Wall clock time and date at job start Tue Mar 31 2020 05:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 112.78329 * 2 1 4 4 C 1.53500 * 113.47057 * 229.21230 * 2 1 3 5 5 C 1.53503 * 83.34337 * 271.29256 * 4 2 1 6 6 N 1.47066 * 87.98359 * 333.92760 * 5 4 2 7 7 C 1.34775 * 136.05645 * 207.14869 * 6 5 4 8 8 O 1.21592 * 120.00095 * 180.02562 * 7 6 5 9 9 N 1.34773 * 120.00193 * 0.02562 * 7 6 5 10 10 C 1.46502 * 120.00030 * 179.97438 * 9 7 6 11 11 C 1.53035 * 109.46188 * 275.02423 * 10 9 7 12 12 C 1.53189 * 109.31258 * 178.60129 * 11 10 9 13 13 N 1.46927 * 108.76601 * 54.66046 * 12 11 10 14 14 C 1.36938 * 120.63202 * 126.36248 * 13 12 11 15 15 H 1.07994 * 119.99906 * 331.85787 * 14 13 12 16 16 C 1.38813 * 119.99921 * 151.86026 * 14 13 12 17 17 N 1.31624 * 119.99800 * 343.06902 * 16 14 13 18 18 Si 1.86800 * 119.99954 * 163.07021 * 16 14 13 19 19 H 1.48497 * 109.47153 * 59.99995 * 18 16 14 20 20 H 1.48504 * 109.46807 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47122 * 299.99839 * 18 16 14 22 22 C 1.46930 * 118.73594 * 306.38046 * 13 12 11 23 23 C 1.53043 * 109.45777 * 154.97211 * 10 9 7 24 24 H 1.09001 * 109.47449 * 308.72668 * 1 2 3 25 25 H 1.09002 * 109.46916 * 68.72590 * 1 2 3 26 26 H 1.08999 * 109.47577 * 188.72450 * 1 2 3 27 27 H 1.09000 * 109.47294 * 171.27746 * 3 2 1 28 28 H 1.09009 * 109.46843 * 291.27374 * 3 2 1 29 29 H 1.08998 * 109.47618 * 51.27254 * 3 2 1 30 30 H 1.08993 * 114.20713 * 157.70167 * 4 2 1 31 31 H 1.09003 * 114.20402 * 24.87610 * 4 2 1 32 32 H 1.09002 * 113.46484 * 219.15322 * 5 4 2 33 33 H 1.08992 * 113.47151 * 88.71039 * 5 4 2 34 34 H 0.97001 * 120.00255 * 359.97438 * 9 7 6 35 35 H 1.08998 * 109.45882 * 35.00094 * 10 9 7 36 36 H 1.09004 * 109.50337 * 298.57093 * 11 10 9 37 37 H 1.08999 * 109.49913 * 58.66685 * 11 10 9 38 38 H 1.09004 * 109.60139 * 294.87017 * 12 11 10 39 39 H 1.09010 * 109.70349 * 174.51033 * 12 11 10 40 40 H 0.96999 * 119.99483 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.58777 * 293.82209 * 22 13 12 42 42 H 1.09002 * 109.70392 * 173.46523 * 22 13 12 43 43 H 1.09001 * 109.49780 * 301.33912 * 23 10 9 44 44 H 1.09001 * 109.49886 * 61.40350 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1225 1.4106 0.0000 4 6 2.1413 -0.9198 -1.0660 5 6 2.0389 -1.9762 0.0429 6 7 2.1157 -0.8811 1.0216 7 6 2.5375 -0.7449 2.2943 8 8 2.4646 0.3359 2.8466 9 7 3.0403 -1.8066 2.9549 10 6 3.4994 -1.6583 4.3382 11 6 4.9445 -1.1547 4.3446 12 6 5.4094 -0.9676 5.7923 13 7 5.2066 -2.2275 6.5204 14 6 6.2396 -2.8136 7.2019 15 1 7.2577 -2.6588 6.8767 16 6 5.9782 -3.6068 8.3107 17 7 4.8077 -3.5367 8.9087 18 14 7.2874 -4.7736 8.9541 19 1 8.4928 -3.9987 9.3435 20 1 6.7634 -5.5012 10.1379 21 1 7.6469 -5.7479 7.8927 22 6 3.8743 -2.8468 6.5031 23 6 3.4265 -3.0125 5.0475 24 1 -0.3634 0.6429 0.8017 25 1 -0.3633 0.3729 -0.9577 26 1 -0.3634 -1.0157 0.1559 27 1 3.1997 1.3523 0.1558 28 1 1.9193 1.8900 -0.9577 29 1 1.6705 1.9946 0.8017 30 1 3.1630 -0.6627 -1.3455 31 1 1.4920 -1.1056 -1.9216 32 1 2.8938 -2.6515 0.0793 33 1 1.0845 -2.5025 0.0543 34 1 3.0982 -2.6689 2.5145 35 1 2.8628 -0.9418 4.8573 36 1 5.5858 -1.8826 3.8476 37 1 4.9999 -0.2015 3.8189 38 1 4.8277 -0.1754 6.2636 39 1 6.4668 -0.7029 5.8074 40 1 4.6252 -4.0907 9.6837 41 1 3.1674 -2.2078 7.0324 42 1 3.9166 -3.8232 6.9858 43 1 2.4012 -3.3818 5.0220 44 1 4.0817 -3.7230 4.5435 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747579595.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:58 Heat of formation + Delta-G solvation = 25.110604 kcal Electronic energy + Delta-G solvation = -22933.793018 eV Core-core repulsion = 19694.933348 eV Total energy + Delta-G solvation = -3238.859670 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.87856 -38.75261 -37.00878 -34.28527 -32.39124 -31.39726 -30.10387 -29.65951 -28.67970 -27.64861 -24.92829 -23.27064 -22.55468 -22.12303 -21.03961 -19.56577 -18.58927 -17.14041 -16.68740 -16.13087 -15.93088 -14.92799 -14.72829 -14.49884 -14.24755 -13.82054 -13.53453 -13.48863 -13.00200 -12.83975 -12.63770 -12.51134 -12.35447 -12.31317 -11.85619 -11.80397 -11.46721 -11.40866 -11.08031 -10.79996 -10.69450 -10.57166 -10.45203 -10.23401 -10.00046 -9.85488 -9.68733 -9.48933 -8.83730 -8.49778 -8.36239 -6.65429 -5.77166 -3.19227 2.53266 3.39766 3.43707 3.45261 3.46585 3.95866 4.15633 4.51535 4.64857 4.76115 4.79610 4.98353 5.15374 5.26892 5.37147 5.39973 5.43669 5.46006 5.54362 5.58341 5.66258 5.69061 5.73883 5.87644 5.95213 6.05105 6.13181 6.21051 6.33897 6.42104 6.57031 6.64499 6.66129 6.84879 7.03937 7.04397 7.34649 7.40392 7.65147 7.81273 8.24884 8.47202 8.86842 9.23267 9.86590 10.44094 11.31798 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.041145 B = 0.003428 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.350992 B = 8165.986681 C = 8260.369411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.173 3.827 3 C -0.145 4.145 4 C -0.147 4.147 5 C 0.097 3.903 6 N -0.663 5.663 7 C 0.732 3.268 8 O -0.586 6.586 9 N -0.737 5.737 10 C 0.170 3.830 11 C -0.139 4.139 12 C 0.148 3.852 13 N -0.593 5.593 14 C -0.253 4.253 15 H 0.065 0.935 16 C 0.002 3.998 17 N -0.904 5.904 18 Si 0.903 3.097 19 H -0.283 1.283 20 H -0.291 1.291 21 H -0.284 1.284 22 C 0.175 3.825 23 C -0.145 4.145 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.389 0.611 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.020 0.980 39 H 0.055 0.945 40 H 0.254 0.746 41 H 0.021 0.979 42 H 0.091 0.909 43 H 0.053 0.947 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.922 2.652 -21.150 22.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.088 3.912 3 C -0.203 4.203 4 C -0.185 4.185 5 C -0.026 4.026 6 N -0.404 5.404 7 C 0.435 3.565 8 O -0.464 6.464 9 N -0.390 5.390 10 C 0.066 3.934 11 C -0.179 4.179 12 C 0.021 3.979 13 N -0.316 5.316 14 C -0.382 4.382 15 H 0.083 0.917 16 C -0.197 4.197 17 N -0.548 5.548 18 Si 0.733 3.267 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.211 1.211 22 C 0.049 3.951 23 C -0.186 4.186 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.222 0.778 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.038 0.962 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.039 0.961 42 H 0.109 0.891 43 H 0.071 0.929 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.928 3.399 -20.275 22.034 hybrid contribution 0.597 -1.160 0.215 1.322 sum -7.331 2.239 -20.060 21.475 Atomic orbital electron populations 1.21981 0.93452 1.02721 1.02676 1.21757 0.93472 0.92397 0.83600 1.21886 1.01577 0.94883 1.01948 1.23522 1.02423 0.96416 0.96157 1.22854 1.01742 0.92005 0.86014 1.49054 1.66568 1.13830 1.10936 1.15388 0.77965 0.84693 0.78454 1.90909 1.63052 1.26125 1.66291 1.45513 1.67315 1.10716 1.15469 1.20905 0.95260 0.98607 0.78641 1.22387 0.95676 1.00038 0.99819 1.20879 0.98546 0.89087 0.89398 1.44086 1.08159 1.21159 1.58149 1.19159 0.87744 1.25547 1.05776 0.91704 1.25054 0.97074 1.01781 0.95756 1.70022 1.22705 1.40949 1.21123 0.86358 0.81212 0.81158 0.77971 1.20890 1.21645 1.21074 1.20732 0.85541 0.99911 0.88936 1.22542 1.00057 0.94969 1.00983 0.91684 0.91019 0.91994 0.92009 0.91738 0.91556 0.88720 0.89421 0.90768 0.90201 0.77819 0.90164 0.92541 0.92753 0.96170 0.92617 0.93570 0.96106 0.89062 0.92858 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.26 37.16 0.34 -0.91 16 2 C 0.17 1.70 1.59 -136.27 -0.22 1.49 16 3 C -0.15 -1.53 8.73 37.16 0.32 -1.21 16 4 C -0.15 -1.01 7.62 -26.21 -0.20 -1.21 16 5 C 0.10 0.79 7.91 -8.50 -0.07 0.73 16 6 N -0.66 -8.26 3.37 -175.63 -0.59 -8.85 16 7 C 0.73 12.22 8.66 -86.92 -0.75 11.47 16 8 O -0.59 -12.15 16.21 5.28 0.09 -12.06 16 9 N -0.74 -11.60 5.08 -58.64 -0.30 -11.90 16 10 C 0.17 3.16 2.42 -67.89 -0.16 3.00 16 11 C -0.14 -2.69 5.65 -26.62 -0.15 -2.84 16 12 C 0.15 3.31 6.52 -3.71 -0.02 3.28 16 13 N -0.59 -15.18 2.99 -172.31 -0.52 -15.69 16 14 C -0.25 -7.02 9.58 -15.06 -0.14 -7.16 16 15 H 0.07 1.77 7.88 -52.49 -0.41 1.35 16 16 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 17 N -0.90 -26.36 11.19 55.49 0.62 -25.74 16 18 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 22 C 0.18 4.22 5.30 -3.71 -0.02 4.20 16 23 C -0.15 -2.78 5.55 -26.61 -0.15 -2.93 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.49 7.04 -51.93 -0.37 0.12 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.09 0.66 8.12 -51.93 -0.42 0.24 16 31 H 0.09 0.40 8.11 -51.93 -0.42 -0.02 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.54 7.30 -51.93 -0.38 0.17 16 34 H 0.39 5.13 8.32 -40.82 -0.34 4.79 16 35 H 0.08 1.69 7.57 -51.93 -0.39 1.30 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 1.21 7.93 -51.92 -0.41 0.80 16 40 H 0.25 7.17 8.31 -40.82 -0.34 6.84 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 2.42 6.06 -51.93 -0.31 2.11 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 347.82 15.07 5.24 5.24 Total: -1.00 -32.79 347.82 -9.46 -42.25 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -7.67 Total: 2.17 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -1.30 Total: 7.86 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: -0.78 Total: -62.18 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.06 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.79 -9.46 -42.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747579595.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.362 kcal (2) G-P(sol) polarization free energy of solvation -32.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds