Wall clock time and date at job start Tue Mar 31 2020 05:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47166 * 2 1 4 4 C 1.53005 * 109.47277 * 120.00049 * 2 1 3 5 5 N 1.46908 * 109.46895 * 179.36241 * 4 2 1 6 6 C 1.46902 * 110.99844 * 285.71501 * 5 4 2 7 7 C 1.50700 * 109.47052 * 75.45342 * 6 5 4 8 8 H 1.08001 * 119.99923 * 5.48045 * 7 6 5 9 9 C 1.37875 * 119.99977 * 185.47428 * 7 6 5 10 10 N 1.31517 * 120.00198 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99963 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47002 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47167 * 119.99825 * 11 9 7 14 14 H 1.48495 * 109.46793 * 239.99854 * 11 9 7 15 15 C 1.46894 * 110.99592 * 161.76394 * 5 4 2 16 16 C 1.50700 * 109.47448 * 296.97542 * 15 5 4 17 17 N 1.30277 * 126.28071 * 85.72833 * 16 15 5 18 18 N 1.28663 * 109.38278 * 180.02562 * 17 16 15 19 19 C 1.30276 * 109.38123 * 359.97438 * 18 17 16 20 20 C 1.50696 * 126.28448 * 179.97438 * 19 18 17 21 21 C 1.53009 * 109.47177 * 300.02217 * 20 19 18 22 22 C 1.52999 * 109.47539 * 60.02555 * 20 19 18 23 23 O 1.34358 * 126.28720 * 266.02238 * 16 15 5 24 24 H 1.09007 * 109.47153 * 299.99984 * 1 2 3 25 25 H 1.09001 * 109.47325 * 60.00091 * 1 2 3 26 26 H 1.09005 * 109.47250 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47153 * 240.00016 * 2 1 3 28 28 H 1.08997 * 109.47162 * 64.76911 * 3 2 1 29 29 H 1.09005 * 109.46816 * 184.77277 * 3 2 1 30 30 H 1.08997 * 109.46826 * 304.76488 * 3 2 1 31 31 H 1.08997 * 109.47078 * 59.36555 * 4 2 1 32 32 H 1.08998 * 109.46672 * 299.35945 * 4 2 1 33 33 H 1.08998 * 109.47009 * 195.45269 * 6 5 4 34 34 H 1.09003 * 109.47280 * 315.45760 * 6 5 4 35 35 H 0.96998 * 120.00351 * 179.97438 * 10 9 7 36 36 H 1.08995 * 109.47054 * 176.97496 * 15 5 4 37 37 H 1.09006 * 109.47312 * 56.97616 * 15 5 4 38 38 H 1.09005 * 109.47490 * 180.02562 * 20 19 18 39 39 H 1.09005 * 109.46171 * 60.00098 * 21 20 19 40 40 H 1.08993 * 109.47242 * 179.97438 * 21 20 19 41 41 H 1.08998 * 109.47380 * 300.00483 * 21 20 19 42 42 H 1.08993 * 109.47279 * 179.97438 * 22 20 19 43 43 H 1.09002 * 109.46566 * 300.00367 * 22 20 19 44 44 H 1.09003 * 109.46573 * 60.00038 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5090 -0.7346 1.2415 6 6 4.0215 -1.7005 0.2605 7 6 3.8661 -1.1365 -1.1283 8 1 3.5130 -0.1248 -1.2639 9 6 4.1747 -1.9118 -2.2258 10 7 4.6053 -3.1435 -2.0607 11 14 3.9828 -1.2124 -3.9473 12 1 3.4864 0.1846 -3.8614 13 1 5.2973 -1.2295 -4.6379 14 1 3.0116 -2.0363 -4.7108 15 6 4.0399 -1.0140 2.5823 16 6 3.6332 0.0901 3.5239 17 7 2.5128 0.1665 4.1842 18 7 2.5052 1.2427 4.8893 19 6 3.6208 1.8893 4.7033 20 6 4.0107 3.1972 5.3423 21 6 2.9949 4.2752 4.9585 22 6 4.0324 3.0352 6.8635 23 8 4.3571 1.1792 3.8322 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.7481 1.9311 0.9296 29 1 3.1266 1.4436 -0.0855 30 1 1.6086 1.9803 -0.8442 31 1 1.6674 -1.7456 1.2550 32 1 1.6861 -0.2008 2.1392 33 1 5.0758 -1.8943 0.4581 34 1 3.4598 -2.6314 0.3395 35 1 4.8221 -3.6891 -2.8328 36 1 5.1274 -1.0713 2.5378 37 1 3.6405 -1.9628 2.9409 38 1 5.0010 3.4908 4.9941 39 1 2.0046 3.9815 5.3068 40 1 3.2767 5.2210 5.4210 41 1 2.9795 4.3906 3.8748 42 1 4.3148 3.9811 7.3256 43 1 3.0420 2.7417 7.2117 44 1 4.7561 2.2673 7.1368 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739914420.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:09 Heat of formation + Delta-G solvation = 27.498003 kcal Electronic energy + Delta-G solvation = -23101.403116 eV Core-core repulsion = 19862.646972 eV Total energy + Delta-G solvation = -3238.756145 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.98959 -37.73284 -36.09556 -35.84214 -33.91975 -32.76100 -30.61386 -27.65545 -27.48572 -26.58780 -26.43386 -24.46055 -23.97115 -22.11808 -20.96680 -20.72458 -19.07427 -17.14842 -17.10446 -16.51751 -15.38897 -15.21935 -14.88507 -14.60696 -14.30051 -13.98193 -13.61672 -13.39459 -12.82592 -12.66171 -12.49860 -12.23916 -12.19324 -12.10215 -11.91194 -11.73961 -11.57856 -11.54545 -11.45328 -11.30232 -11.05348 -10.78155 -10.62430 -10.53793 -10.21119 -10.16649 -10.00715 -9.49752 -9.26556 -9.07721 -8.43229 -7.47227 -6.08315 -4.06739 1.37634 2.42857 2.59815 3.27873 3.36356 3.40577 3.90968 4.36818 4.43968 4.69846 4.71967 4.86101 4.91196 5.24601 5.26288 5.33690 5.44973 5.52743 5.55436 5.62965 5.66795 5.71874 5.75966 5.81014 5.92830 5.97309 5.98554 6.04291 6.16325 6.28978 6.37288 6.46531 6.57791 6.69191 6.80551 7.06212 7.14715 7.22085 7.43185 7.76495 7.96241 8.04058 8.40519 8.54645 8.99195 9.54683 11.02235 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023027 B = 0.004411 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.675215 B = 6345.932631 C = 6620.680022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 C -0.126 4.126 4 C 0.067 3.933 5 N -0.530 5.530 6 C 0.193 3.807 7 C -0.506 4.506 8 H 0.080 0.920 9 C 0.056 3.944 10 N -0.897 5.897 11 Si 0.892 3.108 12 H -0.270 1.270 13 H -0.284 1.284 14 H -0.285 1.285 15 C 0.141 3.859 16 C 0.196 3.804 17 N -0.293 5.293 18 N -0.286 5.286 19 C 0.151 3.849 20 C 0.006 3.994 21 C -0.145 4.145 22 C -0.144 4.144 23 O -0.218 6.218 24 H 0.041 0.959 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.119 0.881 28 H 0.028 0.972 29 H 0.069 0.931 30 H 0.036 0.964 31 H 0.029 0.971 32 H 0.062 0.938 33 H 0.028 0.972 34 H 0.004 0.996 35 H 0.261 0.739 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.279 10.873 12.989 16.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.128 4.128 3 C -0.184 4.184 4 C -0.061 4.061 5 N -0.256 5.256 6 C 0.069 3.931 7 C -0.544 4.544 8 H 0.098 0.902 9 C -0.146 4.146 10 N -0.537 5.537 11 Si 0.720 3.280 12 H -0.195 1.195 13 H -0.211 1.211 14 H -0.211 1.211 15 C 0.012 3.988 16 C -0.015 4.015 17 N -0.141 5.141 18 N -0.132 5.132 19 C -0.061 4.061 20 C -0.014 4.014 21 C -0.203 4.203 22 C -0.202 4.202 23 O -0.096 6.096 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.137 0.863 28 H 0.047 0.953 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.081 0.919 33 H 0.046 0.954 34 H 0.022 0.978 35 H 0.071 0.929 36 H 0.120 0.880 37 H 0.092 0.908 38 H 0.117 0.883 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.220 10.861 13.185 17.226 hybrid contribution 0.820 -0.338 -1.212 1.502 sum -1.401 10.523 11.974 16.002 Atomic orbital electron populations 1.21822 0.97043 1.00822 1.00394 1.21550 0.93091 0.96810 1.01301 1.21620 1.02470 0.95667 0.98616 1.22150 0.87244 0.98565 0.98190 1.62208 1.08083 1.53560 1.01762 1.19861 0.95071 0.88597 0.89570 1.21375 1.43323 1.00284 0.89414 0.90179 1.24985 0.95456 0.94852 0.99274 1.69960 1.45226 1.08037 1.30431 0.86519 0.77754 0.79345 0.84385 1.19452 1.21051 1.21081 1.20582 1.01869 0.88437 0.87958 1.28243 0.87058 0.88514 0.97721 1.74394 1.18063 1.13204 1.08401 1.74248 1.18400 1.01738 1.18850 1.27878 0.88119 0.97877 0.92234 1.19658 1.01357 0.84994 0.95378 1.21861 0.99053 0.96977 1.02375 1.21856 1.03484 1.02666 0.92155 1.84807 1.45732 1.29970 1.49087 0.93999 0.93325 0.93284 0.86308 0.95258 0.91171 0.94528 0.95291 0.91935 0.95432 0.97765 0.92949 0.87969 0.90792 0.88289 0.91137 0.90820 0.91956 0.90807 0.91117 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.19 37.15 0.34 -2.08 16 2 C -0.11 -2.15 2.40 -90.62 -0.22 -2.37 16 3 C -0.13 -2.39 8.44 37.16 0.31 -2.08 16 4 C 0.07 1.33 4.29 -3.82 -0.02 1.32 16 5 N -0.53 -10.91 3.83 -237.51 -0.91 -11.82 16 6 C 0.19 4.66 4.76 -4.98 -0.02 4.64 16 7 C -0.51 -13.14 6.95 -34.44 -0.24 -13.38 16 8 H 0.08 2.05 4.60 -52.49 -0.24 1.81 16 9 C 0.06 1.50 5.46 -17.82 -0.10 1.40 16 10 N -0.90 -25.47 13.29 55.43 0.74 -24.73 16 11 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 C 0.14 2.48 5.57 -4.98 -0.03 2.46 16 16 C 0.20 3.44 7.17 -12.94 -0.09 3.35 16 17 N -0.29 -5.38 10.78 32.55 0.35 -5.03 16 18 N -0.29 -4.82 12.22 32.55 0.40 -4.43 16 19 C 0.15 2.20 6.99 -12.94 -0.09 2.11 16 20 C 0.01 0.06 3.39 -91.77 -0.31 -0.25 16 21 C -0.14 -1.27 9.18 37.16 0.34 -0.93 16 22 C -0.14 -1.15 9.18 37.16 0.34 -0.81 16 23 O -0.22 -3.62 10.87 5.40 0.06 -3.56 16 24 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.12 2.69 4.84 -51.92 -0.25 2.44 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 1.45 6.80 -51.93 -0.35 1.10 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.03 0.60 7.77 -51.93 -0.40 0.19 16 32 H 0.06 1.24 5.67 -51.93 -0.29 0.94 16 33 H 0.03 0.69 7.79 -51.93 -0.40 0.29 16 34 H 0.00 0.12 7.76 -51.93 -0.40 -0.29 16 35 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.10 1.65 7.91 -51.93 -0.41 1.24 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 352.10 15.07 5.31 5.31 Total: -1.00 -29.42 352.10 -6.25 -35.68 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -7.39 Total: -0.65 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: 0.22 Total: -6.62 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: 0.58 Total: -46.02 kcal Atomic # 8 Polarization: -3.62 SS G_CDS: 0.06 Total: -3.56 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.42 -6.25 -35.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739914420.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.175 kcal (2) G-P(sol) polarization free energy of solvation -29.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds