54 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.96 -7.55 -35.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739914358.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.763 kcal (2) G-P(sol) polarization free energy of solvation -27.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds