Wall clock time and date at job start Tue Mar 31 2020 05:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50697 * 120.00336 * 2 1 4 4 N 1.46499 * 109.47298 * 124.99911 * 3 2 1 5 5 C 1.47057 * 125.40722 * 90.00404 * 4 3 2 6 6 C 1.54113 * 103.86229 * 180.02562 * 5 4 3 7 7 N 1.47060 * 103.98793 * 359.92441 * 6 5 4 8 8 C 1.46495 * 125.40886 * 180.02562 * 7 6 5 9 9 N 1.46905 * 109.47303 * 82.37331 * 8 7 6 10 10 C 1.46900 * 111.00399 * 207.72175 * 9 8 7 11 11 C 1.50696 * 109.47008 * 163.30114 * 10 9 8 12 12 H 1.08003 * 119.99921 * 357.61487 * 11 10 9 13 13 C 1.37872 * 119.99852 * 177.61707 * 11 10 9 14 14 N 1.31512 * 120.00089 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00057 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47269 * 59.99768 * 15 13 11 17 17 H 1.48501 * 109.47468 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.47203 * 299.99870 * 15 13 11 19 19 C 1.46900 * 110.99807 * 83.76269 * 9 8 7 20 20 C 1.53004 * 109.46920 * 70.95136 * 19 9 8 21 21 C 1.52999 * 109.47515 * 190.94845 * 19 9 8 22 22 C 1.33953 * 125.41423 * 270.00241 * 4 3 2 23 23 O 1.21587 * 123.03609 * 359.97438 * 22 4 3 24 24 H 1.08006 * 119.99957 * 179.97438 * 1 2 3 25 25 H 1.07998 * 119.99839 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.00248 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47053 * 5.00633 * 3 2 1 28 28 H 1.09000 * 109.47791 * 245.00222 * 3 2 1 29 29 H 1.08997 * 110.54816 * 61.40629 * 5 4 3 30 30 H 1.08994 * 110.67132 * 298.65087 * 5 4 3 31 31 H 1.08990 * 110.55019 * 118.59356 * 6 5 4 32 32 H 1.09002 * 110.54852 * 241.26248 * 6 5 4 33 33 H 1.08999 * 109.47378 * 202.37306 * 8 7 6 34 34 H 1.08999 * 109.47177 * 322.37570 * 8 7 6 35 35 H 1.08992 * 109.46556 * 283.29939 * 10 9 8 36 36 H 1.08998 * 109.46905 * 43.30137 * 10 9 8 37 37 H 0.97004 * 120.00192 * 179.97438 * 14 13 11 38 38 H 1.09005 * 109.47336 * 310.95610 * 19 9 8 39 39 H 1.09001 * 109.47227 * 68.25799 * 20 19 9 40 40 H 1.09003 * 109.47470 * 188.26653 * 20 19 9 41 41 H 1.09007 * 109.46697 * 308.26347 * 20 19 9 42 42 H 1.09006 * 109.46768 * 51.76427 * 21 19 9 43 43 H 1.09002 * 109.47183 * 171.76574 * 21 19 9 44 44 H 1.08996 * 109.47017 * 291.77296 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.3851 0.8565 1.1019 6 6 4.8936 1.1139 2.5338 7 7 3.7371 1.7089 3.2202 8 6 3.7097 2.1379 4.6206 9 7 4.2966 3.4799 4.7333 10 6 4.8870 3.6865 6.0624 11 6 5.8180 4.8707 6.0199 12 1 5.9869 5.3918 5.0890 13 6 6.4543 5.2890 7.1693 14 7 6.2484 4.6548 8.3028 15 14 7.6089 6.7565 7.1165 16 1 6.8628 7.9574 6.6622 17 1 8.1609 7.0012 8.4732 18 1 8.7207 6.4779 6.1721 19 6 3.3005 4.5170 4.4326 20 6 2.2787 4.5874 5.5692 21 6 4.0000 5.8704 4.2913 22 6 2.7122 1.7932 2.3571 23 8 1.6265 2.2486 2.6607 24 1 -0.5400 -0.9354 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1316 0.0897 28 1 2.6213 1.4026 -0.9314 29 1 4.9691 1.4270 0.3798 30 1 4.4233 -0.2074 0.8683 31 1 5.1820 0.1776 3.0115 32 1 5.7318 1.8106 2.5227 33 1 2.6786 2.1616 4.9733 34 1 4.2849 1.4378 5.2265 35 1 4.0945 3.8733 6.7869 36 1 5.4443 2.7965 6.3547 37 1 6.6963 4.9489 9.1114 38 1 2.7910 4.2722 3.5006 39 1 2.7604 4.9736 6.4675 40 1 1.4610 5.2487 5.2824 41 1 1.8866 3.5898 5.7675 42 1 4.8255 5.7806 3.5851 43 1 3.2883 6.6108 3.9261 44 1 4.3847 6.1837 5.2618 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839977211.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:02 Heat of formation + Delta-G solvation = 32.247253 kcal Electronic energy + Delta-G solvation = -23299.679196 eV Core-core repulsion = 20061.128995 eV Total energy + Delta-G solvation = -3238.550202 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.76142 -37.69227 -36.02365 -35.47793 -33.00400 -32.44298 -30.51540 -28.96086 -27.50957 -26.50383 -25.99166 -24.13806 -22.52216 -22.13898 -20.23712 -19.48756 -18.59318 -16.92507 -16.52166 -16.34297 -16.00547 -15.05480 -14.94517 -14.58034 -14.31338 -13.91570 -13.80544 -13.56239 -13.33629 -13.07544 -12.49545 -12.23830 -12.16676 -12.07878 -11.73886 -11.43055 -11.39890 -11.23152 -11.09434 -10.78806 -10.67346 -10.63012 -10.25486 -10.12210 -9.91054 -9.57500 -9.47576 -8.98506 -8.80638 -8.38424 -8.21357 -7.22574 -6.00614 -3.97733 1.97000 2.79812 3.33679 3.38322 3.40702 3.45669 3.99090 4.44166 4.58369 4.70465 4.83744 4.98876 5.06341 5.12095 5.33263 5.33671 5.50910 5.58959 5.69822 5.75850 5.87526 5.94301 5.96524 6.03706 6.18403 6.26059 6.42099 6.49299 6.52519 6.66922 6.68568 6.82794 6.90762 7.05764 7.09761 7.21817 7.46255 7.52771 7.84461 7.88086 8.13719 8.25295 8.56120 8.88711 9.06611 9.62214 11.09739 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029770 B = 0.004179 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.309338 B = 6698.118762 C = 6958.313336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.178 4.178 3 C 0.180 3.820 4 N -0.637 5.637 5 C 0.096 3.904 6 C 0.096 3.904 7 N -0.615 5.615 8 C 0.306 3.694 9 N -0.547 5.547 10 C 0.190 3.810 11 C -0.501 4.501 12 H 0.074 0.926 13 C 0.053 3.947 14 N -0.900 5.900 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.277 1.277 19 C 0.095 3.905 20 C -0.176 4.176 21 C -0.143 4.143 22 C 0.700 3.300 23 O -0.587 6.587 24 H 0.097 0.903 25 H 0.099 0.901 26 H 0.107 0.893 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.009 0.991 36 H 0.024 0.976 37 H 0.261 0.739 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.044 0.956 41 H 0.043 0.957 42 H 0.049 0.951 43 H 0.026 0.974 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.180 -9.105 -15.139 18.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.198 4.198 3 C 0.058 3.942 4 N -0.375 5.375 5 C -0.028 4.028 6 C -0.028 4.028 7 N -0.354 5.354 8 C 0.095 3.905 9 N -0.273 5.273 10 C 0.065 3.935 11 C -0.540 4.540 12 H 0.092 0.908 13 C -0.148 4.148 14 N -0.540 5.540 15 Si 0.721 3.279 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.203 1.203 19 C -0.013 4.013 20 C -0.235 4.235 21 C -0.200 4.200 22 C 0.401 3.599 23 O -0.465 6.465 24 H 0.115 0.885 25 H 0.117 0.883 26 H 0.125 0.875 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.027 0.973 36 H 0.042 0.958 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.045 0.955 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.378 -8.767 -15.059 18.236 hybrid contribution 0.221 0.522 0.596 0.822 sum -5.157 -8.245 -14.463 17.428 Atomic orbital electron populations 1.23875 0.95897 1.02008 0.99002 1.23323 0.96376 0.98934 1.01131 1.20202 0.91213 0.95726 0.87057 1.47160 1.12825 1.66803 1.10705 1.22347 0.82670 1.00045 0.97721 1.22264 0.91167 0.99152 0.90180 1.47549 1.11689 1.64321 1.11815 1.21667 0.99340 0.91865 0.77642 1.62016 1.31397 0.99979 1.33913 1.19811 0.93943 0.97379 0.82317 1.21379 1.24497 1.13000 0.95105 0.90792 1.24973 0.97029 0.97217 0.95544 1.69944 1.43768 1.40792 0.99489 0.86643 0.81280 0.83105 0.76889 1.20251 1.21508 1.20293 1.21395 0.90677 0.92799 0.96456 1.22379 0.99279 1.00596 1.01245 1.22236 0.98770 0.94554 1.04486 1.15981 0.84463 0.78569 0.80837 1.90889 1.23905 1.52505 1.79203 0.88500 0.88257 0.87495 0.89594 0.89788 0.90443 0.90769 0.90644 0.89456 0.91998 0.89883 0.97320 0.95836 0.92985 0.92045 0.91138 0.93656 0.93766 0.93146 0.95505 0.88628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 14.32 29.02 0.42 -1.23 16 2 C -0.18 -1.78 9.85 -36.03 -0.35 -2.14 16 3 C 0.18 1.94 6.43 -5.20 -0.03 1.91 16 4 N -0.64 -8.44 2.94 -180.09 -0.53 -8.97 16 5 C 0.10 0.96 7.68 -3.16 -0.02 0.94 16 6 C 0.10 1.20 7.67 -3.16 -0.02 1.17 16 7 N -0.62 -10.28 3.20 -182.22 -0.58 -10.86 16 8 C 0.31 5.76 5.75 -63.32 -0.36 5.39 16 9 N -0.55 -11.67 4.59 -231.97 -1.06 -12.73 16 10 C 0.19 4.70 4.45 -4.98 -0.02 4.68 16 11 C -0.50 -13.31 6.69 -34.44 -0.23 -13.54 16 12 H 0.07 1.95 5.38 -52.48 -0.28 1.67 16 13 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 14 N -0.90 -25.93 13.29 55.43 0.74 -25.20 16 15 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 C 0.10 2.00 2.89 -67.71 -0.20 1.81 16 20 C -0.18 -3.58 8.29 37.16 0.31 -3.27 16 21 C -0.14 -3.00 7.69 37.16 0.29 -2.71 16 22 C 0.70 12.25 7.78 -88.12 -0.69 11.57 16 23 O -0.59 -12.38 16.09 5.29 0.09 -12.29 16 24 H 0.10 0.80 8.06 -52.48 -0.42 0.37 16 25 H 0.10 0.98 7.84 -52.49 -0.41 0.57 16 26 H 0.11 0.96 8.06 -52.48 -0.42 0.54 16 27 H 0.09 1.05 7.57 -51.93 -0.39 0.66 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 1.24 5.71 -51.93 -0.30 0.94 16 34 H 0.08 1.48 7.49 -51.93 -0.39 1.09 16 35 H 0.01 0.24 5.68 -51.93 -0.30 -0.06 16 36 H 0.02 0.62 7.60 -51.93 -0.39 0.22 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.06 1.35 6.62 -51.93 -0.34 1.00 16 39 H 0.07 1.55 6.50 -51.93 -0.34 1.22 16 40 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.04 0.88 6.32 -51.93 -0.33 0.55 16 42 H 0.05 1.06 7.51 -51.93 -0.39 0.67 16 43 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.10 2.23 5.43 -51.93 -0.28 1.95 16 LS Contribution 346.99 15.07 5.23 5.23 Total: -1.00 -31.67 346.99 -9.25 -40.93 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -7.08 Total: 1.80 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -1.02 Total: 5.93 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: -1.44 Total: -57.76 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.09 Total: -12.29 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.67 -9.25 -40.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839977211.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.173 kcal (2) G-P(sol) polarization free energy of solvation -31.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds