Wall clock time and date at job start Tue Mar 31 2020 05:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29945 * 126.28262 * 2 1 4 4 O 1.21295 * 110.25303 * 179.97438 * 3 2 1 5 5 C 1.33646 * 109.80835 * 359.97438 * 4 3 2 6 6 C 1.50697 * 126.55136 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47134 * 269.97856 * 6 5 4 8 8 C 1.53004 * 109.47042 * 180.02562 * 7 6 5 9 9 N 1.46903 * 109.46941 * 186.11225 * 8 7 6 10 10 C 1.46907 * 110.99704 * 173.67833 * 9 8 7 11 11 C 1.50707 * 109.46857 * 195.30207 * 10 9 8 12 12 H 1.08000 * 119.99800 * 5.00627 * 11 10 9 13 13 C 1.37873 * 119.99819 * 185.01713 * 11 10 9 14 14 N 1.31511 * 120.00194 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00155 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.46846 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47432 * 119.99505 * 15 13 11 18 18 H 1.48495 * 109.47182 * 239.99883 * 15 13 11 19 19 C 1.46891 * 111.00041 * 297.63058 * 9 8 7 20 20 C 1.53002 * 109.47061 * 87.99321 * 19 9 8 21 21 C 1.52999 * 109.47434 * 65.82797 * 20 19 9 22 22 C 1.53002 * 109.47414 * 185.83207 * 20 19 9 23 23 N 1.31130 * 106.89728 * 359.76798 * 5 4 3 24 24 H 1.09003 * 109.47003 * 90.03115 * 1 2 3 25 25 H 1.09005 * 109.46592 * 210.01884 * 1 2 3 26 26 H 1.08994 * 109.47564 * 330.02696 * 1 2 3 27 27 H 1.09001 * 109.47341 * 29.97765 * 6 5 4 28 28 H 1.09001 * 109.47536 * 149.97555 * 6 5 4 29 29 H 1.08997 * 109.47576 * 299.99867 * 7 6 5 30 30 H 1.08999 * 109.47185 * 60.00017 * 7 6 5 31 31 H 1.09001 * 109.46822 * 306.10940 * 8 7 6 32 32 H 1.08994 * 109.47191 * 66.11068 * 8 7 6 33 33 H 1.09003 * 109.47062 * 315.29763 * 10 9 8 34 34 H 1.08996 * 109.47054 * 75.30279 * 10 9 8 35 35 H 0.96999 * 120.00192 * 180.02562 * 14 13 11 36 36 H 1.09000 * 109.47296 * 207.98773 * 19 9 8 37 37 H 1.08997 * 109.47682 * 327.99092 * 19 9 8 38 38 H 1.08996 * 109.47181 * 305.82678 * 20 19 9 39 39 H 1.09001 * 109.46849 * 64.95881 * 21 20 19 40 40 H 1.08998 * 109.47413 * 184.96366 * 21 20 19 41 41 H 1.08998 * 109.47315 * 304.96671 * 21 20 19 42 42 H 1.09001 * 109.47487 * 59.99385 * 22 20 19 43 43 H 1.08994 * 109.47668 * 180.02562 * 22 20 19 44 44 H 1.09010 * 109.46773 * 300.00000 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4418 0.7126 0.0005 5 6 3.5299 -0.6210 0.0015 6 6 4.7970 -1.4367 0.0018 7 6 5.2252 -1.7143 -1.4406 8 6 6.5114 -2.5431 -1.4403 9 7 7.0024 -2.6856 -2.8174 10 6 8.3140 -3.3468 -2.8429 11 6 8.9523 -3.1447 -4.1930 12 1 8.4733 -2.5147 -4.9279 13 6 10.1476 -3.7643 -4.4901 14 7 10.7310 -4.5312 -3.5951 15 14 10.9385 -3.5144 -6.1639 16 1 10.0884 -2.6140 -6.9836 17 1 12.2818 -2.9055 -5.9907 18 1 11.0737 -4.8253 -6.8481 19 6 6.0321 -3.4087 -3.6501 20 6 5.0366 -2.4152 -4.2525 21 6 5.7670 -1.4882 -5.2262 22 6 3.9420 -3.1796 -4.9999 23 7 2.3031 -1.0840 0.0066 24 1 -0.3633 -0.0006 -1.0277 25 1 -0.3633 -0.8899 0.5142 26 1 -0.3634 0.8901 0.5134 27 1 5.5845 -0.8846 0.5147 28 1 4.6211 -2.3812 0.5167 29 1 4.4379 -2.2665 -1.9536 30 1 5.4013 -0.7698 -1.9555 31 1 7.2667 -2.0414 -0.8353 32 1 6.3080 -3.5293 -1.0231 33 1 8.9526 -2.9170 -2.0711 34 1 8.1869 -4.4133 -2.6570 35 1 11.5722 -4.9668 -3.8040 36 1 6.5571 -3.9281 -4.4518 37 1 5.4963 -4.1335 -3.0373 38 1 4.5867 -1.8232 -3.4555 39 1 6.1415 -2.0690 -6.0691 40 1 5.0776 -0.7255 -5.5882 41 1 6.6024 -1.0097 -4.7150 42 1 3.4217 -3.8400 -4.3062 43 1 3.2331 -2.4718 -5.4294 44 1 4.3919 -3.7716 -5.7970 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763559327.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:12 Heat of formation + Delta-G solvation = 33.145747 kcal Electronic energy + Delta-G solvation = -22461.199910 eV Core-core repulsion = 19222.688670 eV Total energy + Delta-G solvation = -3238.511240 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -46.59068 -39.51056 -37.13702 -35.99820 -35.51375 -34.34166 -32.73383 -30.12826 -29.27303 -27.85180 -27.68433 -26.22381 -24.59505 -23.48072 -22.24452 -21.73010 -20.70187 -19.12264 -18.41600 -18.34292 -16.97219 -16.59677 -16.41393 -15.60243 -15.41429 -15.21564 -14.89912 -14.68569 -14.45745 -14.22295 -13.83436 -13.78376 -13.62454 -13.40721 -13.20577 -13.03889 -12.92803 -12.77826 -12.56361 -12.45395 -12.28813 -12.25933 -12.07851 -11.86145 -11.77637 -11.61383 -11.34692 -11.20088 -11.00907 -10.75190 -10.56353 -8.89854 -8.14821 -6.22810 0.12264 1.20183 1.41053 1.42731 1.55202 1.83458 2.43073 2.70552 3.09772 3.17739 3.33381 3.88446 4.00099 4.02592 4.18681 4.26112 4.34635 4.45170 4.54773 4.57502 4.58253 4.66136 4.72892 4.76457 4.86331 4.90070 4.93145 4.94298 5.00032 5.08456 5.13635 5.15194 5.21621 5.28128 5.31162 5.33347 5.42216 5.61124 5.69923 5.76910 6.16378 6.44518 6.75933 6.95518 7.15324 7.46557 8.95529 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025895 B = 0.003591 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.031091 B = 7796.457671 C = 8311.519214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.162 3.838 3 N -0.414 5.414 4 O 0.064 5.936 5 C 0.201 3.799 6 C -0.024 4.024 7 C -0.103 4.103 8 C 0.057 3.943 9 N -0.538 5.538 10 C 0.208 3.792 11 C -0.510 4.510 12 H 0.064 0.936 13 C 0.001 3.999 14 N -0.936 5.936 15 Si 0.959 3.041 16 H -0.264 1.264 17 H -0.280 1.280 18 H -0.282 1.282 19 C 0.071 3.929 20 C -0.095 4.095 21 C -0.130 4.130 22 C -0.142 4.142 23 N -0.505 5.505 24 H 0.101 0.899 25 H 0.103 0.897 26 H 0.098 0.902 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.029 0.971 33 H 0.005 0.995 34 H -0.036 1.036 35 H 0.262 0.738 36 H 0.046 0.954 37 H 0.029 0.971 38 H 0.086 0.914 39 H 0.034 0.966 40 H 0.055 0.945 41 H 0.049 0.951 42 H 0.057 0.943 43 H 0.064 0.936 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.402 6.726 6.146 20.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.111 4.111 3 N -0.126 5.126 4 O 0.009 5.991 5 C -0.019 4.019 6 C -0.063 4.063 7 C -0.141 4.141 8 C -0.071 4.071 9 N -0.262 5.262 10 C 0.082 3.918 11 C -0.548 4.548 12 H 0.082 0.918 13 C -0.196 4.196 14 N -0.577 5.577 15 Si 0.785 3.215 16 H -0.188 1.188 17 H -0.206 1.206 18 H -0.208 1.208 19 C -0.058 4.058 20 C -0.114 4.114 21 C -0.188 4.188 22 C -0.200 4.200 23 N -0.240 5.240 24 H 0.119 0.881 25 H 0.121 0.879 26 H 0.117 0.883 27 H 0.144 0.856 28 H 0.142 0.858 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.047 0.953 33 H 0.023 0.977 34 H -0.019 1.019 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.047 0.953 38 H 0.104 0.896 39 H 0.053 0.947 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -18.813 7.602 5.986 21.156 hybrid contribution 1.086 -1.077 -0.422 1.587 sum -17.728 6.525 5.564 19.693 Atomic orbital electron populations 1.20341 0.80481 1.05744 1.05459 1.26654 1.02155 0.83124 0.99164 1.74622 0.89768 1.24865 1.23375 1.85269 1.22298 1.25410 1.66097 1.29244 0.97474 0.81827 0.93358 1.20418 0.87484 0.98803 0.99575 1.21724 0.96948 1.01143 0.94326 1.22120 0.96476 0.98279 0.90258 1.61971 1.02878 1.51700 1.09659 1.19386 0.85919 0.90215 0.96275 1.21535 1.05485 1.27650 1.00177 0.91750 1.25816 0.97958 0.95108 1.00740 1.70079 1.18565 1.32850 1.36201 0.85481 0.78326 0.77864 0.79865 1.18846 1.20604 1.20791 1.22036 0.92941 0.94487 0.96291 1.21424 0.94893 0.96687 0.98368 1.21634 1.00012 0.98815 0.98316 1.21793 0.97915 1.00181 1.00087 1.71951 1.00310 1.29882 1.21862 0.88073 0.87879 0.88340 0.85575 0.85791 0.90800 0.90812 0.90677 0.95299 0.97669 1.01862 0.92939 0.93539 0.95312 0.89597 0.94694 0.92569 0.93186 0.92441 0.91658 0.93427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.83 10.51 71.24 0.75 -0.08 16 2 C 0.16 3.66 8.22 138.47 1.14 4.80 16 3 N -0.41 -10.65 12.16 -60.34 -0.73 -11.38 16 4 O 0.06 1.58 11.31 74.81 0.85 2.43 16 5 C 0.20 4.50 7.77 88.38 0.69 5.19 16 6 C -0.02 -0.42 5.84 29.85 0.17 -0.25 16 7 C -0.10 -2.43 3.70 30.60 0.11 -2.32 16 8 C 0.06 1.74 4.84 86.30 0.42 2.16 16 9 N -0.54 -21.47 3.83 -900.78 -3.45 -24.92 16 10 C 0.21 10.63 4.67 85.56 0.40 11.03 16 11 C -0.51 -28.15 8.29 25.60 0.21 -27.94 16 12 H 0.06 3.52 7.81 -2.91 -0.02 3.50 16 13 C 0.00 0.07 5.46 84.65 0.46 0.53 16 14 N -0.94 -55.69 13.29 21.45 0.28 -55.41 16 15 Si 0.96 44.21 29.54 68.60 2.03 46.23 16 16 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 17 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 19 C 0.07 2.60 3.91 86.31 0.34 2.94 16 20 C -0.10 -2.86 2.64 -10.79 -0.03 -2.89 16 21 C -0.13 -4.23 9.14 71.98 0.66 -3.57 16 22 C -0.14 -3.60 9.19 71.98 0.66 -2.94 16 23 N -0.51 -12.27 11.55 -303.21 -3.50 -15.77 16 24 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 26 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.07 1.82 5.80 -2.39 -0.01 1.81 16 30 H 0.07 1.87 7.82 -2.39 -0.02 1.85 16 31 H 0.07 2.25 7.95 -2.39 -0.02 2.23 16 32 H 0.03 0.88 8.00 -2.39 -0.02 0.86 16 33 H 0.01 0.28 7.88 -2.39 -0.02 0.27 16 34 H -0.04 -2.05 8.06 -2.39 -0.02 -2.07 16 35 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 36 H 0.05 2.02 7.02 -2.39 -0.02 2.00 16 37 H 0.03 1.00 7.72 -2.39 -0.02 0.98 16 38 H 0.09 2.40 4.27 -2.39 -0.01 2.39 16 39 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.05 1.85 7.65 -2.39 -0.02 1.84 16 42 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -66.53 356.85 2.41 -64.12 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: 0.96 Total: 8.02 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: 5.98 Total: -13.33 kcal Atomic # 7 Polarization: -100.08 SS G_CDS: -7.40 Total: -107.48 kcal Atomic # 8 Polarization: 1.58 SS G_CDS: 0.85 Total: 2.43 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -66.53 2.41 -64.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763559327.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.267 kcal (2) G-P(sol) polarization free energy of solvation -66.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds