Wall clock time and date at job start Tue Mar 31 2020 05:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47602 * 2 1 4 4 C 1.50707 * 109.46671 * 119.99937 * 2 1 3 5 5 N 1.28004 * 119.99868 * 359.97438 * 4 2 1 6 6 N 1.40107 * 120.00082 * 180.02562 * 5 4 2 7 7 C 1.34774 * 120.00170 * 180.02562 * 6 5 4 8 8 O 1.21595 * 119.99807 * 179.97438 * 7 6 5 9 9 N 1.34773 * 119.99940 * 0.02562 * 7 6 5 10 10 C 1.46506 * 119.99969 * 180.02562 * 9 7 6 11 11 C 1.54268 * 110.02813 * 272.63206 * 10 9 7 12 12 C 1.54971 * 104.15564 * 217.13629 * 11 10 9 13 13 C 1.54883 * 102.77798 * 37.88503 * 12 11 10 14 14 C 1.53871 * 110.03427 * 155.40981 * 10 9 7 15 15 C 1.53001 * 109.47343 * 239.99373 * 2 1 3 16 16 C 1.50698 * 109.46872 * 60.00808 * 15 2 1 17 17 H 1.08001 * 119.99877 * 359.97438 * 16 15 2 18 18 C 1.37873 * 119.99877 * 180.02562 * 16 15 2 19 19 N 1.31515 * 120.00398 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99992 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47411 * 89.99795 * 20 18 16 22 22 H 1.48500 * 109.47118 * 209.99641 * 20 18 16 23 23 H 1.48498 * 109.47123 * 329.99483 * 20 18 16 24 24 H 1.08995 * 109.47540 * 300.00601 * 1 2 3 25 25 H 1.09003 * 109.46632 * 60.00322 * 1 2 3 26 26 H 1.09001 * 109.47318 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47749 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.46635 * 299.99949 * 3 2 1 29 29 H 1.09009 * 109.47036 * 59.99122 * 3 2 1 30 30 H 1.07995 * 120.00017 * 180.02562 * 4 2 1 31 31 H 0.97000 * 119.99293 * 0.02562 * 6 5 4 32 32 H 0.97005 * 120.00161 * 359.72198 * 9 7 6 33 33 H 1.08996 * 110.01294 * 34.01804 * 10 9 7 34 34 H 1.09004 * 110.48773 * 335.77712 * 11 10 9 35 35 H 1.08996 * 110.48996 * 98.42933 * 11 10 9 36 36 H 1.09002 * 110.71525 * 279.57326 * 12 11 10 37 37 H 1.08996 * 110.92520 * 156.29778 * 12 11 10 38 38 H 1.09002 * 110.48973 * 203.40432 * 13 12 11 39 39 H 1.08998 * 110.59905 * 80.81890 * 13 12 11 40 40 H 1.08993 * 110.03486 * 238.56624 * 14 10 9 41 41 H 1.09000 * 110.02921 * 0.02562 * 14 10 9 42 42 H 1.09001 * 109.46894 * 180.02562 * 15 2 1 43 43 H 1.09001 * 109.47429 * 300.00563 * 15 2 1 44 44 H 0.96998 * 120.00304 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7104 1.2306 5 7 1.2003 -1.1964 2.0733 6 7 1.6672 -1.8564 3.2176 7 6 0.7913 -2.3686 4.1047 8 8 1.1965 -2.9418 5.0975 9 7 -0.5337 -2.2463 3.8908 10 6 -1.4859 -2.8025 4.8554 11 6 -1.7778 -4.2793 4.5181 12 6 -3.2842 -4.4507 4.8388 13 6 -3.8895 -3.1041 4.3706 14 6 -2.8278 -2.0555 4.7621 15 6 2.0400 -0.7214 -1.2491 16 6 1.5379 -0.0110 -2.4797 17 1 0.9167 0.8670 -2.3806 18 6 1.8706 -0.4824 -3.7318 19 7 2.6266 -1.5518 -3.8525 20 14 1.2475 0.3978 -5.2571 21 1 2.2255 1.4393 -5.6619 22 1 1.0822 -0.5817 -6.3610 23 1 -0.0606 1.0353 -4.9611 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9562 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.0940 -0.8088 1.4017 31 1 2.6209 -1.9447 3.3713 32 1 -0.8570 -1.7861 3.1004 33 1 -1.0835 -2.7227 5.8652 34 1 -1.5881 -4.4743 3.4625 35 1 -1.1764 -4.9395 5.1431 36 1 -3.4370 -4.5916 5.9089 37 1 -3.7098 -5.2818 4.2766 38 1 -4.8286 -2.9076 4.8878 39 1 -4.0428 -3.1072 3.2915 40 1 -3.0772 -1.6140 5.7269 41 1 -2.7708 -1.2795 3.9989 42 1 3.1300 -0.7217 -1.2488 43 1 1.6767 -1.7490 -1.2491 44 1 2.8609 -1.8832 -4.7334 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755674437.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:40 Heat of formation + Delta-G solvation = -20.385106 kcal Electronic energy + Delta-G solvation = -22145.677156 eV Core-core repulsion = 18904.844644 eV Total energy + Delta-G solvation = -3240.832512 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.07507 -38.15655 -37.52475 -35.38518 -33.46623 -32.50656 -30.65271 -28.88567 -27.44199 -27.08593 -26.49515 -24.17305 -22.17180 -21.28524 -20.81368 -20.20147 -18.39173 -18.03222 -16.86401 -16.28810 -15.97074 -15.48299 -15.20910 -14.75958 -14.56957 -13.92327 -13.68798 -13.51948 -13.37002 -12.94436 -12.33109 -12.12495 -11.96079 -11.63747 -11.41503 -11.33594 -11.22630 -11.09158 -11.03158 -10.91360 -10.86774 -10.80085 -10.68557 -10.37432 -10.29584 -10.12059 -9.78198 -9.49588 -9.04974 -9.03327 -8.42955 -8.39918 -6.05924 -4.07600 2.25875 2.66934 3.28424 3.35930 3.37572 3.40535 3.66544 4.38691 4.41451 4.48621 4.73480 5.14580 5.22571 5.30147 5.30701 5.35132 5.40181 5.47093 5.50062 5.64732 5.73278 5.79449 5.85895 5.87224 5.97762 6.07241 6.11158 6.17582 6.28512 6.40463 6.57116 6.65638 6.66345 6.90174 6.98543 6.99215 7.09759 7.51412 7.54802 7.67286 7.91915 8.29246 8.33332 8.76578 8.96748 9.56138 11.05513 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020309 B = 0.003455 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.368834 B = 8102.678555 C = 8693.502196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.015 4.015 3 C -0.123 4.123 4 C 0.121 3.879 5 N -0.276 5.276 6 N -0.600 5.600 7 C 0.733 3.267 8 O -0.599 6.599 9 N -0.724 5.724 10 C 0.155 3.845 11 C -0.137 4.137 12 C -0.124 4.124 13 C -0.124 4.124 14 C -0.132 4.132 15 C 0.039 3.961 16 C -0.512 4.512 17 H 0.062 0.938 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.288 1.288 23 H -0.273 1.273 24 H 0.036 0.964 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.035 0.965 30 H 0.104 0.896 31 H 0.394 0.606 32 H 0.410 0.590 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.020 0.980 43 H 0.019 0.981 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.853 -0.076 14.636 17.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.018 4.018 3 C -0.182 4.182 4 C -0.094 4.094 5 N -0.082 5.082 6 N -0.345 5.345 7 C 0.434 3.566 8 O -0.476 6.476 9 N -0.380 5.380 10 C 0.050 3.950 11 C -0.176 4.176 12 C -0.162 4.162 13 C -0.162 4.162 14 C -0.170 4.170 15 C 0.001 3.999 16 C -0.550 4.550 17 H 0.080 0.920 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.214 1.214 23 H -0.198 1.198 24 H 0.056 0.944 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.054 0.946 30 H 0.121 0.879 31 H 0.234 0.766 32 H 0.247 0.753 33 H 0.106 0.894 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.038 0.962 43 H 0.037 0.963 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.596 -0.829 15.630 18.359 hybrid contribution 1.109 0.503 -1.347 1.816 sum -8.487 -0.325 14.282 16.617 Atomic orbital electron populations 1.21619 0.93965 1.01563 1.00478 1.19837 0.96475 0.94792 0.90701 1.21720 1.00598 0.94634 1.01228 1.26571 0.96519 0.92536 0.93782 1.73956 1.29053 1.09468 0.95706 1.46487 1.08306 1.58823 1.20911 1.15452 0.81463 0.78298 0.81418 1.90949 1.78402 1.49228 1.29017 1.45270 1.03794 1.61349 1.27582 1.21515 0.88009 0.92346 0.93158 1.22847 0.96042 0.96374 1.02308 1.22482 0.95179 0.97427 1.01086 1.22355 0.97804 0.94599 1.01419 1.22440 0.93707 0.98417 1.02446 1.19136 0.96390 0.95349 0.89009 1.21151 1.31406 1.12211 0.90252 0.91963 1.24998 0.95238 0.95013 0.99126 1.69958 1.36915 1.22966 1.23570 0.86626 0.79274 0.79394 0.82913 1.20718 1.21353 1.19811 0.94449 0.91591 0.93095 0.93087 0.90561 0.94592 0.87919 0.76582 0.75337 0.89368 0.90975 0.91177 0.91430 0.91402 0.91511 0.91260 0.90805 0.90763 0.96209 0.96256 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.05 7.45 37.16 0.28 -1.77 16 2 C -0.02 -0.27 0.75 -155.66 -0.12 -0.39 16 3 C -0.12 -2.01 8.20 37.15 0.30 -1.71 16 4 C 0.12 1.93 9.56 -13.87 -0.13 1.80 16 5 N -0.28 -4.32 9.01 32.67 0.29 -4.02 16 6 N -0.60 -9.10 6.26 27.63 0.17 -8.93 16 7 C 0.73 11.80 8.67 -86.92 -0.75 11.05 16 8 O -0.60 -11.19 16.84 5.28 0.09 -11.10 16 9 N -0.72 -9.78 5.01 -57.58 -0.29 -10.07 16 10 C 0.16 1.78 3.24 -66.81 -0.22 1.56 16 11 C -0.14 -1.49 6.54 -25.03 -0.16 -1.66 16 12 C -0.12 -1.04 6.91 -24.70 -0.17 -1.21 16 13 C -0.12 -0.99 6.83 -25.07 -0.17 -1.17 16 14 C -0.13 -1.17 6.57 -25.61 -0.17 -1.34 16 15 C 0.04 0.90 4.02 -27.88 -0.11 0.79 16 16 C -0.51 -12.92 7.65 -34.44 -0.26 -13.18 16 17 H 0.06 1.50 5.68 -52.49 -0.30 1.21 16 18 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 19 N -0.89 -25.49 13.29 55.43 0.74 -24.76 16 20 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 24 H 0.04 0.57 8.06 -51.93 -0.42 0.15 16 25 H 0.07 1.20 6.62 -51.93 -0.34 0.86 16 26 H 0.05 0.91 8.06 -51.93 -0.42 0.49 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.08 1.33 6.62 -51.93 -0.34 0.98 16 29 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 30 H 0.10 1.47 8.00 -52.49 -0.42 1.05 16 31 H 0.39 5.42 8.73 -182.59 -1.59 3.83 16 32 H 0.41 5.39 7.35 -40.82 -0.30 5.09 16 33 H 0.09 1.11 7.58 -51.93 -0.39 0.72 16 34 H 0.07 0.87 8.05 -51.93 -0.42 0.45 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.67 7.61 -51.93 -0.40 0.27 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 LS Contribution 355.19 15.07 5.35 5.35 Total: -1.00 -29.37 355.19 -9.15 -38.52 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -8.71 Total: 5.35 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -1.78 Total: -5.79 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: 0.92 Total: -47.78 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.09 Total: -11.10 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.37 -9.15 -38.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755674437.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.139 kcal (2) G-P(sol) polarization free energy of solvation -29.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds