Wall clock time and date at job start Tue Mar 31 2020 05:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34947 * 126.03669 * 2 1 4 4 C 1.35314 * 107.74841 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.04240 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.46959 * 339.99739 * 5 4 3 7 7 O 1.42898 * 109.46964 * 219.99768 * 5 4 3 8 8 C 1.52997 * 109.47078 * 99.99651 * 5 4 3 9 9 N 1.46905 * 109.47150 * 184.99848 * 8 5 4 10 10 C 1.46900 * 111.00154 * 180.02562 * 9 8 5 11 11 C 1.52998 * 109.47093 * 180.02562 * 10 9 8 12 12 C 1.52993 * 109.47173 * 300.00058 * 11 10 9 13 13 C 1.52999 * 109.46976 * 60.00101 * 11 10 9 14 14 C 1.53000 * 109.46879 * 179.97438 * 11 10 9 15 15 C 1.50702 * 109.47090 * 180.02562 * 14 11 10 16 16 H 1.08003 * 119.99817 * 359.97438 * 15 14 11 17 17 C 1.37877 * 119.99981 * 180.02562 * 15 14 11 18 18 N 1.31522 * 119.99854 * 179.97438 * 17 15 14 19 19 Si 1.86791 * 120.00063 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.47209 * 90.00728 * 19 17 15 21 21 H 1.48505 * 109.47027 * 210.00162 * 19 17 15 22 22 H 1.48501 * 109.47255 * 330.00452 * 19 17 15 23 23 C 1.39873 * 107.91835 * 0.26186 * 4 3 2 24 24 N 1.30835 * 108.20244 * 359.55923 * 23 4 3 25 25 H 1.09007 * 109.47316 * 89.99941 * 1 2 3 26 26 H 1.09004 * 109.47024 * 209.99363 * 1 2 3 27 27 H 1.08998 * 109.47246 * 329.99475 * 1 2 3 28 28 H 1.08005 * 126.12899 * 359.96069 * 3 2 1 29 29 H 0.96698 * 113.99898 * 299.99550 * 7 5 4 30 30 H 1.09001 * 109.47630 * 305.00104 * 8 5 4 31 31 H 1.09004 * 109.47346 * 65.00234 * 8 5 4 32 32 H 1.00895 * 111.00168 * 303.95574 * 9 8 5 33 33 H 1.09004 * 109.47150 * 300.00195 * 10 9 8 34 34 H 1.08999 * 109.47196 * 60.00064 * 10 9 8 35 35 H 1.08993 * 109.47585 * 59.99785 * 12 11 10 36 36 H 1.09004 * 109.47186 * 180.02562 * 12 11 10 37 37 H 1.09009 * 109.46860 * 300.00047 * 12 11 10 38 38 H 1.09004 * 109.47271 * 60.00006 * 13 11 10 39 39 H 1.09004 * 109.46672 * 179.97438 * 13 11 10 40 40 H 1.08996 * 109.47250 * 299.99529 * 13 11 10 41 41 H 1.09004 * 109.47267 * 299.99932 * 14 11 10 42 42 H 1.08999 * 109.47292 * 59.99931 * 14 11 10 43 43 H 0.96996 * 120.00216 * 179.97438 * 18 17 15 44 44 H 1.08000 * 125.89813 * 179.73483 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 0.0006 5 6 4.7680 1.5454 0.0013 6 1 4.5002 2.5418 -0.3502 7 8 5.7572 0.9847 -0.8642 8 6 5.3276 1.6391 1.4222 9 7 6.4478 2.5891 1.4456 10 6 7.0120 2.7046 2.7970 11 6 8.1731 3.7009 2.7815 12 6 9.2546 3.2087 1.8178 13 6 7.6650 5.0690 2.3223 14 6 8.7602 3.8217 4.1892 15 6 9.9035 4.8034 4.1741 16 1 10.1835 5.2920 3.2525 17 6 10.5925 5.0771 5.3366 18 7 11.5906 5.9336 5.3232 19 14 10.1086 4.2316 6.9303 20 1 10.8713 2.9650 7.0701 21 1 10.4160 5.1236 8.0771 22 1 8.6538 3.9338 6.9108 23 6 3.5347 -0.7321 -0.0051 24 7 2.2892 -1.1328 0.0005 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.9281 2.1194 -0.0006 29 1 6.0434 0.0965 -0.6111 30 1 4.5453 1.9830 2.0989 31 1 5.6774 0.6570 1.7405 32 1 7.1582 2.3270 0.7788 33 1 6.2416 3.0558 3.4836 34 1 7.3735 1.7299 3.1244 35 1 8.8360 3.1229 0.8151 36 1 10.0820 3.9182 1.8071 37 1 9.6165 2.2339 2.1450 38 1 6.8945 5.4197 3.0089 39 1 8.4922 5.7789 2.3117 40 1 7.2465 4.9833 1.3195 41 1 7.9895 4.1726 4.8755 42 1 9.1220 2.8471 4.5169 43 1 12.0751 6.1264 6.1411 44 1 4.4054 -1.3709 -0.0102 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742376437.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:32 Heat of formation + Delta-G solvation = -8.656977 kcal Electronic energy + Delta-G solvation = -21960.551031 eV Core-core repulsion = 18720.227089 eV Total energy + Delta-G solvation = -3240.323942 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.19915 -39.40334 -38.14401 -35.32361 -34.10931 -34.01322 -31.92061 -29.87097 -28.84507 -27.88204 -27.39098 -25.97934 -24.01527 -23.00294 -22.01811 -21.21826 -19.44937 -18.84700 -18.37045 -17.20074 -16.57487 -16.35866 -16.30060 -15.78170 -15.69861 -15.47789 -15.17606 -14.69975 -14.37380 -14.30635 -13.94037 -13.78658 -13.53860 -13.47982 -13.33982 -13.04709 -12.75064 -12.74264 -12.37422 -12.32260 -12.16969 -12.03465 -11.71461 -11.58140 -11.33020 -11.20713 -10.89853 -10.70997 -10.68290 -10.39513 -9.37329 -9.19903 -8.20053 -6.20133 0.93005 1.36457 1.38372 1.49546 1.68023 1.76068 2.40842 3.14848 3.26939 3.60726 3.78644 4.00163 4.10850 4.19472 4.26088 4.32037 4.33962 4.38051 4.43514 4.47701 4.68716 4.71351 4.77831 4.82626 4.88763 4.93776 4.96067 5.07726 5.13181 5.23064 5.32893 5.40527 5.47676 5.56412 5.64447 5.65892 5.79254 5.85084 6.10877 6.17508 6.44481 6.61129 6.69522 6.87378 6.91240 7.42158 8.96237 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031467 B = 0.002928 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.597286 B = 9559.143365 C = 9899.144595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.381 5.381 3 C 0.070 3.930 4 C -0.282 4.282 5 C 0.202 3.798 6 H 0.106 0.894 7 O -0.567 6.567 8 C 0.040 3.960 9 N -0.683 5.683 10 C 0.081 3.919 11 C -0.048 4.048 12 C -0.124 4.124 13 C -0.109 4.109 14 C -0.004 4.004 15 C -0.502 4.502 16 H 0.044 0.956 17 C -0.001 4.001 18 N -0.955 5.955 19 Si 0.941 3.059 20 H -0.271 1.271 21 H -0.289 1.289 22 H -0.249 1.249 23 C 0.050 3.950 24 N -0.337 5.337 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.114 0.886 28 H 0.205 0.795 29 H 0.383 0.617 30 H 0.075 0.925 31 H 0.033 0.967 32 H 0.347 0.653 33 H 0.064 0.936 34 H 0.025 0.975 35 H 0.066 0.934 36 H 0.035 0.965 37 H 0.044 0.956 38 H 0.038 0.962 39 H 0.026 0.974 40 H 0.067 0.933 41 H 0.013 0.987 42 H 0.011 0.989 43 H 0.262 0.738 44 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.260 -13.256 -11.293 29.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.163 5.163 3 C -0.077 4.077 4 C -0.294 4.294 5 C 0.142 3.858 6 H 0.124 0.876 7 O -0.374 6.374 8 C -0.090 4.090 9 N -0.316 5.316 10 C -0.049 4.049 11 C -0.049 4.049 12 C -0.182 4.182 13 C -0.166 4.166 14 C -0.042 4.042 15 C -0.540 4.540 16 H 0.063 0.937 17 C -0.196 4.196 18 N -0.597 5.597 19 Si 0.766 3.234 20 H -0.196 1.196 21 H -0.215 1.215 22 H -0.173 1.173 23 C -0.136 4.136 24 N -0.159 5.159 25 H 0.104 0.896 26 H 0.107 0.893 27 H 0.132 0.868 28 H 0.222 0.778 29 H 0.231 0.769 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.167 0.833 33 H 0.082 0.918 34 H 0.043 0.957 35 H 0.085 0.915 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.046 0.954 40 H 0.086 0.914 41 H 0.031 0.969 42 H 0.029 0.971 43 H 0.071 0.929 44 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -24.608 -13.089 -11.424 30.123 hybrid contribution 1.458 -0.659 1.428 2.145 sum -23.149 -13.748 -9.996 28.720 Atomic orbital electron populations 1.22193 0.72116 1.05907 1.04585 1.48851 1.07978 1.03408 1.56106 1.22856 0.90440 0.94683 0.99719 1.20833 0.95807 0.94433 1.18372 1.19896 0.82866 0.94976 0.88096 0.87587 1.86597 1.59139 1.36547 1.55071 1.22619 0.94434 0.94071 0.97882 1.60427 1.12987 1.51465 1.06741 1.21853 0.95684 0.96724 0.90604 1.20346 0.93951 0.95424 0.95155 1.21695 0.98145 0.99912 0.98427 1.21512 0.98968 0.95587 1.00544 1.19613 0.94836 0.95218 0.94531 1.21439 1.14048 1.23252 0.95270 0.93749 1.25937 0.94960 0.95930 1.02801 1.70070 1.23384 1.37258 1.29025 0.85789 0.80093 0.78488 0.79024 1.19627 1.21500 1.17285 1.24006 0.95583 0.94987 0.98992 1.77296 1.02482 1.09942 1.26141 0.89596 0.89314 0.86754 0.77818 0.76861 0.90646 0.94915 0.83273 0.91781 0.95696 0.91547 0.94602 0.93733 0.94307 0.95436 0.91446 0.96867 0.97090 0.92930 0.78609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.66 11.47 127.77 1.47 2.13 16 2 N -0.38 -6.07 4.01 -369.55 -1.48 -7.56 16 3 C 0.07 1.02 11.40 83.54 0.95 1.97 16 4 C -0.28 -4.80 5.12 -20.14 -0.10 -4.91 16 5 C 0.20 3.56 3.66 29.85 0.11 3.67 16 6 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 7 O -0.57 -10.57 12.78 -148.98 -1.90 -12.47 16 8 C 0.04 0.78 5.34 86.30 0.46 1.24 16 9 N -0.68 -16.95 5.71 -513.87 -2.94 -19.89 16 10 C 0.08 2.43 4.65 86.30 0.40 2.83 16 11 C -0.05 -1.82 0.60 -52.18 -0.03 -1.85 16 12 C -0.12 -4.52 7.89 71.98 0.57 -3.96 16 13 C -0.11 -4.13 8.06 71.98 0.58 -3.55 16 14 C 0.00 -0.19 3.11 29.85 0.09 -0.10 16 15 C -0.50 -28.40 8.20 25.60 0.21 -28.19 16 16 H 0.04 2.75 5.92 -2.91 -0.02 2.74 16 17 C 0.00 -0.05 5.47 84.65 0.46 0.42 16 18 N -0.96 -60.50 13.96 21.45 0.30 -60.20 16 19 Si 0.94 44.97 27.47 68.60 1.88 46.85 16 20 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 22 H -0.25 -11.09 6.54 99.48 0.65 -10.44 16 23 C 0.05 0.90 11.44 85.24 0.97 1.88 16 24 N -0.34 -7.11 12.58 -57.02 -0.72 -7.83 16 25 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 26 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 28 H 0.21 1.55 8.06 -2.91 -0.02 1.53 16 29 H 0.38 4.69 8.35 -74.06 -0.62 4.07 16 30 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.35 8.60 6.33 -89.70 -0.57 8.03 16 33 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.07 2.02 6.57 -2.39 -0.02 2.00 16 36 H 0.03 1.52 6.62 -2.39 -0.02 1.51 16 37 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.04 1.43 8.14 -2.38 -0.02 1.42 16 39 H 0.03 1.19 6.62 -2.39 -0.02 1.18 16 40 H 0.07 2.25 7.60 -2.39 -0.02 2.23 16 41 H 0.01 0.61 7.20 -2.38 -0.02 0.59 16 42 H 0.01 0.50 7.57 -2.39 -0.02 0.48 16 43 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 44 H 0.20 2.50 7.75 -2.91 -0.02 2.48 16 Total: -1.00 -73.21 351.98 1.04 -72.17 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -0.25 Total: 17.34 kcal Atomic # 6 Polarization: -34.55 SS G_CDS: 6.14 Total: -28.41 kcal Atomic # 7 Polarization: -90.64 SS G_CDS: -4.84 Total: -95.47 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: -1.90 Total: -12.47 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.88 Total: 46.85 kcal Total: -73.21 1.04 -72.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742376437.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.514 kcal (2) G-P(sol) polarization free energy of solvation -73.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds