Wall clock time and date at job start Tue Mar 31 2020 05:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29945 * 126.28262 * 2 1 4 4 O 1.21295 * 110.25303 * 179.97438 * 3 2 1 5 5 C 1.33646 * 109.80835 * 359.97438 * 4 3 2 6 6 C 1.50697 * 126.55136 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47134 * 269.97856 * 6 5 4 8 8 C 1.53004 * 109.47042 * 180.02562 * 7 6 5 9 9 N 1.46903 * 109.46941 * 186.11225 * 8 7 6 10 10 C 1.46907 * 110.99704 * 173.67833 * 9 8 7 11 11 C 1.50707 * 109.46857 * 195.30207 * 10 9 8 12 12 H 1.08000 * 119.99800 * 5.00627 * 11 10 9 13 13 C 1.37873 * 119.99819 * 185.01713 * 11 10 9 14 14 N 1.31511 * 120.00194 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00155 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.46846 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47432 * 119.99505 * 15 13 11 18 18 H 1.48495 * 109.47182 * 239.99883 * 15 13 11 19 19 C 1.46891 * 111.00041 * 297.63058 * 9 8 7 20 20 C 1.53002 * 109.47061 * 87.99321 * 19 9 8 21 21 C 1.52999 * 109.47434 * 65.82797 * 20 19 9 22 22 C 1.53002 * 109.47414 * 185.83207 * 20 19 9 23 23 N 1.31130 * 106.89728 * 359.76798 * 5 4 3 24 24 H 1.09003 * 109.47003 * 90.03115 * 1 2 3 25 25 H 1.09005 * 109.46592 * 210.01884 * 1 2 3 26 26 H 1.08994 * 109.47564 * 330.02696 * 1 2 3 27 27 H 1.09001 * 109.47341 * 29.97765 * 6 5 4 28 28 H 1.09001 * 109.47536 * 149.97555 * 6 5 4 29 29 H 1.08997 * 109.47576 * 299.99867 * 7 6 5 30 30 H 1.08999 * 109.47185 * 60.00017 * 7 6 5 31 31 H 1.09001 * 109.46822 * 306.10940 * 8 7 6 32 32 H 1.08994 * 109.47191 * 66.11068 * 8 7 6 33 33 H 1.09003 * 109.47062 * 315.29763 * 10 9 8 34 34 H 1.08996 * 109.47054 * 75.30279 * 10 9 8 35 35 H 0.96999 * 120.00192 * 180.02562 * 14 13 11 36 36 H 1.09000 * 109.47296 * 207.98773 * 19 9 8 37 37 H 1.08997 * 109.47682 * 327.99092 * 19 9 8 38 38 H 1.08996 * 109.47181 * 305.82678 * 20 19 9 39 39 H 1.09001 * 109.46849 * 64.95881 * 21 20 19 40 40 H 1.08998 * 109.47413 * 184.96366 * 21 20 19 41 41 H 1.08998 * 109.47315 * 304.96671 * 21 20 19 42 42 H 1.09001 * 109.47487 * 59.99385 * 22 20 19 43 43 H 1.08994 * 109.47668 * 180.02562 * 22 20 19 44 44 H 1.09010 * 109.46773 * 300.00000 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4418 0.7126 0.0005 5 6 3.5299 -0.6210 0.0015 6 6 4.7970 -1.4367 0.0018 7 6 5.2252 -1.7143 -1.4406 8 6 6.5114 -2.5431 -1.4403 9 7 7.0024 -2.6856 -2.8174 10 6 8.3140 -3.3468 -2.8429 11 6 8.9523 -3.1447 -4.1930 12 1 8.4733 -2.5147 -4.9279 13 6 10.1476 -3.7643 -4.4901 14 7 10.7310 -4.5312 -3.5951 15 14 10.9385 -3.5144 -6.1639 16 1 10.0884 -2.6140 -6.9836 17 1 12.2818 -2.9055 -5.9907 18 1 11.0737 -4.8253 -6.8481 19 6 6.0321 -3.4087 -3.6501 20 6 5.0366 -2.4152 -4.2525 21 6 5.7670 -1.4882 -5.2262 22 6 3.9420 -3.1796 -4.9999 23 7 2.3031 -1.0840 0.0066 24 1 -0.3633 -0.0006 -1.0277 25 1 -0.3633 -0.8899 0.5142 26 1 -0.3634 0.8901 0.5134 27 1 5.5845 -0.8846 0.5147 28 1 4.6211 -2.3812 0.5167 29 1 4.4379 -2.2665 -1.9536 30 1 5.4013 -0.7698 -1.9555 31 1 7.2667 -2.0414 -0.8353 32 1 6.3080 -3.5293 -1.0231 33 1 8.9526 -2.9170 -2.0711 34 1 8.1869 -4.4133 -2.6570 35 1 11.5722 -4.9668 -3.8040 36 1 6.5571 -3.9281 -4.4518 37 1 5.4963 -4.1335 -3.0373 38 1 4.5867 -1.8232 -3.4555 39 1 6.1415 -2.0690 -6.0691 40 1 5.0776 -0.7255 -5.5882 41 1 6.6024 -1.0097 -4.7150 42 1 3.4217 -3.8400 -4.3062 43 1 3.2331 -2.4718 -5.4294 44 1 4.3919 -3.7716 -5.7970 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763559327.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:13 Heat of formation + Delta-G solvation = 52.281073 kcal Electronic energy + Delta-G solvation = -22460.370140 eV Core-core repulsion = 19222.688670 eV Total energy + Delta-G solvation = -3237.681470 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.65930 -38.07381 -36.21131 -34.96294 -33.93251 -32.63295 -31.49828 -29.35458 -27.61529 -26.60980 -26.30305 -24.66634 -23.57953 -22.00171 -21.20404 -20.31096 -19.36866 -18.15993 -17.44646 -16.30751 -15.62479 -15.36312 -14.78253 -14.41330 -14.12215 -13.96452 -13.81797 -13.63454 -13.36461 -13.01293 -12.73508 -12.48350 -12.35387 -12.22189 -11.83619 -11.70202 -11.58776 -11.41362 -11.17383 -11.09934 -10.97793 -10.86992 -10.64152 -10.52180 -10.30980 -10.08150 -9.94679 -9.71429 -9.61432 -9.18325 -8.43095 -7.24330 -6.01887 -4.02566 1.05417 2.10777 2.73461 3.31004 3.38980 3.43704 3.52239 3.91769 4.42015 4.70023 4.80042 4.94082 5.11324 5.17391 5.18115 5.27320 5.33391 5.41776 5.49947 5.55396 5.63085 5.64582 5.75186 5.86031 5.90532 5.97816 6.01132 6.12460 6.22610 6.31724 6.35526 6.42504 6.50419 6.60387 6.65246 6.95569 7.06417 7.27517 7.36354 7.85866 8.07421 8.11521 8.20206 8.56105 9.07327 9.61995 11.08699 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025895 B = 0.003591 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.031091 B = 7796.457671 C = 8311.519214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.164 3.836 3 N -0.391 5.391 4 O 0.075 5.925 5 C 0.198 3.802 6 C -0.031 4.031 7 C -0.118 4.118 8 C 0.059 3.941 9 N -0.534 5.534 10 C 0.193 3.807 11 C -0.502 4.502 12 H 0.067 0.933 13 C 0.054 3.946 14 N -0.900 5.900 15 Si 0.894 3.106 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.286 1.286 19 C 0.066 3.934 20 C -0.102 4.102 21 C -0.134 4.134 22 C -0.146 4.146 23 N -0.487 5.487 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.104 0.896 28 H 0.109 0.891 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.025 0.975 33 H 0.026 0.974 34 H -0.005 1.005 35 H 0.260 0.740 36 H 0.080 0.920 37 H 0.021 0.979 38 H 0.074 0.926 39 H 0.047 0.953 40 H 0.032 0.968 41 H 0.074 0.926 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.665 6.015 6.369 18.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.108 4.108 3 N -0.101 5.101 4 O 0.018 5.982 5 C -0.022 4.022 6 C -0.071 4.071 7 C -0.157 4.157 8 C -0.070 4.070 9 N -0.258 5.258 10 C 0.068 3.932 11 C -0.540 4.540 12 H 0.085 0.915 13 C -0.147 4.147 14 N -0.540 5.540 15 Si 0.722 3.278 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.212 1.212 19 C -0.062 4.062 20 C -0.121 4.121 21 C -0.192 4.192 22 C -0.204 4.204 23 N -0.221 5.221 24 H 0.106 0.894 25 H 0.109 0.891 26 H 0.103 0.897 27 H 0.122 0.878 28 H 0.127 0.873 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.012 0.988 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.039 0.961 38 H 0.092 0.908 39 H 0.066 0.934 40 H 0.051 0.949 41 H 0.093 0.907 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.069 6.880 6.208 19.422 hybrid contribution 0.593 -0.847 -0.539 1.166 sum -16.475 6.033 5.669 18.438 Atomic orbital electron populations 1.20114 0.83149 1.04452 1.04254 1.25898 1.00554 0.83727 1.00651 1.74622 0.89503 1.24039 1.21949 1.85295 1.22205 1.24996 1.65693 1.28976 0.97131 0.81989 0.94133 1.20411 0.87554 0.97924 1.01210 1.21973 0.98960 1.02302 0.92454 1.22033 0.94927 0.97403 0.92627 1.62031 1.04244 1.52563 1.06918 1.19747 0.83556 0.91966 0.97920 1.21241 1.05336 1.28117 0.99340 0.91492 1.24986 0.97278 0.95321 0.97112 1.69964 1.18047 1.31781 1.34211 0.86502 0.79280 0.77807 0.84220 1.19609 1.21098 1.21229 1.22066 0.93091 0.93720 0.97354 1.21470 0.95200 0.97288 0.98143 1.21692 1.00255 0.98387 0.98834 1.21835 0.98422 0.99909 1.00244 1.71920 0.99802 1.29297 1.21124 0.89381 0.89128 0.89673 0.87759 0.87301 0.90457 0.90196 0.91022 0.95646 0.95626 0.98759 0.93069 0.90168 0.96111 0.90840 0.93399 0.94891 0.90733 0.93459 0.93467 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.48 10.51 36.01 0.38 -0.10 16 2 C 0.16 2.01 8.22 -156.38 -1.28 0.72 16 3 N -0.39 -5.29 12.16 30.90 0.38 -4.92 16 4 O 0.08 0.99 11.31 18.09 0.20 1.19 16 5 C 0.20 2.40 7.77 -13.06 -0.10 2.29 16 6 C -0.03 -0.32 5.84 -27.88 -0.16 -0.48 16 7 C -0.12 -1.50 3.70 -26.73 -0.10 -1.60 16 8 C 0.06 0.92 4.84 -3.82 -0.02 0.90 16 9 N -0.53 -10.51 3.83 -236.07 -0.90 -11.42 16 10 C 0.19 4.76 4.67 -4.97 -0.02 4.74 16 11 C -0.50 -13.52 8.29 -34.44 -0.29 -13.81 16 12 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 13 C 0.05 1.49 5.46 -17.82 -0.10 1.40 16 14 N -0.90 -26.22 13.29 55.43 0.74 -25.48 16 15 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 16 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 C 0.07 1.22 3.91 -3.83 -0.01 1.20 16 20 C -0.10 -1.60 2.64 -90.62 -0.24 -1.84 16 21 C -0.13 -2.24 9.14 37.16 0.34 -1.90 16 22 C -0.15 -2.01 9.19 37.16 0.34 -1.67 16 23 N -0.49 -6.38 11.55 -9.87 -0.11 -6.50 16 24 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.08 1.04 5.80 -51.93 -0.30 0.73 16 30 H 0.08 1.08 7.82 -51.93 -0.41 0.67 16 31 H 0.07 1.09 7.95 -51.93 -0.41 0.68 16 32 H 0.03 0.40 8.00 -51.93 -0.42 -0.02 16 33 H 0.03 0.67 7.88 -51.93 -0.41 0.26 16 34 H -0.01 -0.15 8.06 -51.93 -0.42 -0.57 16 35 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.08 1.70 7.02 -51.93 -0.36 1.33 16 37 H 0.02 0.36 7.72 -51.93 -0.40 -0.04 16 38 H 0.07 1.10 4.27 -51.93 -0.22 0.88 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 1.39 7.65 -51.93 -0.40 1.00 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 LS Contribution 356.85 15.07 5.38 5.38 Total: -1.00 -30.40 356.85 -8.13 -38.53 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -7.52 Total: -2.97 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -1.27 Total: -10.14 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 0.09 Total: -48.31 kcal Atomic # 8 Polarization: 0.99 SS G_CDS: 0.20 Total: 1.19 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.40 -8.13 -38.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763559327.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.809 kcal (2) G-P(sol) polarization free energy of solvation -30.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds