Wall clock time and date at job start Tue Mar 31 2020 05:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46654 * 2 1 4 4 C 1.50697 * 109.47042 * 240.00205 * 2 1 3 5 5 N 1.29947 * 126.28900 * 299.97548 * 4 2 1 6 6 O 1.21295 * 110.25445 * 179.72900 * 5 4 2 7 7 C 1.33648 * 109.80864 * 0.46234 * 6 5 4 8 8 C 1.50701 * 126.55018 * 179.80237 * 7 6 5 9 9 H 1.09002 * 109.47060 * 164.69081 * 8 7 6 10 10 N 1.46901 * 109.46921 * 44.68900 * 8 7 6 11 11 C 1.53002 * 109.47419 * 284.69161 * 8 7 6 12 12 C 1.52997 * 109.47469 * 184.99997 * 11 8 7 13 13 C 1.50699 * 109.47339 * 179.97438 * 12 11 8 14 14 H 1.07999 * 119.99742 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99999 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00224 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00088 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.46828 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47218 * 119.99677 * 17 15 13 20 20 H 1.48499 * 109.47069 * 239.99894 * 17 15 13 21 21 N 1.31130 * 106.89707 * 359.54205 * 7 6 5 22 22 C 1.52999 * 109.47330 * 119.99996 * 2 1 3 23 23 C 1.53002 * 109.47076 * 180.02562 * 22 2 1 24 24 C 1.52999 * 109.46813 * 299.99937 * 22 2 1 25 25 C 1.53002 * 109.47159 * 60.00061 * 22 2 1 26 26 H 1.08997 * 109.47653 * 59.99741 * 1 2 3 27 27 H 1.09004 * 109.47171 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47023 * 299.99692 * 1 2 3 29 29 H 1.00898 * 111.00245 * 299.99784 * 10 8 7 30 30 H 1.00904 * 111.00313 * 63.95601 * 10 8 7 31 31 H 1.09008 * 109.46873 * 305.00091 * 11 8 7 32 32 H 1.08997 * 109.47047 * 64.99780 * 11 8 7 33 33 H 1.08997 * 109.47151 * 300.00410 * 12 11 8 34 34 H 1.09006 * 109.46918 * 59.99351 * 12 11 8 35 35 H 0.96998 * 120.00384 * 179.97438 * 16 15 13 36 36 H 1.09002 * 109.47014 * 59.99939 * 23 22 2 37 37 H 1.08993 * 109.46931 * 180.02562 * 23 22 2 38 38 H 1.09001 * 109.46787 * 299.99564 * 23 22 2 39 39 H 1.08998 * 109.47324 * 60.00646 * 24 22 2 40 40 H 1.09004 * 109.46814 * 180.02562 * 24 22 2 41 41 H 1.08994 * 109.47386 * 299.99607 * 24 22 2 42 42 H 1.08998 * 109.46948 * 59.99839 * 25 22 2 43 43 H 1.09000 * 109.47146 * 180.02562 * 25 22 2 44 44 H 1.08997 * 109.46925 * 299.99757 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7953 -1.9459 -1.5559 6 8 2.3373 -2.2146 -2.6072 7 6 2.9997 -1.1464 -3.0613 8 6 3.8068 -1.0639 -4.3312 9 1 3.9983 -0.0183 -4.5728 10 7 3.0583 -1.6909 -5.4287 11 6 5.1372 -1.7946 -4.1385 12 6 6.0079 -1.6055 -5.3823 13 6 7.3185 -2.3247 -5.1922 14 1 7.5112 -2.8626 -4.2757 15 6 8.2718 -2.2952 -6.1878 16 7 8.0373 -1.6397 -7.3036 17 14 9.8960 -3.1873 -5.9525 18 1 9.9117 -3.8439 -4.6205 19 1 10.0548 -4.2144 -7.0131 20 1 11.0130 -2.2123 -6.0363 21 7 2.8086 -0.1821 -2.1934 22 6 2.0401 -0.7212 1.2492 23 6 3.5701 -0.7206 1.2495 24 6 1.5301 0.0001 2.4984 25 6 1.5301 -2.1638 1.2492 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.8683 -2.6615 -5.2286 30 1 2.2049 -1.1871 -5.6186 31 1 5.6527 -1.3874 -3.2687 32 1 4.9491 -2.8572 -3.9849 33 1 5.4924 -2.0126 -6.2520 34 1 6.1959 -0.5428 -5.5359 35 1 8.7081 -1.6186 -8.0039 36 1 3.9330 0.3072 1.2497 37 1 3.9334 -1.2348 2.1392 38 1 3.9337 -1.2343 0.3595 39 1 0.4401 0.0000 2.4985 40 1 1.8938 -0.5135 3.3884 41 1 1.8934 1.0277 2.4984 42 1 1.8934 -2.6775 0.3592 43 1 1.8931 -2.6775 2.1394 44 1 0.4401 -2.1638 1.2493 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822827879.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:39 Heat of formation + Delta-G solvation = 38.459712 kcal Electronic energy + Delta-G solvation = -22609.696845 eV Core-core repulsion = 19371.416035 eV Total energy + Delta-G solvation = -3238.280809 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.46090 -38.93401 -36.69836 -35.27854 -33.10091 -31.99801 -30.72090 -30.25835 -27.68712 -27.52360 -26.47673 -24.93148 -24.10218 -23.00710 -21.32462 -20.14903 -18.56979 -17.91368 -17.33250 -16.29851 -15.96020 -15.61057 -15.10197 -14.91560 -14.49618 -14.33943 -14.06450 -13.99094 -12.98719 -12.68295 -12.49003 -12.45208 -12.31586 -12.07436 -12.06067 -11.96299 -11.79501 -11.51471 -11.47820 -11.04876 -10.95171 -10.92046 -10.82005 -10.65537 -10.60312 -10.52739 -9.92287 -9.80778 -9.34963 -9.01299 -8.81381 -8.28453 -5.95316 -3.97400 1.26335 2.33650 2.96205 3.33889 3.41508 3.45353 3.59508 4.05414 4.44631 4.49764 4.53116 4.67559 4.73324 4.91849 5.05793 5.11462 5.25301 5.39596 5.40357 5.43154 5.44148 5.48760 5.59698 5.64848 5.70046 5.70643 5.72962 5.82196 5.88554 5.91332 6.03435 6.08302 6.19758 6.28856 6.41103 6.57366 7.00803 7.17358 7.51792 7.74789 7.92200 8.09014 8.29980 8.45776 9.10126 9.65978 11.15643 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025386 B = 0.003502 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.684734 B = 7993.880936 C = 8633.063421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.009 3.991 3 H 0.099 0.901 4 C 0.178 3.822 5 N -0.385 5.385 6 O 0.066 5.934 7 C 0.159 3.841 8 C 0.185 3.815 9 H 0.123 0.877 10 N -0.813 5.813 11 C -0.101 4.101 12 C 0.031 3.969 13 C -0.522 4.522 14 H 0.053 0.947 15 C 0.058 3.942 16 N -0.892 5.892 17 Si 0.889 3.111 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.285 1.285 21 N -0.486 5.486 22 C -0.062 4.062 23 C -0.141 4.141 24 C -0.140 4.140 25 C -0.152 4.152 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.349 0.651 30 H 0.340 0.660 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.037 0.963 34 H 0.016 0.984 35 H 0.259 0.741 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.073 0.927 43 H 0.053 0.947 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.130 2.993 15.708 22.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.011 4.011 3 H 0.117 0.883 4 C -0.095 4.095 5 N -0.095 5.095 6 O 0.011 5.989 7 C -0.064 4.064 8 C 0.070 3.930 9 H 0.141 0.859 10 N -0.341 5.341 11 C -0.140 4.140 12 C -0.006 4.006 13 C -0.560 4.560 14 H 0.071 0.929 15 C -0.143 4.143 16 N -0.531 5.531 17 Si 0.717 3.283 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.211 1.211 21 N -0.219 5.219 22 C -0.063 4.063 23 C -0.199 4.199 24 C -0.197 4.197 25 C -0.210 4.210 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.163 0.837 30 H 0.152 0.848 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.034 0.966 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.072 0.928 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.858 3.061 15.704 22.527 hybrid contribution 0.331 -0.619 0.650 0.957 sum -15.527 2.442 16.354 22.683 Atomic orbital electron populations 1.21949 0.93193 1.03025 1.02430 1.19649 0.96075 0.98661 0.86682 0.88315 1.25683 0.96674 0.88615 0.98500 1.74535 1.18746 1.17388 0.98838 1.85260 1.48178 1.38228 1.27216 1.31158 0.94271 0.80937 1.00056 1.20819 0.92030 1.02855 0.77257 0.85893 1.58820 1.27385 1.07326 1.40575 1.21830 0.91115 0.98488 1.02543 1.19023 0.92804 0.97273 0.91470 1.21281 1.00586 1.32316 1.01847 0.92876 1.24983 0.98445 0.95588 0.95289 1.69980 1.34654 1.42212 1.06268 0.86590 0.84046 0.79587 0.78081 1.19849 1.21034 1.21081 1.71936 1.17019 1.29699 1.03243 1.20553 0.96006 0.96118 0.93594 1.21874 0.94044 1.02138 1.01804 1.21905 1.01188 1.00226 0.96429 1.22117 1.01163 0.94986 1.02688 0.92474 0.91544 0.90934 0.83731 0.84770 0.92390 0.92474 0.94461 0.96587 0.93114 0.92221 0.92301 0.93119 0.92122 0.92244 0.92369 0.90861 0.92805 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.47 37.16 0.31 -1.03 16 2 C 0.01 0.10 2.23 -91.77 -0.20 -0.10 16 3 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 4 C 0.18 2.53 5.30 -156.37 -0.83 1.70 16 5 N -0.38 -5.72 9.53 30.90 0.29 -5.43 16 6 O 0.07 1.01 11.29 18.09 0.20 1.22 16 7 C 0.16 2.46 7.31 -13.06 -0.10 2.37 16 8 C 0.19 2.96 3.29 -68.86 -0.23 2.74 16 9 H 0.12 2.00 8.14 -51.93 -0.42 1.57 16 10 N -0.81 -11.68 8.67 -5.65 -0.05 -11.72 16 11 C -0.10 -1.98 4.78 -26.73 -0.13 -2.11 16 12 C 0.03 0.78 4.86 -27.89 -0.14 0.65 16 13 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 14 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 17 Si 0.89 21.62 29.54 -169.99 -5.02 16.59 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 N -0.49 -7.70 11.55 -9.87 -0.11 -7.81 16 22 C -0.06 -0.61 0.57 -154.51 -0.09 -0.70 16 23 C -0.14 -1.57 8.23 37.16 0.31 -1.27 16 24 C -0.14 -1.06 8.12 37.16 0.30 -0.75 16 25 C -0.15 -1.60 7.72 37.16 0.29 -1.31 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.64 6.43 -51.93 -0.33 0.31 16 28 H 0.07 0.51 6.43 -51.93 -0.33 0.17 16 29 H 0.35 4.66 8.97 -39.29 -0.35 4.31 16 30 H 0.34 4.03 9.06 -39.29 -0.36 3.67 16 31 H 0.06 1.16 8.14 -51.92 -0.42 0.73 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.70 7.22 -51.93 -0.37 0.32 16 39 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.94 5.51 -51.93 -0.29 0.66 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.56 6.43 -51.93 -0.33 0.22 16 LS Contribution 350.48 15.07 5.28 5.28 Total: -1.00 -30.56 350.48 -6.88 -37.43 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -7.30 Total: 3.44 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -0.91 Total: -13.15 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: 0.87 Total: -50.82 kcal Atomic # 8 Polarization: 1.01 SS G_CDS: 0.20 Total: 1.22 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.56 -6.88 -37.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822827879.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.892 kcal (2) G-P(sol) polarization free energy of solvation -30.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds