Wall clock time and date at job start Tue Mar 31 2020 05:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48503 * 109.47142 * 239.99837 * 3 2 1 5 5 H 1.48498 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47267 * 119.99771 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00123 * 163.08901 * 7 2 1 9 9 N 1.36934 * 120.00015 * 343.08772 * 7 2 1 10 10 C 1.46928 * 120.63265 * 331.83027 * 9 7 2 11 11 C 1.53201 * 108.89275 * 233.51651 * 10 9 7 12 12 C 1.53071 * 109.29371 * 305.57634 * 11 10 9 13 13 C 1.53005 * 109.45089 * 181.24490 * 12 11 10 14 14 N 1.46496 * 109.46929 * 64.78642 * 13 12 11 15 15 C 1.34779 * 119.99828 * 179.97438 * 14 13 12 16 16 O 1.21582 * 119.99719 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99823 * 180.02562 * 15 14 13 18 18 C 1.47016 * 125.65055 * 359.69396 * 17 15 14 19 19 C 1.54317 * 107.27734 * 180.96764 * 18 17 15 20 20 C 1.55155 * 102.86086 * 22.52689 * 19 18 17 21 21 C 1.47427 * 125.64505 * 180.02562 * 17 15 14 22 22 C 1.53045 * 109.66047 * 61.15498 * 12 11 10 23 23 C 1.46932 * 120.63392 * 151.80754 * 9 7 2 24 24 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.58613 * 353.36947 * 10 9 7 26 26 H 1.08995 * 109.59058 * 113.65812 * 10 9 7 27 27 H 1.09002 * 109.49837 * 65.38934 * 11 10 9 28 28 H 1.09003 * 109.49550 * 185.48233 * 11 10 9 29 29 H 1.09001 * 109.33784 * 301.13345 * 12 11 10 30 30 H 1.08996 * 109.47018 * 184.78957 * 13 12 11 31 31 H 1.09002 * 109.46982 * 304.78936 * 13 12 11 32 32 H 0.97006 * 120.00375 * 0.02562 * 14 13 12 33 33 H 1.08994 * 109.88237 * 300.51600 * 18 17 15 34 34 H 1.09007 * 109.87976 * 61.68118 * 18 17 15 35 35 H 1.09006 * 110.92564 * 264.11362 * 19 18 17 36 36 H 1.08996 * 110.59489 * 140.78945 * 19 18 17 37 37 H 1.09005 * 111.00348 * 206.23225 * 20 19 18 38 38 H 1.09000 * 111.00611 * 82.38085 * 20 19 18 39 39 H 1.09003 * 110.37224 * 274.67667 * 21 17 15 40 40 H 1.09003 * 110.36792 * 36.89187 * 21 17 15 41 41 H 1.09002 * 109.49555 * 178.74703 * 22 12 11 42 42 H 1.08999 * 109.49562 * 58.65207 * 22 12 11 43 43 H 1.08996 * 109.59017 * 246.20330 * 23 9 7 44 44 H 1.09009 * 109.58200 * 6.48305 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2715 9 7 1.3701 -2.3622 0.3460 10 6 0.2261 -2.3400 1.2678 11 6 0.4939 -3.3200 2.4145 12 6 0.8120 -4.7009 1.8358 13 6 1.0496 -5.6900 2.9788 14 7 -0.1889 -5.8604 3.7424 15 6 -0.2175 -6.6915 4.8031 16 8 0.7846 -7.2993 5.1264 17 7 -1.3571 -6.8487 5.5053 18 6 -2.6337 -6.1738 5.2293 19 6 -3.6405 -6.6414 6.3014 20 6 -2.7197 -7.1090 7.4593 21 6 -1.5280 -7.7209 6.6816 22 6 2.0674 -4.6174 0.9645 23 6 1.8137 -3.6528 -0.1983 24 1 -0.4850 0.8400 -0.0004 25 1 0.0993 -1.3344 1.6687 26 1 -0.6775 -2.6380 0.7360 27 1 1.3427 -2.9695 3.0019 28 1 -0.3882 -3.3843 3.0516 29 1 -0.0283 -5.0408 1.2304 30 1 1.3591 -6.6513 2.5689 31 1 1.8310 -5.3062 3.6347 32 1 -0.9885 -5.3758 3.4842 33 1 -2.5021 -5.0935 5.2879 34 1 -2.9938 -6.4524 4.2389 35 1 -4.2462 -7.4690 5.9320 36 1 -4.2721 -5.8128 6.6215 37 1 -3.2146 -7.8625 8.0721 38 1 -2.3965 -6.2640 8.0672 39 1 -1.7619 -8.7385 6.3687 40 1 -0.6272 -7.7110 7.2953 41 1 2.3041 -5.6063 0.5718 42 1 2.9024 -4.2538 1.5634 43 1 1.0401 -4.0603 -0.8491 44 1 2.7332 -3.5129 -0.7669 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768497774.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:31 Heat of formation + Delta-G solvation = -17.338727 kcal Electronic energy + Delta-G solvation = -22556.553190 eV Core-core repulsion = 19315.852779 eV Total energy + Delta-G solvation = -3240.700411 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.27065 -38.19032 -37.31655 -34.86330 -32.96202 -31.68948 -30.43697 -29.82887 -29.20048 -26.71100 -24.28359 -23.25499 -22.17376 -21.50029 -20.95877 -19.93551 -19.08474 -18.13991 -16.80133 -16.70021 -15.85791 -15.04813 -14.84194 -14.59244 -14.11285 -13.83488 -13.64471 -13.51175 -13.39097 -13.16226 -12.98162 -12.56734 -12.34647 -12.24906 -11.78664 -11.65909 -11.51368 -11.37061 -11.08197 -10.96771 -10.70291 -10.50915 -10.25062 -10.20684 -10.12709 -9.88523 -9.55761 -9.42458 -9.04519 -8.56296 -8.45609 -6.65656 -5.78336 -3.20504 2.59698 3.24259 3.38954 3.44391 3.46259 3.95795 4.27772 4.38679 4.50597 4.59580 4.96562 5.08130 5.15143 5.28631 5.31302 5.39243 5.41086 5.45033 5.52924 5.55810 5.60506 5.66616 5.83641 5.92050 5.97363 6.01723 6.16661 6.19163 6.31777 6.48307 6.58210 6.64047 6.70407 6.78764 6.84645 7.00161 7.02534 7.37512 7.65203 7.80143 7.98531 8.46329 8.63263 9.22569 9.86128 10.43017 11.30179 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025931 B = 0.003463 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.530228 B = 8084.051848 C = 8710.047203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.171 3.829 11 C -0.134 4.134 12 C -0.090 4.090 13 C 0.143 3.857 14 N -0.737 5.737 15 C 0.720 3.280 16 O -0.594 6.594 17 N -0.641 5.641 18 C 0.096 3.904 19 C -0.129 4.129 20 C -0.135 4.135 21 C 0.125 3.875 22 C -0.124 4.124 23 C 0.146 3.854 24 H 0.254 0.746 25 H 0.086 0.914 26 H 0.016 0.984 27 H 0.056 0.944 28 H 0.044 0.956 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.397 0.603 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.052 0.948 42 H 0.061 0.939 43 H 0.017 0.983 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.793 -13.420 11.594 19.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.382 4.382 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.045 3.955 11 C -0.173 4.173 12 C -0.109 4.109 13 C 0.019 3.981 14 N -0.392 5.392 15 C 0.422 3.578 16 O -0.473 6.473 17 N -0.381 5.381 18 C -0.027 4.027 19 C -0.167 4.167 20 C -0.173 4.173 21 C 0.001 3.999 22 C -0.164 4.164 23 C 0.020 3.980 24 H 0.063 0.937 25 H 0.104 0.896 26 H 0.034 0.966 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.231 0.769 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.034 0.966 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.057 -13.691 11.735 19.364 hybrid contribution -0.087 1.147 -0.157 1.161 sum -7.143 -12.544 11.578 18.505 Atomic orbital electron populations 1.70021 1.05248 1.25540 1.54057 1.25036 0.95291 0.98387 1.00952 0.86372 0.78917 0.83353 0.78145 1.20898 1.21656 1.21043 1.19157 0.92543 0.84886 1.41572 0.91764 1.44043 1.35911 1.01554 1.50020 1.20753 0.88605 0.98134 0.87959 1.22250 0.99969 0.95338 0.99768 1.21315 0.99311 0.95218 0.95075 1.21421 0.84973 0.99069 0.92661 1.45237 1.15253 1.47640 1.31070 1.15467 0.82064 0.80412 0.79854 1.90907 1.32938 1.52220 1.71212 1.47592 1.09600 1.48308 1.32588 1.22016 0.83931 0.97463 0.99276 1.22600 0.97109 1.01873 0.95155 1.22808 0.95814 1.01396 0.97279 1.22032 0.98717 0.93234 0.85889 1.21977 0.96579 0.99240 0.98589 1.20886 0.97624 0.86857 0.92659 0.93652 0.89588 0.96590 0.92527 0.93722 0.91421 0.92157 0.91835 0.76880 0.91388 0.91555 0.90465 0.89890 0.89760 0.90515 0.91850 0.90463 0.92886 0.92022 0.96552 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.04 11.20 55.49 0.62 -25.42 16 2 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 21.68 29.59 -169.99 -5.03 16.65 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.25 -6.91 9.58 -15.06 -0.14 -7.06 16 8 H 0.06 1.73 7.88 -52.49 -0.41 1.32 16 9 N -0.59 -14.73 3.00 -172.31 -0.52 -15.25 16 10 C 0.17 3.99 5.30 -3.71 -0.02 3.97 16 11 C -0.13 -2.46 5.25 -26.59 -0.14 -2.60 16 12 C -0.09 -1.46 2.18 -90.56 -0.20 -1.65 16 13 C 0.14 2.16 5.07 -4.04 -0.02 2.14 16 14 N -0.74 -10.35 5.23 -65.23 -0.34 -10.69 16 15 C 0.72 11.09 8.49 -86.92 -0.74 10.35 16 16 O -0.59 -11.41 16.60 5.29 0.09 -11.32 16 17 N -0.64 -7.60 3.33 -176.25 -0.59 -8.18 16 18 C 0.10 0.83 6.14 -3.07 -0.02 0.81 16 19 C -0.13 -0.79 6.95 -24.90 -0.17 -0.97 16 20 C -0.13 -0.88 7.08 -24.59 -0.17 -1.05 16 21 C 0.12 1.20 6.91 -2.54 -0.02 1.19 16 22 C -0.12 -2.12 5.37 -26.61 -0.14 -2.26 16 23 C 0.15 3.03 6.52 -3.71 -0.02 3.01 16 24 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.09 2.26 6.06 -51.93 -0.31 1.95 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.04 0.72 7.15 -51.93 -0.37 0.35 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.40 4.88 6.63 -40.82 -0.27 4.61 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.84 8.03 -51.93 -0.42 0.42 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.05 1.11 7.93 -51.92 -0.41 0.70 16 LS Contribution 344.14 15.07 5.19 5.19 Total: -1.00 -32.43 344.14 -10.15 -42.58 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -7.68 Total: 0.63 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -1.90 Total: 5.83 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -0.82 Total: -59.55 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.09 Total: -11.32 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.43 -10.15 -42.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768497774.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.237 kcal (2) G-P(sol) polarization free energy of solvation -32.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds