Wall clock time and date at job start Tue Mar 31 2020 05:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 5 5 N 1.29944 * 126.28817 * 300.02210 * 4 2 1 6 6 O 1.21303 * 110.25321 * 179.97438 * 5 4 2 7 7 C 1.33641 * 109.80947 * 0.02562 * 6 5 4 8 8 C 1.50703 * 126.55277 * 179.97438 * 7 6 5 9 9 H 1.08993 * 109.47261 * 194.96875 * 8 7 6 10 10 N 1.46905 * 109.46672 * 314.97118 * 8 7 6 11 11 C 1.53003 * 109.47172 * 74.96825 * 8 7 6 12 12 C 1.53000 * 109.46957 * 175.00073 * 11 8 7 13 13 C 1.50699 * 109.47095 * 179.97438 * 12 11 8 14 14 H 1.08008 * 119.99896 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00366 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99594 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00456 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.46871 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46792 * 119.99651 * 17 15 13 20 20 H 1.48493 * 109.47402 * 240.00144 * 17 15 13 21 21 N 1.31127 * 106.89985 * 359.75974 * 7 6 5 22 22 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 23 23 C 1.52997 * 109.47164 * 59.99836 * 22 2 1 24 24 C 1.52997 * 109.47127 * 179.97438 * 22 2 1 25 25 C 1.53002 * 109.46977 * 299.99541 * 22 2 1 26 26 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.00898 * 111.00188 * 296.04553 * 10 8 7 30 30 H 1.00896 * 111.00143 * 60.00534 * 10 8 7 31 31 H 1.09000 * 109.47238 * 295.00090 * 11 8 7 32 32 H 1.08997 * 109.46920 * 55.00118 * 11 8 7 33 33 H 1.08997 * 109.47582 * 300.00324 * 12 11 8 34 34 H 1.09009 * 109.46774 * 60.00666 * 12 11 8 35 35 H 0.97005 * 119.99679 * 180.02562 * 16 15 13 36 36 H 1.09001 * 109.47375 * 59.99966 * 23 22 2 37 37 H 1.09002 * 109.47045 * 180.02562 * 23 22 2 38 38 H 1.09000 * 109.47140 * 299.99948 * 23 22 2 39 39 H 1.09004 * 109.47261 * 59.99697 * 24 22 2 40 40 H 1.09002 * 109.47153 * 179.97438 * 24 22 2 41 41 H 1.09001 * 109.47289 * 299.99953 * 24 22 2 42 42 H 1.09004 * 109.46733 * 59.99806 * 25 22 2 43 43 H 1.08992 * 109.47063 * 180.02562 * 25 22 2 44 44 H 1.08996 * 109.47407 * 300.00489 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 7 1.7946 -1.9457 -1.5562 6 8 2.3408 -2.2160 -2.6050 7 6 2.9993 -1.1464 -3.0615 8 6 3.8066 -1.0640 -4.3314 9 1 4.4326 -0.1721 -4.3067 10 7 4.6570 -2.2561 -4.4492 11 6 2.8617 -0.9909 -5.5325 12 6 3.6766 -0.7819 -6.8105 13 6 2.7460 -0.7105 -7.9936 14 1 1.6799 -0.8043 -7.8486 15 6 3.2556 -0.5254 -9.2613 16 7 4.5539 -0.4117 -9.4380 17 14 2.1021 -0.4376 -10.7281 18 1 0.6998 -0.5928 -10.2649 19 1 2.2577 0.8764 -11.4022 20 1 2.4318 -1.5260 -11.6830 21 7 2.8050 -0.1810 -2.1957 22 6 2.0400 -0.7213 1.2493 23 6 1.5300 -2.1638 1.2493 24 6 3.5700 -0.7219 1.2489 25 6 1.5301 0.0000 2.4985 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 5.3337 -2.2928 -3.7016 30 1 4.0997 -3.0968 -4.4742 31 1 2.2983 -1.9209 -5.6088 32 1 2.1714 -0.1576 -5.4015 33 1 4.2400 0.1480 -6.7342 34 1 4.3670 -1.6153 -6.9415 35 1 4.9123 -0.2811 -10.3299 36 1 1.8933 -2.6776 0.3593 37 1 1.8930 -2.6775 2.1395 38 1 0.4400 -2.1638 1.2493 39 1 3.9337 0.3057 1.2487 40 1 3.9333 -1.2353 2.1392 41 1 3.9330 -1.2360 0.3590 42 1 0.4400 0.0001 2.4985 43 1 1.8937 -0.5135 3.3884 44 1 1.8934 1.0276 2.4985 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822827882.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:46 Heat of formation + Delta-G solvation = 38.462253 kcal Electronic energy + Delta-G solvation = -22534.754925 eV Core-core repulsion = 19296.474226 eV Total energy + Delta-G solvation = -3238.280699 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.46111 -38.95952 -36.69843 -35.28474 -33.10248 -32.00321 -30.71895 -30.26281 -27.74543 -27.55672 -26.47872 -24.93482 -24.10269 -23.01424 -21.34172 -20.13768 -18.59209 -17.92115 -17.33715 -16.30678 -15.96002 -15.61113 -15.11416 -14.93918 -14.51218 -14.34349 -14.06614 -14.02936 -13.02379 -12.69620 -12.49090 -12.46045 -12.34198 -12.13858 -12.04109 -11.99717 -11.73918 -11.58118 -11.48191 -11.07963 -10.93202 -10.91721 -10.87652 -10.72643 -10.56881 -10.52974 -9.92551 -9.80585 -9.35085 -9.01347 -8.81337 -8.28448 -5.95368 -3.97420 1.26291 2.33465 2.96261 3.33884 3.41477 3.45387 3.59055 4.04875 4.42057 4.48417 4.51183 4.64569 4.73175 4.90583 5.05152 5.10403 5.24641 5.35125 5.40340 5.41999 5.43875 5.44362 5.53606 5.65059 5.66933 5.67341 5.72234 5.80085 5.86060 5.89437 5.97244 6.06075 6.17528 6.25284 6.41209 6.57523 7.00868 7.17261 7.51684 7.74778 7.92273 8.08983 8.29848 8.45787 9.10110 9.65962 11.15606 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034446 B = 0.003195 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.673562 B = 8761.996719 C = 9093.209565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.009 3.991 3 H 0.099 0.901 4 C 0.178 3.822 5 N -0.385 5.385 6 O 0.066 5.934 7 C 0.159 3.841 8 C 0.186 3.814 9 H 0.123 0.877 10 N -0.813 5.813 11 C -0.101 4.101 12 C 0.032 3.968 13 C -0.522 4.522 14 H 0.053 0.947 15 C 0.058 3.942 16 N -0.892 5.892 17 Si 0.889 3.111 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.284 1.284 21 N -0.486 5.486 22 C -0.062 4.062 23 C -0.152 4.152 24 C -0.139 4.139 25 C -0.141 4.141 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.339 0.661 30 H 0.349 0.651 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.016 0.984 34 H 0.037 0.963 35 H 0.259 0.741 36 H 0.072 0.928 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.047 0.953 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.039 -1.272 23.127 23.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.011 4.011 3 H 0.117 0.883 4 C -0.095 4.095 5 N -0.095 5.095 6 O 0.011 5.989 7 C -0.064 4.064 8 C 0.070 3.930 9 H 0.141 0.859 10 N -0.341 5.341 11 C -0.140 4.140 12 C -0.006 4.006 13 C -0.560 4.560 14 H 0.071 0.929 15 C -0.143 4.143 16 N -0.531 5.531 17 Si 0.717 3.283 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.210 1.210 21 N -0.219 5.219 22 C -0.062 4.062 23 C -0.210 4.210 24 C -0.197 4.197 25 C -0.198 4.198 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.152 0.848 30 H 0.163 0.837 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.034 0.966 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.104 -1.085 22.918 23.308 hybrid contribution -0.924 -0.178 -0.115 0.948 sum -5.027 -1.262 22.802 23.384 Atomic orbital electron populations 1.21960 0.93095 1.03098 1.02584 1.19648 0.96222 0.98616 0.86576 0.88309 1.25683 0.96760 0.88688 0.98340 1.74537 1.17999 1.17808 0.99162 1.85261 1.47776 1.38329 1.27505 1.31157 0.94379 0.81276 0.99607 1.20819 0.91816 0.96425 0.83892 0.85895 1.58818 1.18825 1.04541 1.51914 1.21833 0.97071 1.01239 0.93852 1.19023 0.94988 0.98034 0.88518 1.21284 0.93320 1.49500 0.91932 0.92876 1.24985 0.94965 0.95470 0.98896 1.69985 1.11103 1.49944 1.22092 0.86586 0.81189 0.77565 0.82945 1.19849 1.21084 1.21034 1.71936 1.17740 1.29188 1.03033 1.20549 0.95835 0.96164 0.93698 1.22118 1.01357 0.94940 1.02542 1.21858 0.94270 1.02027 1.01508 1.21905 1.01340 1.00200 0.96339 0.92253 0.90942 0.91527 0.84785 0.83732 0.92460 0.92382 0.96585 0.94458 0.93116 0.90888 0.92886 0.92289 0.92268 0.92374 0.93352 0.92029 0.92284 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 8.47 37.16 0.31 -1.13 16 2 C 0.01 0.10 2.23 -91.77 -0.20 -0.10 16 3 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 4 C 0.18 2.53 5.30 -156.37 -0.83 1.70 16 5 N -0.38 -5.72 9.53 30.90 0.29 -5.43 16 6 O 0.07 1.02 11.29 18.11 0.20 1.22 16 7 C 0.16 2.46 7.31 -13.06 -0.10 2.37 16 8 C 0.19 2.97 3.29 -68.86 -0.23 2.74 16 9 H 0.12 1.99 8.14 -51.93 -0.42 1.57 16 10 N -0.81 -11.66 8.67 -5.65 -0.05 -11.71 16 11 C -0.10 -1.99 4.78 -26.73 -0.13 -2.11 16 12 C 0.03 0.78 4.86 -27.88 -0.14 0.65 16 13 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 14 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 17 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 21 N -0.49 -7.70 11.55 -9.87 -0.11 -7.81 16 22 C -0.06 -0.57 0.57 -154.51 -0.09 -0.66 16 23 C -0.15 -1.51 7.72 37.16 0.29 -1.22 16 24 C -0.14 -1.36 8.23 37.16 0.31 -1.06 16 25 C -0.14 -1.00 8.12 37.16 0.30 -0.70 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.53 6.43 -51.93 -0.33 0.20 16 28 H 0.07 0.68 6.43 -51.93 -0.33 0.35 16 29 H 0.34 4.02 9.06 -39.29 -0.36 3.66 16 30 H 0.35 4.66 8.98 -39.29 -0.35 4.30 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.04 0.98 7.75 -51.92 -0.40 0.58 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.07 0.88 5.51 -51.93 -0.29 0.60 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.56 6.43 -51.93 -0.33 0.22 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.05 0.57 7.22 -51.93 -0.37 0.20 16 42 H 0.06 0.40 6.43 -51.93 -0.33 0.06 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 350.48 15.07 5.28 5.28 Total: -1.00 -30.60 350.48 -6.88 -37.47 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -7.30 Total: 3.12 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -0.91 Total: -12.87 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: 0.87 Total: -50.83 kcal Atomic # 8 Polarization: 1.02 SS G_CDS: 0.20 Total: 1.22 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.60 -6.88 -37.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822827882.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.934 kcal (2) G-P(sol) polarization free energy of solvation -30.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds