Wall clock time and date at job start Tue Mar 31 2020 05:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34946 * 126.04181 * 2 1 4 4 C 1.35318 * 107.74997 * 180.14821 * 3 2 1 5 5 C 1.50698 * 126.04139 * 179.86907 * 4 3 2 6 6 H 1.08998 * 109.46910 * 24.72051 * 5 4 3 7 7 O 1.42906 * 109.46873 * 144.71486 * 5 4 3 8 8 C 1.52993 * 109.47393 * 264.71664 * 5 4 3 9 9 N 1.46905 * 109.47039 * 180.02562 * 8 5 4 10 10 C 1.46901 * 110.99870 * 180.02562 * 9 8 5 11 11 C 1.53004 * 109.46916 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.46923 * 299.99733 * 11 10 9 13 13 C 1.52999 * 109.46998 * 59.99872 * 11 10 9 14 14 C 1.52996 * 109.46700 * 179.97438 * 11 10 9 15 15 C 1.50701 * 109.46820 * 179.97438 * 14 11 10 16 16 H 1.08000 * 120.00070 * 0.02562 * 15 14 11 17 17 C 1.37878 * 120.00019 * 179.97438 * 15 14 11 18 18 N 1.31515 * 120.00228 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 120.00068 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46757 * 60.00769 * 19 17 15 21 21 H 1.48495 * 109.46824 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47105 * 300.00477 * 19 17 15 23 23 C 1.39880 * 107.91780 * 359.61222 * 4 3 2 24 24 N 1.30839 * 108.19661 * 0.23859 * 23 4 3 25 25 H 1.09003 * 109.47151 * 270.26338 * 1 2 3 26 26 H 1.09003 * 109.47197 * 30.25691 * 1 2 3 27 27 H 1.08993 * 109.47610 * 150.26216 * 1 2 3 28 28 H 1.07998 * 126.12426 * 359.97438 * 3 2 1 29 29 H 0.96709 * 113.99630 * 60.00135 * 7 5 4 30 30 H 1.09001 * 109.47393 * 60.00436 * 8 5 4 31 31 H 1.08998 * 109.47408 * 300.00082 * 8 5 4 32 32 H 1.00901 * 110.99869 * 56.04956 * 9 8 5 33 33 H 1.09004 * 109.47031 * 299.99620 * 10 9 8 34 34 H 1.08995 * 109.47111 * 59.99900 * 10 9 8 35 35 H 1.09002 * 109.47301 * 60.00027 * 12 11 10 36 36 H 1.09001 * 109.47017 * 180.02562 * 12 11 10 37 37 H 1.09005 * 109.47249 * 300.00302 * 12 11 10 38 38 H 1.09001 * 109.46999 * 60.00126 * 13 11 10 39 39 H 1.09001 * 109.46478 * 179.97438 * 13 11 10 40 40 H 1.08993 * 109.47197 * 299.99817 * 13 11 10 41 41 H 1.08993 * 109.47740 * 299.99810 * 14 11 10 42 42 H 1.09005 * 109.47573 * 59.99976 * 14 11 10 43 43 H 0.97002 * 120.00555 * 179.97438 * 18 17 15 44 44 H 1.07989 * 125.89791 * 180.26129 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0033 5 6 4.7680 1.5451 -0.0073 6 1 4.5201 2.5156 0.4225 7 8 5.7984 0.9298 0.7685 8 6 5.2558 1.7337 -1.4451 9 7 6.4496 2.5898 -1.4489 10 6 6.9468 2.7938 -2.8161 11 6 8.1881 3.6876 -2.7792 12 6 7.8249 5.0394 -2.1617 13 6 9.2745 3.0170 -1.9361 14 6 8.7062 3.8995 -4.2031 15 6 9.9285 4.7804 -4.1669 16 1 10.2988 5.1515 -3.2228 17 6 10.5745 5.1116 -5.3391 18 7 10.1238 4.6592 -6.4889 19 14 12.0899 6.2029 -5.2942 20 1 13.1441 5.5525 -4.4751 21 1 12.5928 6.4087 -6.6762 22 1 11.7372 7.5154 -4.6957 23 6 3.5346 -0.7323 0.0036 24 7 2.2890 -1.1328 0.0056 25 1 -0.3633 0.0047 1.0277 26 1 -0.3634 0.8877 -0.5178 27 1 -0.3634 -0.8922 -0.5097 28 1 1.9282 2.1192 -0.0004 29 1 6.0699 0.0606 0.4429 30 1 4.4699 2.2031 -2.0369 31 1 5.5037 0.7632 -1.8749 32 1 7.1703 2.2078 -0.8549 33 1 7.2060 1.8307 -3.2559 34 1 6.1726 3.2710 -3.4168 35 1 7.4559 4.8881 -1.1472 36 1 8.7091 5.6764 -2.1358 37 1 7.0508 5.5171 -2.7623 38 1 9.5333 2.0539 -2.3762 39 1 10.1589 3.6536 -1.9103 40 1 8.9056 2.8657 -0.9218 41 1 8.9651 2.9363 -4.6428 42 1 7.9323 4.3770 -4.8042 43 1 10.5780 4.8925 -7.3136 44 1 4.4053 -1.3712 0.0070 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000742376438.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:35 Heat of formation + Delta-G solvation = 13.037964 kcal Electronic energy + Delta-G solvation = -21917.269065 eV Core-core repulsion = 18677.885886 eV Total energy + Delta-G solvation = -3239.383179 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.52277 -38.14944 -36.92402 -33.86902 -33.46904 -32.14896 -31.07655 -28.35256 -27.01982 -26.45775 -26.25771 -24.69330 -22.80528 -21.82209 -21.37333 -20.49115 -17.88273 -17.69052 -16.32536 -16.10045 -15.71124 -15.66686 -14.90488 -14.73450 -14.64494 -14.13308 -13.90214 -13.32890 -13.18953 -13.09719 -12.86981 -12.76517 -12.39070 -12.04861 -11.94626 -11.70178 -11.50072 -10.94582 -10.83715 -10.81461 -10.74490 -10.44153 -10.34918 -10.17629 -10.03669 -9.71671 -9.62752 -8.98438 -8.82162 -8.61879 -8.28170 -8.01632 -5.92899 -3.92837 1.58853 2.21643 2.48370 3.37291 3.41637 3.44134 4.12570 4.31019 4.49488 4.53782 4.61770 4.74695 4.82478 5.00464 5.10012 5.14051 5.21413 5.42700 5.43554 5.60226 5.72084 5.82892 5.84395 6.05475 6.09982 6.30662 6.34292 6.40120 6.57802 6.67665 6.72975 6.84991 6.88955 7.26689 7.27877 7.31924 7.37449 7.45238 7.56233 7.73508 7.79955 7.90498 8.07653 8.52385 9.12455 9.69714 11.18782 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.040087 B = 0.002728 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.321260 B =10261.890191 C =10481.284404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.377 5.377 3 C 0.067 3.933 4 C -0.266 4.266 5 C 0.189 3.811 6 H 0.109 0.891 7 O -0.552 6.552 8 C 0.034 3.966 9 N -0.683 5.683 10 C 0.070 3.930 11 C -0.058 4.058 12 C -0.116 4.116 13 C -0.129 4.129 14 C 0.033 3.967 15 C -0.506 4.506 16 H 0.059 0.941 17 C 0.054 3.946 18 N -0.899 5.899 19 Si 0.888 3.112 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.277 1.277 23 C 0.058 3.942 24 N -0.298 5.298 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.176 0.824 29 H 0.369 0.631 30 H 0.075 0.925 31 H 0.026 0.974 32 H 0.345 0.655 33 H 0.021 0.979 34 H 0.064 0.936 35 H 0.043 0.957 36 H 0.054 0.946 37 H 0.038 0.962 38 H 0.039 0.961 39 H 0.063 0.937 40 H 0.035 0.965 41 H 0.012 0.988 42 H 0.014 0.986 43 H 0.259 0.741 44 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.623 -8.879 13.503 23.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.160 5.160 3 C -0.080 4.080 4 C -0.278 4.278 5 C 0.129 3.871 6 H 0.127 0.873 7 O -0.356 6.356 8 C -0.096 4.096 9 N -0.316 5.316 10 C -0.058 4.058 11 C -0.058 4.058 12 C -0.173 4.173 13 C -0.187 4.187 14 C -0.004 4.004 15 C -0.544 4.544 16 H 0.077 0.923 17 C -0.146 4.146 18 N -0.539 5.539 19 Si 0.716 3.284 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.203 1.203 23 C -0.128 4.128 24 N -0.119 5.119 25 H 0.093 0.907 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.193 0.807 29 H 0.216 0.784 30 H 0.094 0.906 31 H 0.045 0.955 32 H 0.165 0.835 33 H 0.039 0.961 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.082 0.918 40 H 0.054 0.946 41 H 0.030 0.970 42 H 0.033 0.967 43 H 0.069 0.931 44 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -18.973 -8.748 13.666 24.965 hybrid contribution 1.644 -0.101 -0.830 1.845 sum -17.329 -8.849 12.836 23.310 Atomic orbital electron populations 1.21866 0.74170 1.04596 1.03381 1.48501 1.06690 1.03842 1.56929 1.22325 0.90636 0.93544 1.01450 1.20857 0.95525 0.94635 1.16820 1.20118 0.82219 0.94091 0.90697 0.87277 1.86630 1.56142 1.36700 1.56169 1.22598 0.95074 0.95611 0.96338 1.60486 1.08614 1.50596 1.11951 1.22104 0.97629 0.98025 0.88057 1.20616 0.92048 0.94148 0.98999 1.21598 1.00459 0.96486 0.98784 1.21772 0.99590 1.00064 0.97256 1.19125 0.95739 0.96629 0.88926 1.21211 1.10986 1.29671 0.92556 0.92321 1.25020 0.97492 0.96402 0.95723 1.69957 1.40628 1.45661 0.97628 0.86723 0.83573 0.81249 0.76840 1.20349 1.21490 1.20316 1.23641 0.95273 0.94395 0.99523 1.77353 1.01650 1.08283 1.24608 0.90741 0.89347 0.89291 0.80667 0.78396 0.90620 0.95543 0.83496 0.96063 0.91788 0.93776 0.92744 0.94282 0.94192 0.91778 0.94560 0.96964 0.96746 0.93147 0.80206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.50 11.47 59.84 0.69 1.19 16 2 N -0.38 -3.49 4.01 -68.17 -0.27 -3.76 16 3 C 0.07 0.59 11.40 -17.22 -0.20 0.39 16 4 C -0.27 -2.65 5.15 -105.05 -0.54 -3.19 16 5 C 0.19 1.97 3.69 -27.89 -0.10 1.87 16 6 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 7 O -0.55 -5.98 12.56 -35.23 -0.44 -6.42 16 8 C 0.03 0.40 5.37 -3.82 -0.02 0.38 16 9 N -0.68 -9.88 5.71 -113.78 -0.65 -10.53 16 10 C 0.07 1.23 4.65 -3.82 -0.02 1.21 16 11 C -0.06 -1.16 0.60 -154.51 -0.09 -1.25 16 12 C -0.12 -2.28 8.06 37.16 0.30 -1.98 16 13 C -0.13 -2.45 7.89 37.16 0.29 -2.15 16 14 C 0.03 0.85 4.04 -27.88 -0.11 0.73 16 15 C -0.51 -13.94 7.65 -34.44 -0.26 -14.21 16 16 H 0.06 1.57 5.68 -52.49 -0.30 1.27 16 17 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 18 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 19 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C 0.06 0.59 11.40 -17.36 -0.20 0.40 16 24 N -0.30 -3.43 12.57 30.62 0.39 -3.04 16 25 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.18 1.01 8.06 -52.49 -0.42 0.59 16 29 H 0.37 2.83 8.24 45.56 0.38 3.21 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.34 4.97 6.16 -39.29 -0.24 4.72 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.04 0.78 7.60 -51.93 -0.39 0.39 16 36 H 0.05 1.14 6.62 -51.93 -0.34 0.79 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 40 H 0.04 0.59 6.57 -51.93 -0.34 0.25 16 41 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.18 1.36 7.64 -52.49 -0.40 0.96 16 LS Contribution 355.05 15.07 5.35 5.35 Total: -1.00 -33.25 355.05 -6.90 -40.14 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -6.62 Total: 3.04 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -0.36 Total: -15.16 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: 0.20 Total: -43.67 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -0.44 Total: -6.42 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.25 -6.90 -40.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742376438.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.183 kcal (2) G-P(sol) polarization free energy of solvation -33.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds