Wall clock time and date at job start Tue Mar 31 2020 05:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47177 * 2 1 4 4 C 1.50696 * 109.47476 * 119.99758 * 2 1 3 5 5 N 1.28004 * 120.00666 * 240.00333 * 4 2 1 6 6 N 1.40099 * 120.00304 * 180.02562 * 5 4 2 7 7 C 1.34774 * 119.99825 * 179.97438 * 6 5 4 8 8 O 1.21592 * 119.99915 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00134 * 359.97438 * 7 6 5 10 10 C 1.46506 * 120.00033 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47289 * 275.00400 * 10 9 7 12 12 C 1.52996 * 109.47131 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.47518 * 59.99828 * 12 11 10 14 14 C 1.53005 * 109.46632 * 300.00318 * 13 12 11 15 15 C 1.52996 * 109.47571 * 60.00168 * 14 13 12 16 16 C 1.53000 * 109.47246 * 240.00524 * 2 1 3 17 17 C 1.50698 * 109.47489 * 64.99229 * 16 2 1 18 18 H 1.07997 * 119.99870 * 0.02562 * 17 16 2 19 19 C 1.37876 * 120.00169 * 179.97438 * 17 16 2 20 20 N 1.31521 * 119.99760 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00013 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47139 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.46855 * 120.00852 * 21 19 17 24 24 H 1.48503 * 109.47037 * 240.00307 * 21 19 17 25 25 H 1.09005 * 109.47177 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47194 * 299.99510 * 1 2 3 27 27 H 1.08996 * 109.47708 * 60.00164 * 1 2 3 28 28 H 1.08000 * 119.99661 * 60.00277 * 4 2 1 29 29 H 0.96995 * 120.00375 * 359.97438 * 6 5 4 30 30 H 0.97000 * 120.00155 * 0.02562 * 9 7 6 31 31 H 1.09001 * 109.47060 * 35.00669 * 10 9 7 32 32 H 1.09001 * 109.46832 * 299.99854 * 11 10 9 33 33 H 1.08996 * 109.46952 * 59.99873 * 11 10 9 34 34 H 1.09001 * 109.46997 * 299.99574 * 12 11 10 35 35 H 1.09004 * 109.47552 * 179.97438 * 12 11 10 36 36 H 1.08992 * 109.47399 * 180.02562 * 13 12 11 37 37 H 1.09001 * 109.47194 * 59.99866 * 13 12 11 38 38 H 1.09001 * 109.47420 * 299.99415 * 14 13 12 39 39 H 1.09004 * 109.46832 * 179.97438 * 14 13 12 40 40 H 1.08992 * 109.47346 * 180.02562 * 15 14 13 41 41 H 1.09001 * 109.47364 * 59.99212 * 15 14 13 42 42 H 1.09003 * 109.47310 * 185.00143 * 16 2 1 43 43 H 1.09005 * 109.46808 * 304.99549 * 16 2 1 44 44 H 0.97003 * 119.99813 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 7 2.7683 -0.0883 2.0731 6 7 3.2358 -0.7489 3.2167 7 6 4.0110 -0.0940 4.1036 8 8 4.4171 -0.6675 5.0959 9 7 4.3369 1.1962 3.8900 10 6 5.1792 1.9082 4.8544 11 6 4.3057 2.4676 5.9791 12 6 5.1852 3.2117 6.9859 13 6 5.9069 4.3618 6.2806 14 6 6.7804 3.8023 5.1558 15 6 5.9009 3.0583 4.1490 16 6 2.0400 -0.7211 -1.2493 17 6 1.6412 0.0571 -2.4766 18 1 1.0805 0.9745 -2.3757 19 6 1.9932 -0.4016 -3.7283 20 7 2.6765 -1.5186 -3.8512 21 14 1.4995 0.5635 -5.2496 22 1 0.7429 1.7749 -4.8433 23 1 2.7178 0.9683 -5.9959 24 1 0.6457 -0.2855 -6.1189 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.7715 -1.7443 1.4013 29 1 3.0015 -1.6775 3.3702 30 1 4.0133 1.6536 3.0982 31 1 5.9138 1.2202 5.2728 32 1 3.5712 3.1557 5.5606 33 1 3.7913 1.6483 6.4813 34 1 5.9200 2.5239 7.4044 35 1 4.5629 3.6107 7.7870 36 1 6.5338 4.8916 6.9977 37 1 5.1721 5.0496 5.8620 38 1 7.5152 3.1145 5.5743 39 1 7.2942 4.6217 4.6530 40 1 6.5232 2.6594 3.3480 41 1 5.1660 3.7460 3.7305 42 1 3.1263 -0.7994 -1.2056 43 1 1.6054 -1.7197 -1.2952 44 1 2.9238 -1.8415 -4.7318 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765994885.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:26 Heat of formation + Delta-G solvation = -32.609583 kcal Electronic energy + Delta-G solvation = -21686.851775 eV Core-core repulsion = 18445.489170 eV Total energy + Delta-G solvation = -3241.362605 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.14810 -38.36174 -37.09248 -34.87075 -34.05624 -32.44462 -30.96855 -30.67948 -28.95283 -27.03568 -24.33880 -22.96530 -22.72907 -22.02633 -20.43909 -20.17149 -19.25808 -17.93361 -17.47484 -16.26468 -15.80960 -15.40310 -15.08940 -14.61190 -14.48939 -14.32089 -13.98060 -13.48779 -13.19969 -13.03792 -12.92326 -12.64880 -12.39849 -12.04044 -11.67575 -11.45042 -11.35232 -11.23418 -10.97411 -10.91641 -10.84485 -10.65445 -10.50058 -10.43979 -10.26508 -10.13251 -9.85252 -9.59061 -9.14350 -9.04173 -8.44480 -8.41591 -6.07230 -4.09623 2.24422 2.64909 3.27450 3.35752 3.38341 3.40090 3.62457 4.40820 4.48753 4.55635 4.72075 4.94959 5.04273 5.18655 5.23961 5.27195 5.28956 5.29470 5.43220 5.47207 5.58008 5.81876 5.84685 5.86696 5.88552 5.91654 6.01174 6.02504 6.11264 6.16815 6.22401 6.35696 6.61218 6.71643 6.84636 6.90003 6.97609 7.50147 7.55196 7.67255 7.90583 8.28466 8.31669 8.75332 8.96057 9.54722 11.04137 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021283 B = 0.002984 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.302503 B = 9379.688365 C =10027.334684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.041 4.041 3 H 0.079 0.921 4 C 0.120 3.880 5 N -0.283 5.283 6 N -0.599 5.599 7 C 0.734 3.266 8 O -0.598 6.598 9 N -0.727 5.727 10 C 0.161 3.839 11 C -0.131 4.131 12 C -0.116 4.116 13 C -0.122 4.122 14 C -0.115 4.115 15 C -0.128 4.128 16 C 0.032 3.968 17 C -0.516 4.516 18 H 0.060 0.940 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.892 3.108 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.284 1.284 25 H 0.050 0.950 26 H 0.035 0.965 27 H 0.074 0.926 28 H 0.104 0.896 29 H 0.394 0.606 30 H 0.410 0.590 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.019 0.981 43 H 0.021 0.979 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.158 8.811 17.198 19.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.062 4.062 3 H 0.097 0.903 4 C -0.095 4.095 5 N -0.089 5.089 6 N -0.345 5.345 7 C 0.434 3.566 8 O -0.475 6.475 9 N -0.382 5.382 10 C 0.056 3.944 11 C -0.169 4.169 12 C -0.154 4.154 13 C -0.159 4.159 14 C -0.153 4.153 15 C -0.166 4.166 16 C -0.006 4.006 17 C -0.555 4.555 18 H 0.078 0.922 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.720 3.280 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.093 0.907 28 H 0.121 0.879 29 H 0.235 0.765 30 H 0.246 0.754 31 H 0.104 0.896 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.037 0.963 43 H 0.040 0.960 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.118 9.249 18.181 20.810 hybrid contribution -0.807 -0.765 -1.349 1.748 sum 3.311 8.484 16.831 19.138 Atomic orbital electron populations 1.21679 0.94291 1.01567 1.01157 1.20399 0.95561 0.99963 0.90300 0.90270 1.26632 0.91088 0.97994 0.93776 1.73935 1.13412 1.25649 0.95922 1.46455 1.53207 1.13874 1.20915 1.15434 0.77985 0.81764 0.81385 1.90951 1.59363 1.68159 1.29037 1.45146 1.54888 1.10581 1.27551 1.20847 0.91951 0.92982 0.88647 1.21956 0.98400 1.00043 0.96537 1.21493 0.98893 0.97324 0.97710 1.21581 0.98926 0.97794 0.97624 1.21477 0.97810 0.99753 0.96241 1.21818 0.99341 0.96942 0.98504 1.19137 0.96524 0.95645 0.89269 1.21183 1.35175 1.08493 0.90602 0.92170 1.25012 0.95141 0.95065 0.99196 1.69973 1.38699 1.21151 1.23526 0.86537 0.78292 0.80087 0.83102 1.19643 1.21069 1.21055 0.93071 0.94574 0.90712 0.87874 0.76512 0.75410 0.89647 0.91813 0.91471 0.91787 0.91889 0.91983 0.91859 0.91705 0.91501 0.91079 0.91179 0.96298 0.96026 0.92983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 8.98 37.16 0.33 -1.74 16 2 C -0.04 -0.74 2.75 -91.78 -0.25 -0.99 16 3 H 0.08 1.47 8.11 -51.93 -0.42 1.05 16 4 C 0.12 1.90 9.66 -13.88 -0.13 1.77 16 5 N -0.28 -4.49 10.24 32.67 0.33 -4.15 16 6 N -0.60 -9.13 6.26 27.63 0.17 -8.96 16 7 C 0.73 11.85 8.64 -86.92 -0.75 11.09 16 8 O -0.60 -11.15 16.84 5.28 0.09 -11.06 16 9 N -0.73 -9.87 5.04 -58.67 -0.30 -10.16 16 10 C 0.16 1.85 2.46 -67.93 -0.17 1.68 16 11 C -0.13 -1.37 5.49 -26.73 -0.15 -1.52 16 12 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 13 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 14 C -0.11 -0.88 5.92 -26.73 -0.16 -1.04 16 15 C -0.13 -1.18 5.39 -26.73 -0.14 -1.33 16 16 C 0.03 0.76 4.43 -27.88 -0.12 0.63 16 17 C -0.52 -13.36 8.41 -34.44 -0.29 -13.65 16 18 H 0.06 1.50 7.06 -52.49 -0.37 1.13 16 19 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 20 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16 21 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 1.30 6.95 -51.93 -0.36 0.94 16 28 H 0.10 1.45 8.00 -52.49 -0.42 1.03 16 29 H 0.39 5.43 8.73 -182.60 -1.59 3.83 16 30 H 0.41 5.42 7.64 -40.82 -0.31 5.11 16 31 H 0.09 1.11 7.58 -51.93 -0.39 0.72 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 358.32 15.07 5.40 5.40 Total: -1.00 -29.83 358.32 -9.76 -39.59 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -8.93 Total: 4.50 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -2.25 Total: -5.83 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: 0.95 Total: -48.21 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.83 -9.76 -39.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765994885.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.979 kcal (2) G-P(sol) polarization free energy of solvation -29.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds