Wall clock time and date at job start Tue Mar 31 2020 05:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47360 * 2 1 4 4 C 1.50706 * 109.46800 * 119.99767 * 2 1 3 5 5 N 1.29950 * 126.28372 * 59.68930 * 4 2 1 6 6 O 1.21305 * 110.24497 * 179.84328 * 5 4 2 7 7 C 1.33645 * 109.81475 * 0.42197 * 6 5 4 8 8 C 1.50693 * 126.55441 * 179.76152 * 7 6 5 9 9 H 1.08999 * 109.47657 * 194.97595 * 8 7 6 10 10 N 1.46906 * 109.47085 * 314.97730 * 8 7 6 11 11 C 1.53001 * 109.47140 * 74.97307 * 8 7 6 12 12 C 1.53002 * 109.47128 * 175.00341 * 11 8 7 13 13 C 1.50702 * 109.47435 * 180.02562 * 12 11 8 14 14 H 1.08001 * 119.99392 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00031 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99816 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 120.00216 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47122 * 90.00432 * 17 15 13 19 19 H 1.48502 * 109.47034 * 210.00166 * 17 15 13 20 20 H 1.48499 * 109.47070 * 330.00288 * 17 15 13 21 21 N 1.31133 * 106.89230 * 359.74123 * 7 6 5 22 22 C 1.52999 * 109.47159 * 239.99386 * 2 1 3 23 23 C 1.52997 * 109.47317 * 300.00546 * 22 2 1 24 24 C 1.52992 * 109.46961 * 180.02562 * 22 2 1 25 25 C 1.53006 * 109.46623 * 60.00365 * 22 2 1 26 26 H 1.09001 * 109.46812 * 300.00367 * 1 2 3 27 27 H 1.09002 * 109.46935 * 60.00025 * 1 2 3 28 28 H 1.08992 * 109.47061 * 180.02562 * 1 2 3 29 29 H 1.00902 * 110.99828 * 296.04596 * 10 8 7 30 30 H 1.00900 * 110.99807 * 59.99422 * 10 8 7 31 31 H 1.09001 * 109.47227 * 295.00301 * 11 8 7 32 32 H 1.08998 * 109.46919 * 55.00557 * 11 8 7 33 33 H 1.09001 * 109.47034 * 300.00078 * 12 11 8 34 34 H 1.08997 * 109.47523 * 59.99696 * 12 11 8 35 35 H 0.96998 * 119.99900 * 179.97438 * 16 15 13 36 36 H 1.09002 * 109.47153 * 299.99641 * 23 22 2 37 37 H 1.09001 * 109.46832 * 179.97438 * 23 22 2 38 38 H 1.09004 * 109.47261 * 59.99813 * 23 22 2 39 39 H 1.09001 * 109.47066 * 180.02562 * 24 22 2 40 40 H 1.08996 * 109.47747 * 300.00196 * 24 22 2 41 41 H 1.09002 * 109.47103 * 60.00608 * 24 22 2 42 42 H 1.08993 * 109.46955 * 300.00075 * 25 22 2 43 43 H 1.09000 * 109.47050 * 59.99904 * 25 22 2 44 44 H 1.09001 * 109.47002 * 179.97438 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 7 1.7902 -1.9442 1.5590 6 8 2.3407 -2.2159 2.6052 7 6 2.9990 -1.1462 3.0618 8 6 3.8061 -1.0637 4.3317 9 1 3.9984 -0.0182 4.5728 10 7 3.0570 -1.6895 5.4296 11 6 5.1358 -1.7957 4.1394 12 6 6.0066 -1.6066 5.3831 13 6 7.3166 -2.3270 5.1935 14 1 7.5086 -2.8662 4.2776 15 6 8.2695 -2.2986 6.1895 16 7 9.4125 -2.9278 6.0242 17 14 7.9370 -1.3666 7.7739 18 1 7.2945 -2.2752 8.7572 19 1 9.2185 -0.8623 8.3297 20 1 7.0340 -0.2214 7.4943 21 7 2.8087 -0.1823 2.1934 22 6 2.0401 -0.7214 -1.2491 23 6 1.5300 -2.1638 -1.2491 24 6 3.5700 -0.7219 -1.2488 25 6 1.5301 -0.0001 -2.4984 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 2.2041 -1.1849 5.6191 30 1 2.8661 -2.6600 5.2299 31 1 4.9468 -2.8582 3.9863 32 1 5.6517 -1.3893 3.2694 33 1 6.1956 -0.5440 5.5362 34 1 5.4908 -2.0128 6.2531 35 1 10.0830 -2.9076 6.7248 36 1 1.8933 -2.6777 -0.3591 37 1 1.8930 -2.6775 -2.1393 38 1 0.4399 -2.1638 -1.2491 39 1 3.9333 -1.2354 -2.1389 40 1 3.9338 0.3055 -1.2486 41 1 3.9329 -1.2360 -0.3588 42 1 0.4401 0.0000 -2.4984 43 1 1.8934 1.0276 -2.4984 44 1 1.8937 -0.5137 -3.3884 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822827880.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:42 Heat of formation + Delta-G solvation = 41.516839 kcal Electronic energy + Delta-G solvation = -22656.127271 eV Core-core repulsion = 19417.979029 eV Total energy + Delta-G solvation = -3238.148242 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.51996 -38.95730 -36.83870 -35.34145 -33.07694 -32.05146 -30.82673 -30.57166 -27.70377 -27.55317 -26.82917 -24.97140 -24.11809 -23.00209 -21.19318 -20.13076 -18.61866 -17.98132 -17.39779 -16.67041 -16.07554 -15.68322 -15.17748 -15.01998 -14.51469 -14.25123 -14.04735 -13.91642 -13.02331 -12.79656 -12.68380 -12.50971 -12.43685 -12.30326 -12.10196 -11.98515 -11.89508 -11.60321 -11.50650 -11.13724 -11.07096 -10.93685 -10.84833 -10.78839 -10.64629 -10.19216 -9.94439 -9.77577 -9.49465 -9.15089 -8.96756 -8.47811 -5.99908 -3.98001 1.20238 2.27847 2.88773 3.37355 3.44058 3.49281 3.53987 4.00532 4.42030 4.49833 4.50759 4.60660 4.65903 4.88140 5.03021 5.09418 5.21356 5.28285 5.35570 5.38468 5.41295 5.47754 5.58354 5.59808 5.62440 5.69213 5.69390 5.75703 5.85926 5.88915 6.01943 6.04158 6.17890 6.25248 6.28467 6.40118 6.80775 7.01691 7.34106 7.39213 7.51384 7.83736 8.24059 8.56690 9.04442 9.62532 11.13541 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028638 B = 0.003549 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.501883 B = 7887.579774 C = 8359.668116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.009 3.991 3 H 0.099 0.901 4 C 0.179 3.821 5 N -0.383 5.383 6 O 0.068 5.932 7 C 0.157 3.843 8 C 0.183 3.817 9 H 0.123 0.877 10 N -0.817 5.817 11 C -0.093 4.093 12 C -0.003 4.003 13 C -0.522 4.522 14 H 0.069 0.931 15 C 0.066 3.934 16 N -0.906 5.906 17 Si 0.882 3.118 18 H -0.277 1.277 19 H -0.291 1.291 20 H -0.263 1.263 21 N -0.484 5.484 22 C -0.062 4.062 23 C -0.152 4.152 24 C -0.141 4.141 25 C -0.140 4.140 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.341 0.659 30 H 0.351 0.649 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.015 0.985 34 H 0.031 0.969 35 H 0.262 0.738 36 H 0.072 0.928 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.050 0.950 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.517 6.005 -12.984 24.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.011 4.011 3 H 0.117 0.883 4 C -0.094 4.094 5 N -0.093 5.093 6 O 0.013 5.987 7 C -0.066 4.066 8 C 0.068 3.932 9 H 0.141 0.859 10 N -0.346 5.346 11 C -0.132 4.132 12 C -0.041 4.041 13 C -0.560 4.560 14 H 0.087 0.913 15 C -0.135 4.135 16 N -0.545 5.545 17 Si 0.710 3.290 18 H -0.203 1.203 19 H -0.217 1.217 20 H -0.188 1.188 21 N -0.217 5.217 22 C -0.063 4.063 23 C -0.210 4.210 24 C -0.199 4.199 25 C -0.197 4.197 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.154 0.846 30 H 0.165 0.835 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.034 0.966 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.160 5.995 -13.062 23.952 hybrid contribution -0.619 0.236 0.240 0.704 sum -19.779 6.230 -12.822 24.381 Atomic orbital electron populations 1.21951 0.93173 1.03045 1.02434 1.19661 0.96087 0.98666 0.86675 0.88299 1.25691 0.96489 0.88722 0.98499 1.74555 1.18329 1.17414 0.98977 1.85266 1.47987 1.37913 1.27582 1.30995 0.94665 0.80969 0.99968 1.20803 0.92106 1.02794 0.77498 0.85887 1.58866 1.27521 1.07586 1.40589 1.21637 0.90704 0.99110 1.01741 1.19480 0.94581 0.97012 0.93017 1.21143 0.98565 1.32344 1.03934 0.91264 1.25013 0.94879 0.95102 0.98509 1.69925 1.06893 1.43460 1.34205 0.86734 0.77474 0.81005 0.83799 1.20255 1.21693 1.18800 1.71926 1.17005 1.29720 1.03095 1.20555 0.96040 0.96118 0.93567 1.22117 1.01148 0.94974 1.02716 1.21875 0.93992 1.02155 1.01863 1.21905 1.01176 1.00228 0.96439 0.92504 0.90900 0.91523 0.84637 0.83511 0.91856 0.91729 0.96621 0.95052 0.92806 0.90903 0.92745 0.92389 0.92238 0.92227 0.93106 0.92127 0.92370 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.47 37.16 0.31 -0.99 16 2 C 0.01 0.10 2.23 -91.77 -0.20 -0.11 16 3 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 4 C 0.18 2.47 5.29 -156.37 -0.83 1.64 16 5 N -0.38 -5.55 9.54 30.90 0.29 -5.26 16 6 O 0.07 1.01 11.29 18.09 0.20 1.21 16 7 C 0.16 2.33 7.31 -13.05 -0.10 2.24 16 8 C 0.18 2.73 3.29 -68.86 -0.23 2.50 16 9 H 0.12 1.82 8.14 -51.93 -0.42 1.40 16 10 N -0.82 -10.70 8.68 -5.65 -0.05 -10.75 16 11 C -0.09 -1.74 4.78 -26.73 -0.13 -1.87 16 12 C 0.00 -0.08 3.93 -27.88 -0.11 -0.19 16 13 C -0.52 -14.71 9.66 -34.44 -0.33 -15.04 16 14 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 15 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 16 N -0.91 -28.00 13.96 55.43 0.77 -27.23 16 17 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 20 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 21 N -0.48 -7.40 11.55 -9.87 -0.11 -7.52 16 22 C -0.06 -0.60 0.57 -154.51 -0.09 -0.69 16 23 C -0.15 -1.58 7.72 37.16 0.29 -1.29 16 24 C -0.14 -1.56 8.23 37.15 0.31 -1.26 16 25 C -0.14 -1.04 8.12 37.16 0.30 -0.74 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.49 6.43 -51.93 -0.33 0.16 16 28 H 0.07 0.63 6.43 -51.93 -0.33 0.29 16 29 H 0.34 3.62 9.06 -39.29 -0.36 3.27 16 30 H 0.35 4.29 8.98 -39.29 -0.35 3.94 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 34 H 0.03 0.72 7.18 -51.93 -0.37 0.34 16 35 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 36 H 0.07 0.93 5.52 -51.93 -0.29 0.64 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.55 6.43 -51.93 -0.33 0.21 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.69 7.22 -51.93 -0.37 0.32 16 42 H 0.06 0.39 6.43 -51.93 -0.33 0.06 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 346.90 15.07 5.23 5.23 Total: -1.00 -31.34 346.90 -6.50 -37.84 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -7.27 Total: 3.40 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -0.90 Total: -13.98 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 0.91 Total: -50.76 kcal Atomic # 8 Polarization: 1.01 SS G_CDS: 0.20 Total: 1.21 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.34 -6.50 -37.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822827880.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.354 kcal (2) G-P(sol) polarization free energy of solvation -31.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds