Wall clock time and date at job start Tue Mar 31 2020 05:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47023 * 2 1 4 4 C 1.52994 * 109.47212 * 120.00125 * 2 1 3 5 5 C 1.50703 * 109.47210 * 183.62311 * 4 2 1 6 6 H 1.07993 * 120.00182 * 5.00385 * 5 4 2 7 7 C 1.37880 * 120.00025 * 185.00027 * 5 4 2 8 8 N 1.31515 * 120.00017 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00055 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47002 * 60.00122 * 9 7 5 11 11 H 1.48497 * 109.46891 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46902 * 300.00130 * 9 7 5 13 13 N 1.46899 * 109.46892 * 240.00242 * 2 1 3 14 14 C 1.46850 * 111.00000 * 308.26036 * 13 2 1 15 15 C 1.53141 * 109.45373 * 186.34070 * 14 13 2 16 16 C 1.52566 * 109.31330 * 301.70122 * 15 14 13 17 17 C 1.53639 * 110.30616 * 178.55213 * 16 15 14 18 18 N 1.47189 * 103.66687 * 118.85816 * 17 16 15 19 19 C 1.34028 * 109.14895 * 359.97438 * 18 17 16 20 20 O 1.21586 * 123.06583 * 179.97438 * 19 18 17 21 21 N 1.34120 * 113.87584 * 0.02562 * 19 18 17 22 22 C 1.46500 * 125.51797 * 179.97438 * 21 19 18 23 23 C 1.52564 * 110.45016 * 56.35654 * 16 15 14 24 24 C 1.46848 * 110.99903 * 72.61635 * 13 2 1 25 25 H 1.08998 * 109.47345 * 59.99534 * 1 2 3 26 26 H 1.08994 * 109.47090 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46814 * 300.00147 * 1 2 3 28 28 H 1.09000 * 109.47532 * 303.62096 * 4 2 1 29 29 H 1.09002 * 109.47443 * 63.61792 * 4 2 1 30 30 H 0.96998 * 120.00157 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.47377 * 66.34665 * 14 13 2 32 32 H 1.09003 * 109.47704 * 306.33571 * 14 13 2 33 33 H 1.08996 * 109.49974 * 181.74828 * 15 14 13 34 34 H 1.08996 * 109.50063 * 61.64803 * 15 14 13 35 35 H 1.08995 * 110.58750 * 237.40021 * 17 16 15 36 36 H 1.08999 * 110.58233 * 0.31668 * 17 16 15 37 37 H 0.96997 * 125.42600 * 180.02562 * 18 17 16 38 38 H 1.08995 * 109.46897 * 180.51746 * 22 21 19 39 39 H 1.09004 * 109.46887 * 300.51573 * 22 21 19 40 40 H 1.08998 * 109.46858 * 60.51453 * 22 21 19 41 41 H 1.09004 * 109.49771 * 63.59457 * 23 16 15 42 42 H 1.08995 * 109.50463 * 183.69759 * 23 16 15 43 43 H 1.08998 * 109.47364 * 293.65758 * 24 13 2 44 44 H 1.09002 * 109.47559 * 53.67278 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5444 -0.6440 1.2949 6 1 4.0780 -0.0639 0.5566 7 6 4.2395 -1.3138 2.2794 8 7 3.5898 -2.0206 3.1782 9 14 6.1043 -1.2186 2.3356 10 1 6.5229 0.1965 2.5005 11 1 6.6065 -2.0205 3.4801 12 1 6.6657 -1.7567 1.0705 13 7 2.0197 -0.6924 -1.1995 14 6 1.3946 -2.0143 -1.3360 15 6 2.0425 -2.7668 -2.5019 16 6 1.8796 -1.9517 -3.7813 17 6 2.5538 -2.6697 -4.9604 18 7 1.4447 -2.9206 -5.8950 19 6 0.3095 -2.4396 -5.3693 20 8 -0.7654 -2.5119 -5.9330 21 7 0.4674 -1.8701 -4.1653 22 6 -0.5989 -1.2644 -3.3639 23 6 2.4705 -0.5565 -3.6033 24 6 1.8089 0.1243 -2.4015 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6247 -0.2463 2.1380 29 1 1.7307 -1.7659 1.2174 30 1 4.0788 -2.4916 3.8710 31 1 0.3286 -1.8940 -1.5287 32 1 1.5359 -2.5800 -0.4151 33 1 1.5581 -3.7356 -2.6236 34 1 3.1028 -2.9129 -2.2963 35 1 3.3051 -2.0282 -5.4208 36 1 2.9990 -3.6092 -4.6330 37 1 1.5227 -3.3642 -6.7540 38 1 -0.1793 -0.8732 -2.4372 39 1 -1.0588 -0.4516 -3.9261 40 1 -1.3520 -2.0176 -3.1324 41 1 3.5440 -0.6353 -3.4312 42 1 2.2879 0.0334 -4.5015 43 1 0.7399 0.2294 -2.5865 44 1 2.2508 1.1097 -2.2534 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823649745.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:33 Heat of formation + Delta-G solvation = 11.025455 kcal Electronic energy + Delta-G solvation = -24111.880308 eV Core-core repulsion = 20872.409860 eV Total energy + Delta-G solvation = -3239.470448 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.67750 -38.83208 -36.54738 -34.48245 -33.22632 -32.26936 -30.81759 -29.91957 -27.54071 -27.13828 -26.06771 -23.32258 -23.16204 -21.91145 -20.96410 -20.08159 -18.94982 -17.02656 -16.24662 -16.17006 -15.83267 -15.66533 -14.84851 -14.64734 -14.33560 -14.08478 -14.03693 -13.71829 -13.49865 -12.92899 -12.88561 -12.54901 -12.44643 -12.36432 -11.88607 -11.83246 -11.52796 -11.14347 -11.01456 -10.86132 -10.65516 -10.61015 -10.45123 -10.25541 -9.96938 -9.95414 -9.31577 -9.19654 -9.00460 -8.51859 -8.28077 -7.45604 -5.91167 -3.88903 2.61406 3.15780 3.37941 3.42571 3.45120 3.82860 4.23403 4.44726 4.53969 4.64986 4.77271 4.98078 5.28630 5.30579 5.35627 5.44739 5.45988 5.51330 5.56383 5.63917 5.69414 5.76167 5.82613 5.84717 5.91551 5.99982 6.04859 6.13132 6.19552 6.32881 6.41791 6.51452 6.64287 6.75429 6.93270 7.04642 7.48269 7.51617 7.62282 7.85415 7.96956 8.09181 8.54559 8.60595 9.16051 9.72551 11.20744 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024568 B = 0.005065 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.413711 B = 5526.501872 C = 6096.948904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.087 3.913 3 H 0.069 0.931 4 C 0.031 3.969 5 C -0.488 4.488 6 H 0.059 0.941 7 C 0.052 3.948 8 N -0.904 5.904 9 Si 0.889 3.111 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.507 5.507 14 C 0.043 3.957 15 C -0.115 4.115 16 C 0.149 3.851 17 C 0.101 3.899 18 N -0.744 5.744 19 C 0.698 3.302 20 O -0.596 6.596 21 N -0.618 5.618 22 C 0.096 3.904 23 C -0.113 4.113 24 C 0.038 3.962 25 H 0.039 0.961 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.015 0.985 29 H 0.022 0.978 30 H 0.258 0.742 31 H 0.039 0.961 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.426 0.574 38 H 0.109 0.891 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.088 0.912 42 H 0.065 0.935 43 H 0.039 0.961 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.907 0.485 -14.216 14.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.021 4.021 3 H 0.088 0.912 4 C -0.006 4.006 5 C -0.527 4.527 6 H 0.077 0.923 7 C -0.148 4.148 8 N -0.545 5.545 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.231 5.231 14 C -0.085 4.085 15 C -0.154 4.154 16 C 0.064 3.936 17 C -0.024 4.024 18 N -0.406 5.406 19 C 0.398 3.602 20 O -0.475 6.475 21 N -0.356 5.356 22 C -0.045 4.045 23 C -0.152 4.152 24 C -0.090 4.090 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.033 0.967 29 H 0.040 0.960 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.266 0.734 38 H 0.127 0.873 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.107 0.893 42 H 0.084 0.916 43 H 0.057 0.943 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.039 0.357 -14.166 14.493 hybrid contribution 0.361 -0.110 -0.297 0.480 sum -2.678 0.247 -14.464 14.712 Atomic orbital electron populations 1.22603 0.99857 1.01373 1.00811 1.21926 0.89924 0.98301 0.91924 0.91246 1.19183 0.96375 0.95480 0.89592 1.21080 0.91504 1.29019 1.11057 0.92322 1.24986 0.97914 0.95876 0.96010 1.69947 1.35251 1.32916 1.16375 0.86709 0.86497 0.77795 0.77207 1.20573 1.21732 1.20410 1.62013 1.58064 1.01866 1.01167 1.22359 0.95620 0.91520 0.98996 1.21886 1.03296 0.97519 0.92650 1.21037 0.80809 0.96819 0.94983 1.22478 0.90238 1.00845 0.88887 1.45150 1.08054 1.64583 1.22800 1.15980 0.84118 0.78524 0.81529 1.90927 1.26673 1.64878 1.65046 1.47031 1.08493 1.61267 1.18762 1.22143 0.88788 0.97592 0.95944 1.21855 1.01537 0.93701 0.98098 1.22376 0.98492 0.97419 0.90746 0.94216 0.92721 0.92295 0.96731 0.95956 0.93276 0.94350 0.89058 0.91549 0.89161 0.89863 0.89714 0.73355 0.87294 0.92553 0.92436 0.89330 0.91637 0.94335 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.90 7.88 37.16 0.29 -2.61 16 2 C 0.09 1.61 2.26 -67.71 -0.15 1.45 16 3 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 4 C 0.03 0.73 4.39 -27.88 -0.12 0.61 16 5 C -0.49 -12.93 8.80 -34.44 -0.30 -13.24 16 6 H 0.06 1.55 7.75 -52.49 -0.41 1.14 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.33 16 8 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 9 Si 0.89 21.26 29.54 -169.99 -5.02 16.23 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.51 -8.43 4.25 -226.55 -0.96 -9.39 16 14 C 0.04 0.66 4.17 -3.78 -0.02 0.65 16 15 C -0.11 -1.52 4.90 -26.88 -0.13 -1.65 16 16 C 0.15 1.76 0.87 -131.89 -0.12 1.64 16 17 C 0.10 0.95 7.34 -3.33 -0.02 0.92 16 18 N -0.74 -8.14 6.39 -64.79 -0.41 -8.55 16 19 C 0.70 10.35 8.61 -88.17 -0.76 9.59 16 20 O -0.60 -11.14 17.70 5.29 0.09 -11.05 16 21 N -0.62 -8.27 2.81 -172.81 -0.49 -8.75 16 22 C 0.10 1.24 8.34 59.85 0.50 1.74 16 23 C -0.11 -1.33 4.90 -26.88 -0.13 -1.46 16 24 C 0.04 0.51 4.87 -3.77 -0.02 0.49 16 25 H 0.04 0.53 6.38 -51.93 -0.33 0.20 16 26 H 0.05 0.84 6.46 -51.93 -0.34 0.51 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.02 0.57 6.36 -51.93 -0.33 0.24 16 30 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.04 0.56 3.19 -51.93 -0.17 0.40 16 32 H 0.09 1.70 6.24 -51.93 -0.32 1.37 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.08 0.64 7.71 -51.93 -0.40 0.24 16 36 H 0.08 0.69 7.71 -51.93 -0.40 0.29 16 37 H 0.43 3.72 8.96 -40.82 -0.37 3.36 16 38 H 0.11 1.38 1.32 -51.93 -0.07 1.32 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.04 0.51 3.60 -51.93 -0.19 0.32 16 44 H 0.07 1.00 7.98 -51.93 -0.41 0.59 16 LS Contribution 323.10 15.07 4.87 4.87 Total: -1.00 -31.90 323.10 -8.92 -40.83 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -6.66 Total: 1.96 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -1.08 Total: -0.52 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -1.12 Total: -52.32 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.05 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.90 -8.92 -40.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823649745.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.851 kcal (2) G-P(sol) polarization free energy of solvation -31.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds