Wall clock time and date at job start Tue Mar 31 2020 05:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46861 * 2 1 4 4 C 1.52996 * 109.47443 * 119.99878 * 2 1 3 5 5 N 1.46908 * 109.47116 * 60.95635 * 4 2 1 6 6 C 1.46898 * 110.99713 * 73.48657 * 5 4 2 7 7 C 1.50703 * 109.47239 * 279.61118 * 6 5 4 8 8 H 1.07997 * 120.00286 * 2.96902 * 7 6 5 9 9 C 1.37883 * 119.99696 * 182.97287 * 7 6 5 10 10 N 1.31514 * 119.99817 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99716 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46838 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.46927 * 119.99673 * 11 9 7 14 14 H 1.48498 * 109.46711 * 239.99790 * 11 9 7 15 15 C 1.46895 * 111.00390 * 197.44259 * 5 4 2 16 16 C 1.50703 * 109.46926 * 66.04553 * 15 5 4 17 17 N 1.29950 * 126.28745 * 270.02374 * 16 15 5 18 18 O 1.21303 * 110.24822 * 179.68516 * 17 16 15 19 19 C 1.33639 * 109.81211 * 0.47047 * 18 17 16 20 20 C 1.50704 * 126.55228 * 179.79950 * 19 18 17 21 21 C 1.53005 * 109.47056 * 59.69081 * 20 19 18 22 22 C 1.52998 * 109.47079 * 299.68889 * 20 19 18 23 23 N 1.31135 * 106.89805 * 359.53916 * 19 18 17 24 24 H 1.08993 * 109.47298 * 299.99856 * 1 2 3 25 25 H 1.09004 * 109.47097 * 60.00048 * 1 2 3 26 26 H 1.09002 * 109.46930 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47631 * 240.00077 * 2 1 3 28 28 H 1.09007 * 109.47072 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47482 * 299.99940 * 3 2 1 30 30 H 1.09000 * 109.47028 * 60.00429 * 3 2 1 31 31 H 1.09001 * 109.47278 * 300.96159 * 4 2 1 32 32 H 1.08999 * 109.47773 * 180.95948 * 4 2 1 33 33 H 1.09002 * 109.46886 * 39.60888 * 6 5 4 34 34 H 1.08996 * 109.47122 * 159.60883 * 6 5 4 35 35 H 0.97005 * 119.99478 * 180.02562 * 10 9 7 36 36 H 1.09000 * 109.47003 * 306.04682 * 15 5 4 37 37 H 1.08994 * 109.47307 * 186.04683 * 15 5 4 38 38 H 1.08999 * 109.47246 * 179.68323 * 20 19 18 39 39 H 1.09004 * 109.47451 * 59.99474 * 21 20 19 40 40 H 1.09007 * 109.46728 * 299.99913 * 21 20 19 41 41 H 1.08994 * 109.47045 * 180.02562 * 21 20 19 42 42 H 1.09003 * 109.46658 * 179.97438 * 22 20 19 43 43 H 1.08998 * 109.46869 * 299.99500 * 22 20 19 44 44 H 1.09001 * 109.46851 * 59.99881 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.5693 -2.1128 1.2377 6 6 2.3025 -2.9082 0.2439 7 6 1.7247 -2.6578 -1.1253 8 1 0.9278 -1.9401 -1.2521 9 6 2.2137 -3.3451 -2.2160 10 7 3.1845 -4.2187 -2.0616 11 14 1.4981 -3.0341 -3.9133 12 1 0.4252 -2.0118 -3.8184 13 1 2.5683 -2.5465 -4.8199 14 1 0.9315 -4.2973 -4.4505 15 6 1.6727 -2.7146 2.5738 16 6 0.7188 -2.0212 3.5121 17 7 0.9802 -0.9788 4.2428 18 8 0.0011 -0.6590 4.8835 19 6 -1.0054 -1.4983 4.6219 20 6 -2.3903 -1.4513 5.2143 21 6 -3.0458 -0.1115 4.8732 22 6 -2.3002 -1.6028 6.7341 23 7 -0.5595 -2.3673 3.7468 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 1.6627 -0.2174 2.1391 32 1 3.1299 -0.7063 1.2579 33 1 3.3539 -2.6210 0.2527 34 1 2.2129 -3.9667 0.4880 35 1 3.5287 -4.7020 -2.8291 36 1 2.6917 -2.6038 2.9443 37 1 1.4202 -3.7733 2.5159 38 1 -2.9893 -2.2638 4.8030 39 1 -3.1099 -0.0035 3.7904 40 1 -2.4468 0.7011 5.2845 41 1 -4.0472 -0.0773 5.3021 42 1 -3.3019 -1.5683 7.1626 43 1 -1.8334 -2.5573 6.9770 44 1 -1.7013 -0.7902 7.1453 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739914618.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:07 Heat of formation + Delta-G solvation = 56.579472 kcal Electronic energy + Delta-G solvation = -23102.082291 eV Core-core repulsion = 19864.587214 eV Total energy + Delta-G solvation = -3237.495078 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.34666 -37.75763 -36.37630 -35.40859 -33.64014 -32.58126 -31.24113 -28.02752 -27.52655 -26.65785 -26.45419 -24.38685 -24.13114 -22.73206 -21.10958 -19.95486 -19.06081 -17.86950 -17.14913 -16.36849 -15.96375 -15.18386 -14.70065 -14.62746 -14.15102 -13.94818 -13.59218 -13.47938 -12.73472 -12.72885 -12.54276 -12.33530 -12.17442 -11.92832 -11.77709 -11.68746 -11.60495 -11.41278 -11.28601 -11.14467 -11.06195 -10.76829 -10.65645 -10.54393 -10.21516 -10.15371 -9.96873 -9.63723 -9.43849 -9.08223 -8.38223 -7.35302 -6.01522 -4.00157 1.36745 2.51140 2.94243 3.31833 3.39817 3.44497 3.79719 4.28167 4.44871 4.60243 4.68811 4.83682 4.96887 5.24479 5.28483 5.33196 5.45952 5.49921 5.60198 5.60874 5.67509 5.78371 5.87389 5.91211 5.93038 5.95990 6.08831 6.10862 6.24870 6.31389 6.32726 6.43030 6.52876 6.67903 6.78934 7.12433 7.19514 7.25633 7.39418 7.84386 8.06292 8.14614 8.45440 8.49557 9.06433 9.61840 11.09153 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021134 B = 0.004478 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.579159 B = 6251.327075 C = 6480.674775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.105 4.105 3 C -0.143 4.143 4 C 0.070 3.930 5 N -0.525 5.525 6 C 0.194 3.806 7 C -0.502 4.502 8 H 0.079 0.921 9 C 0.054 3.946 10 N -0.899 5.899 11 Si 0.893 3.107 12 H -0.271 1.271 13 H -0.286 1.286 14 H -0.285 1.285 15 C 0.140 3.860 16 C 0.198 3.802 17 N -0.389 5.389 18 O 0.071 5.929 19 C 0.169 3.831 20 C 0.003 3.997 21 C -0.151 4.151 22 C -0.150 4.150 23 N -0.463 5.463 24 H 0.027 0.973 25 H 0.036 0.964 26 H 0.074 0.926 27 H 0.113 0.887 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.040 0.960 31 H 0.052 0.948 32 H 0.025 0.975 33 H -0.004 1.004 34 H 0.031 0.969 35 H 0.260 0.740 36 H 0.050 0.950 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.751 7.449 14.743 19.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.124 4.124 3 C -0.201 4.201 4 C -0.058 4.058 5 N -0.251 5.251 6 C 0.069 3.931 7 C -0.540 4.540 8 H 0.097 0.903 9 C -0.147 4.147 10 N -0.539 5.539 11 Si 0.721 3.279 12 H -0.195 1.195 13 H -0.212 1.212 14 H -0.211 1.211 15 C 0.010 3.990 16 C -0.075 4.075 17 N -0.098 5.098 18 O 0.014 5.986 19 C -0.053 4.053 20 C -0.018 4.018 21 C -0.209 4.209 22 C -0.208 4.208 23 N -0.196 5.196 24 H 0.046 0.954 25 H 0.055 0.945 26 H 0.093 0.907 27 H 0.131 0.869 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.043 0.957 33 H 0.014 0.986 34 H 0.049 0.951 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.119 0.881 38 H 0.132 0.868 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.349 7.347 14.230 18.544 hybrid contribution 0.514 0.091 -0.679 0.857 sum -8.834 7.438 13.550 17.804 Atomic orbital electron populations 1.21627 0.95746 1.02544 0.98504 1.21426 0.95990 0.94038 1.00897 1.21828 1.00449 0.97363 1.00436 1.22073 0.96535 0.89550 0.97651 1.62106 1.58482 1.02221 1.02258 1.19845 0.91206 0.92485 0.89530 1.21410 1.19178 1.22699 0.90723 0.90340 1.24996 0.95244 0.95231 0.99206 1.69969 1.27040 1.26302 1.30583 0.86514 0.79035 0.78148 0.84244 1.19517 1.21194 1.21083 1.20368 0.92528 0.98095 0.87978 1.25944 0.91554 0.92282 0.97712 1.74645 1.07669 1.16934 1.10507 1.85222 1.15961 1.46423 1.51026 1.28784 0.95289 0.86841 0.94364 1.19772 0.84310 1.01537 0.96152 1.21907 1.01058 0.95060 1.02863 1.21902 1.03262 1.02971 0.92632 1.71925 1.08577 1.25281 1.13781 0.95363 0.94466 0.90704 0.86887 0.93345 0.93187 0.94065 0.92952 0.95714 0.98585 0.95098 0.93057 0.93171 0.88067 0.86764 0.91632 0.91593 0.90664 0.90652 0.91890 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 8.40 37.16 0.31 -2.13 16 2 C -0.11 -2.09 2.40 -90.62 -0.22 -2.31 16 3 C -0.14 -2.39 9.19 37.16 0.34 -2.04 16 4 C 0.07 1.44 4.27 -3.82 -0.02 1.42 16 5 N -0.52 -11.45 3.70 -237.52 -0.88 -12.33 16 6 C 0.19 4.92 4.79 -4.98 -0.02 4.90 16 7 C -0.50 -13.55 7.24 -34.44 -0.25 -13.79 16 8 H 0.08 2.08 4.58 -52.49 -0.24 1.84 16 9 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 10 N -0.90 -26.27 13.29 55.43 0.74 -25.54 16 11 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 C 0.14 2.71 5.55 -4.98 -0.03 2.69 16 16 C 0.20 3.63 6.89 -156.37 -1.08 2.56 16 17 N -0.39 -6.82 11.03 30.90 0.34 -6.48 16 18 O 0.07 1.07 11.31 18.11 0.20 1.28 16 19 C 0.17 2.32 7.02 -13.05 -0.09 2.22 16 20 C 0.00 0.02 3.39 -91.77 -0.31 -0.29 16 21 C -0.15 -1.13 9.18 37.16 0.34 -0.79 16 22 C -0.15 -1.01 9.18 37.16 0.34 -0.66 16 23 N -0.46 -7.97 11.55 -9.86 -0.11 -8.08 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.07 1.62 6.74 -51.93 -0.35 1.27 16 27 H 0.11 2.59 5.14 -51.93 -0.27 2.32 16 28 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 1.04 6.04 -51.93 -0.31 0.73 16 32 H 0.02 0.52 7.74 -51.93 -0.40 0.12 16 33 H 0.00 -0.10 7.67 -51.93 -0.40 -0.50 16 34 H 0.03 0.83 7.65 -51.93 -0.40 0.44 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.05 0.93 8.12 -51.93 -0.42 0.51 16 37 H 0.10 1.92 7.80 -51.93 -0.41 1.52 16 38 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 352.18 15.07 5.31 5.31 Total: -1.00 -30.41 352.18 -7.60 -38.01 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -7.40 Total: -1.78 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -0.78 Total: -6.82 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: 0.09 Total: -52.42 kcal Atomic # 8 Polarization: 1.07 SS G_CDS: 0.20 Total: 1.28 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.41 -7.60 -38.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739914618.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.590 kcal (2) G-P(sol) polarization free energy of solvation -30.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds