Wall clock time and date at job start Tue Mar 31 2020 05:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34947 * 126.03669 * 2 1 4 4 C 1.35314 * 107.74841 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.04240 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.46959 * 339.99739 * 5 4 3 7 7 O 1.42898 * 109.46964 * 219.99768 * 5 4 3 8 8 C 1.52997 * 109.47078 * 99.99651 * 5 4 3 9 9 N 1.46905 * 109.47150 * 184.99848 * 8 5 4 10 10 C 1.46900 * 111.00154 * 180.02562 * 9 8 5 11 11 C 1.52998 * 109.47093 * 180.02562 * 10 9 8 12 12 C 1.52993 * 109.47173 * 300.00058 * 11 10 9 13 13 C 1.52999 * 109.46976 * 60.00101 * 11 10 9 14 14 C 1.53000 * 109.46879 * 179.97438 * 11 10 9 15 15 C 1.50702 * 109.47090 * 180.02562 * 14 11 10 16 16 H 1.08003 * 119.99817 * 359.97438 * 15 14 11 17 17 C 1.37877 * 119.99981 * 180.02562 * 15 14 11 18 18 N 1.31522 * 119.99854 * 179.97438 * 17 15 14 19 19 Si 1.86791 * 120.00063 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.47209 * 90.00728 * 19 17 15 21 21 H 1.48505 * 109.47027 * 210.00162 * 19 17 15 22 22 H 1.48501 * 109.47255 * 330.00452 * 19 17 15 23 23 C 1.39873 * 107.91835 * 0.26186 * 4 3 2 24 24 N 1.30835 * 108.20244 * 359.55923 * 23 4 3 25 25 H 1.09007 * 109.47316 * 89.99941 * 1 2 3 26 26 H 1.09004 * 109.47024 * 209.99363 * 1 2 3 27 27 H 1.08998 * 109.47246 * 329.99475 * 1 2 3 28 28 H 1.08005 * 126.12899 * 359.96069 * 3 2 1 29 29 H 0.96698 * 113.99898 * 299.99550 * 7 5 4 30 30 H 1.09001 * 109.47630 * 305.00104 * 8 5 4 31 31 H 1.09004 * 109.47346 * 65.00234 * 8 5 4 32 32 H 1.00895 * 111.00168 * 303.95574 * 9 8 5 33 33 H 1.09004 * 109.47150 * 300.00195 * 10 9 8 34 34 H 1.08999 * 109.47196 * 60.00064 * 10 9 8 35 35 H 1.08993 * 109.47585 * 59.99785 * 12 11 10 36 36 H 1.09004 * 109.47186 * 180.02562 * 12 11 10 37 37 H 1.09009 * 109.46860 * 300.00047 * 12 11 10 38 38 H 1.09004 * 109.47271 * 60.00006 * 13 11 10 39 39 H 1.09004 * 109.46672 * 179.97438 * 13 11 10 40 40 H 1.08996 * 109.47250 * 299.99529 * 13 11 10 41 41 H 1.09004 * 109.47267 * 299.99932 * 14 11 10 42 42 H 1.08999 * 109.47292 * 59.99931 * 14 11 10 43 43 H 0.96996 * 120.00216 * 179.97438 * 18 17 15 44 44 H 1.08000 * 125.89813 * 179.73483 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 0.0006 5 6 4.7680 1.5454 0.0013 6 1 4.5002 2.5418 -0.3502 7 8 5.7572 0.9847 -0.8642 8 6 5.3276 1.6391 1.4222 9 7 6.4478 2.5891 1.4456 10 6 7.0120 2.7046 2.7970 11 6 8.1731 3.7009 2.7815 12 6 9.2546 3.2087 1.8178 13 6 7.6650 5.0690 2.3223 14 6 8.7602 3.8217 4.1892 15 6 9.9035 4.8034 4.1741 16 1 10.1835 5.2920 3.2525 17 6 10.5925 5.0771 5.3366 18 7 11.5906 5.9336 5.3232 19 14 10.1086 4.2316 6.9303 20 1 10.8713 2.9650 7.0701 21 1 10.4160 5.1236 8.0771 22 1 8.6538 3.9338 6.9108 23 6 3.5347 -0.7321 -0.0051 24 7 2.2892 -1.1328 0.0005 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.9281 2.1194 -0.0006 29 1 6.0434 0.0965 -0.6111 30 1 4.5453 1.9830 2.0989 31 1 5.6774 0.6570 1.7405 32 1 7.1582 2.3270 0.7788 33 1 6.2416 3.0558 3.4836 34 1 7.3735 1.7299 3.1244 35 1 8.8360 3.1229 0.8151 36 1 10.0820 3.9182 1.8071 37 1 9.6165 2.2339 2.1450 38 1 6.8945 5.4197 3.0089 39 1 8.4922 5.7789 2.3117 40 1 7.2465 4.9833 1.3195 41 1 7.9895 4.1726 4.8755 42 1 9.1220 2.8471 4.5169 43 1 12.0751 6.1264 6.1411 44 1 4.4054 -1.3709 -0.0102 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000742376437.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:33 Heat of formation + Delta-G solvation = 16.481972 kcal Electronic energy + Delta-G solvation = -21959.460924 eV Core-core repulsion = 18720.227089 eV Total energy + Delta-G solvation = -3239.233836 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.55945 -38.22045 -37.02723 -33.94864 -33.50725 -32.14038 -31.12138 -28.51917 -27.54093 -26.57041 -26.31339 -24.68726 -22.69671 -21.67758 -21.37173 -20.52991 -17.87504 -17.71127 -16.78526 -16.23342 -15.76358 -15.73217 -15.01293 -14.75174 -14.47486 -14.08181 -14.03612 -13.33116 -13.28048 -13.21419 -12.89810 -12.78034 -12.62231 -12.22903 -12.08008 -11.80980 -11.59595 -11.05138 -10.91771 -10.86285 -10.78876 -10.45316 -10.38672 -10.21770 -9.77748 -9.75049 -9.63618 -9.25521 -8.87807 -8.68273 -8.46880 -8.10831 -5.97173 -3.93013 1.55370 2.18095 2.44376 3.33809 3.41529 3.45263 4.08098 4.29555 4.46466 4.50743 4.55862 4.71742 4.77940 4.97568 5.04333 5.07835 5.17173 5.35864 5.38682 5.54802 5.61696 5.72669 5.76760 5.93995 6.04872 6.19763 6.29913 6.31074 6.47726 6.64103 6.65620 6.74133 6.85057 7.12991 7.18835 7.22578 7.33121 7.34718 7.38158 7.50411 7.52770 7.72550 7.88754 8.63247 9.09223 9.66068 11.15998 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031467 B = 0.002928 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.597286 B = 9559.143365 C = 9899.144595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.377 5.377 3 C 0.068 3.932 4 C -0.266 4.266 5 C 0.189 3.811 6 H 0.111 0.889 7 O -0.553 6.553 8 C 0.034 3.966 9 N -0.683 5.683 10 C 0.068 3.932 11 C -0.048 4.048 12 C -0.131 4.131 13 C -0.118 4.118 14 C -0.005 4.005 15 C -0.505 4.505 16 H 0.078 0.922 17 C 0.064 3.936 18 N -0.906 5.906 19 Si 0.876 3.124 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.267 1.267 23 C 0.057 3.943 24 N -0.298 5.298 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.176 0.824 29 H 0.370 0.630 30 H 0.075 0.925 31 H 0.027 0.973 32 H 0.346 0.654 33 H 0.064 0.936 34 H 0.021 0.979 35 H 0.038 0.962 36 H 0.069 0.931 37 H 0.039 0.961 38 H 0.038 0.962 39 H 0.059 0.941 40 H 0.045 0.955 41 H 0.014 0.986 42 H 0.007 0.993 43 H 0.261 0.739 44 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.947 -11.875 -11.260 26.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.160 5.160 3 C -0.078 4.078 4 C -0.279 4.279 5 C 0.128 3.872 6 H 0.129 0.871 7 O -0.357 6.357 8 C -0.096 4.096 9 N -0.316 5.316 10 C -0.061 4.061 11 C -0.049 4.049 12 C -0.189 4.189 13 C -0.175 4.175 14 C -0.043 4.043 15 C -0.543 4.543 16 H 0.096 0.904 17 C -0.137 4.137 18 N -0.546 5.546 19 Si 0.703 3.297 20 H -0.205 1.205 21 H -0.216 1.216 22 H -0.192 1.192 23 C -0.129 4.129 24 N -0.119 5.119 25 H 0.093 0.907 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.194 0.806 29 H 0.216 0.784 30 H 0.094 0.906 31 H 0.045 0.955 32 H 0.166 0.834 33 H 0.082 0.918 34 H 0.039 0.961 35 H 0.057 0.943 36 H 0.088 0.912 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.032 0.968 42 H 0.026 0.974 43 H 0.071 0.929 44 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -22.264 -11.677 -11.376 27.594 hybrid contribution 0.770 -1.124 1.526 2.046 sum -21.493 -12.801 -9.850 26.886 Atomic orbital electron populations 1.21873 0.74142 1.04588 1.03424 1.48509 1.06706 1.03844 1.56896 1.22344 0.90642 0.93553 1.01298 1.20830 0.95509 0.94593 1.16926 1.20122 0.82838 0.95043 0.89195 0.87141 1.86632 1.58945 1.35405 1.54741 1.22609 0.95545 0.94549 0.96873 1.60492 1.12609 1.50155 1.08307 1.22129 0.97111 0.97804 0.89033 1.20408 0.92560 0.94294 0.97609 1.21785 0.99357 1.00829 0.96887 1.21612 1.00259 0.96345 0.99271 1.19639 0.96381 0.96610 0.91655 1.21148 1.13235 1.23326 0.96625 0.90382 1.25023 0.94857 0.94993 0.98790 1.69912 1.21636 1.35062 1.27980 0.86848 0.79472 0.79546 0.83785 1.20539 1.21589 1.19160 1.23648 0.95290 0.94408 0.99547 1.77356 1.01646 1.08289 1.24583 0.90695 0.89296 0.89343 0.80640 0.78379 0.90618 0.95507 0.83365 0.91798 0.96067 0.94328 0.91208 0.94229 0.94322 0.92162 0.93557 0.96766 0.97442 0.92926 0.80223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.47 11.47 59.85 0.69 1.16 16 2 N -0.38 -3.38 4.01 -68.16 -0.27 -3.65 16 3 C 0.07 0.58 11.40 -17.22 -0.20 0.38 16 4 C -0.27 -2.55 5.12 -105.05 -0.54 -3.09 16 5 C 0.19 1.89 3.66 -27.88 -0.10 1.79 16 6 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 7 O -0.55 -5.79 12.78 -35.23 -0.45 -6.24 16 8 C 0.03 0.39 5.34 -3.82 -0.02 0.37 16 9 N -0.68 -9.42 5.71 -113.77 -0.65 -10.07 16 10 C 0.07 1.11 4.65 -3.83 -0.02 1.10 16 11 C -0.05 -0.94 0.60 -154.51 -0.09 -1.03 16 12 C -0.13 -2.44 7.89 37.15 0.29 -2.15 16 13 C -0.12 -2.27 8.06 37.16 0.30 -1.97 16 14 C -0.01 -0.12 3.11 -27.88 -0.09 -0.21 16 15 C -0.51 -14.02 8.20 -34.44 -0.28 -14.30 16 16 H 0.08 2.31 5.92 -52.48 -0.31 2.00 16 17 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 18 N -0.91 -27.92 13.96 55.43 0.77 -27.15 16 19 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 23 C 0.06 0.57 11.44 -17.36 -0.20 0.37 16 24 N -0.30 -3.33 12.58 30.63 0.39 -2.94 16 25 H 0.07 0.27 8.14 -51.92 -0.42 -0.15 16 26 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.18 0.96 8.06 -52.48 -0.42 0.54 16 29 H 0.37 2.68 8.35 45.56 0.38 3.06 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.35 4.80 6.33 -39.29 -0.25 4.55 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.04 0.62 6.57 -51.93 -0.34 0.28 16 36 H 0.07 1.47 6.62 -51.93 -0.34 1.12 16 37 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 40 H 0.05 0.81 7.60 -51.93 -0.39 0.41 16 41 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 42 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.18 1.28 7.75 -52.49 -0.41 0.88 16 LS Contribution 351.98 15.07 5.30 5.30 Total: -1.00 -33.58 351.98 -6.53 -40.11 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -6.59 Total: 3.24 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -0.35 Total: -15.84 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: 0.24 Total: -43.81 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -0.45 Total: -6.24 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.58 -6.53 -40.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742376437.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.592 kcal (2) G-P(sol) polarization free energy of solvation -33.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds