Wall clock time and date at job start Tue Mar 31 2020 05:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50697 * 120.00336 * 2 1 4 4 N 1.46499 * 109.47298 * 124.99911 * 3 2 1 5 5 C 1.47057 * 125.40722 * 90.00404 * 4 3 2 6 6 C 1.54113 * 103.86229 * 180.02562 * 5 4 3 7 7 N 1.47060 * 103.98793 * 359.92441 * 6 5 4 8 8 C 1.46495 * 125.40886 * 180.02562 * 7 6 5 9 9 N 1.46905 * 109.47303 * 82.37331 * 8 7 6 10 10 C 1.46900 * 111.00399 * 207.72175 * 9 8 7 11 11 C 1.50696 * 109.47008 * 163.30114 * 10 9 8 12 12 H 1.08003 * 119.99921 * 357.61487 * 11 10 9 13 13 C 1.37872 * 119.99852 * 177.61707 * 11 10 9 14 14 N 1.31512 * 120.00089 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00057 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47269 * 59.99768 * 15 13 11 17 17 H 1.48501 * 109.47468 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.47203 * 299.99870 * 15 13 11 19 19 C 1.46900 * 110.99807 * 83.76269 * 9 8 7 20 20 C 1.53004 * 109.46920 * 70.95136 * 19 9 8 21 21 C 1.52999 * 109.47515 * 190.94845 * 19 9 8 22 22 C 1.33953 * 125.41423 * 270.00241 * 4 3 2 23 23 O 1.21587 * 123.03609 * 359.97438 * 22 4 3 24 24 H 1.08006 * 119.99957 * 179.97438 * 1 2 3 25 25 H 1.07998 * 119.99839 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.00248 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47053 * 5.00633 * 3 2 1 28 28 H 1.09000 * 109.47791 * 245.00222 * 3 2 1 29 29 H 1.08997 * 110.54816 * 61.40629 * 5 4 3 30 30 H 1.08994 * 110.67132 * 298.65087 * 5 4 3 31 31 H 1.08990 * 110.55019 * 118.59356 * 6 5 4 32 32 H 1.09002 * 110.54852 * 241.26248 * 6 5 4 33 33 H 1.08999 * 109.47378 * 202.37306 * 8 7 6 34 34 H 1.08999 * 109.47177 * 322.37570 * 8 7 6 35 35 H 1.08992 * 109.46556 * 283.29939 * 10 9 8 36 36 H 1.08998 * 109.46905 * 43.30137 * 10 9 8 37 37 H 0.97004 * 120.00192 * 179.97438 * 14 13 11 38 38 H 1.09005 * 109.47336 * 310.95610 * 19 9 8 39 39 H 1.09001 * 109.47227 * 68.25799 * 20 19 9 40 40 H 1.09003 * 109.47470 * 188.26653 * 20 19 9 41 41 H 1.09007 * 109.46697 * 308.26347 * 20 19 9 42 42 H 1.09006 * 109.46768 * 51.76427 * 21 19 9 43 43 H 1.09002 * 109.47183 * 171.76574 * 21 19 9 44 44 H 1.08996 * 109.47017 * 291.77296 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.3851 0.8565 1.1019 6 6 4.8936 1.1139 2.5338 7 7 3.7371 1.7089 3.2202 8 6 3.7097 2.1379 4.6206 9 7 4.2966 3.4799 4.7333 10 6 4.8870 3.6865 6.0624 11 6 5.8180 4.8707 6.0199 12 1 5.9869 5.3918 5.0890 13 6 6.4543 5.2890 7.1693 14 7 6.2484 4.6548 8.3028 15 14 7.6089 6.7565 7.1165 16 1 6.8628 7.9574 6.6622 17 1 8.1609 7.0012 8.4732 18 1 8.7207 6.4779 6.1721 19 6 3.3005 4.5170 4.4326 20 6 2.2787 4.5874 5.5692 21 6 4.0000 5.8704 4.2913 22 6 2.7122 1.7932 2.3571 23 8 1.6265 2.2486 2.6607 24 1 -0.5400 -0.9354 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1316 0.0897 28 1 2.6213 1.4026 -0.9314 29 1 4.9691 1.4270 0.3798 30 1 4.4233 -0.2074 0.8683 31 1 5.1820 0.1776 3.0115 32 1 5.7318 1.8106 2.5227 33 1 2.6786 2.1616 4.9733 34 1 4.2849 1.4378 5.2265 35 1 4.0945 3.8733 6.7869 36 1 5.4443 2.7965 6.3547 37 1 6.6963 4.9489 9.1114 38 1 2.7910 4.2722 3.5006 39 1 2.7604 4.9736 6.4675 40 1 1.4610 5.2487 5.2824 41 1 1.8866 3.5898 5.7675 42 1 4.8255 5.7806 3.5851 43 1 3.2883 6.6108 3.9261 44 1 4.3847 6.1837 5.2618 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839977211.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:01 Heat of formation + Delta-G solvation = 12.290138 kcal Electronic energy + Delta-G solvation = -23300.544602 eV Core-core repulsion = 20061.128995 eV Total energy + Delta-G solvation = -3239.415607 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.96180 -39.37219 -37.32377 -36.50877 -34.68618 -33.92369 -32.07285 -30.23725 -29.19176 -27.91876 -27.41283 -25.57784 -24.08479 -23.56531 -21.24835 -20.56672 -20.27566 -18.58745 -17.84359 -17.69336 -17.24601 -16.66862 -16.56495 -15.90219 -15.51959 -15.26182 -15.14497 -14.80710 -14.65861 -14.37314 -14.16820 -13.98129 -13.33821 -13.26737 -13.06958 -12.94479 -12.85648 -12.63710 -12.55757 -12.53580 -12.34787 -12.15831 -12.06618 -11.89271 -11.38133 -11.24432 -10.93519 -10.46528 -10.38756 -10.09050 -9.37710 -8.97857 -8.09886 -6.13059 1.11833 1.45632 1.46701 1.53980 1.71608 2.16167 2.46418 2.91554 3.22170 3.35887 3.66536 3.83411 3.99942 4.12505 4.16869 4.28389 4.30852 4.38681 4.40716 4.52629 4.63149 4.71753 4.77793 4.82562 4.92511 4.94638 4.99825 5.05230 5.07726 5.16794 5.23428 5.32580 5.51499 5.66186 5.66906 5.70946 5.77032 5.85924 5.93654 6.16097 6.38055 6.64268 6.72187 6.97450 7.50578 7.58920 9.00144 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029770 B = 0.004179 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.309338 B = 6698.118762 C = 6958.313336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.182 4.182 3 C 0.175 3.825 4 N -0.631 5.631 5 C 0.101 3.899 6 C 0.090 3.910 7 N -0.623 5.623 8 C 0.312 3.688 9 N -0.546 5.546 10 C 0.206 3.794 11 C -0.503 4.503 12 H 0.076 0.924 13 C 0.003 3.997 14 N -0.936 5.936 15 Si 0.955 3.045 16 H -0.270 1.270 17 H -0.289 1.289 18 H -0.269 1.269 19 C 0.099 3.901 20 C -0.166 4.166 21 C -0.134 4.134 22 C 0.688 3.312 23 O -0.633 6.633 24 H 0.112 0.888 25 H 0.090 0.910 26 H 0.123 0.877 27 H 0.064 0.936 28 H 0.119 0.881 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.090 0.910 35 H -0.013 1.013 36 H 0.006 0.994 37 H 0.260 0.740 38 H 0.056 0.944 39 H 0.048 0.952 40 H 0.061 0.939 41 H 0.041 0.959 42 H 0.046 0.954 43 H 0.049 0.951 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.296 -9.625 -17.339 20.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.201 4.201 3 C 0.054 3.946 4 N -0.368 5.368 5 C -0.021 4.021 6 C -0.033 4.033 7 N -0.360 5.360 8 C 0.100 3.900 9 N -0.272 5.272 10 C 0.080 3.920 11 C -0.542 4.542 12 H 0.094 0.906 13 C -0.194 4.194 14 N -0.577 5.577 15 Si 0.780 3.220 16 H -0.195 1.195 17 H -0.215 1.215 18 H -0.195 1.195 19 C -0.010 4.010 20 C -0.224 4.224 21 C -0.191 4.191 22 C 0.390 3.610 23 O -0.515 6.515 24 H 0.130 0.870 25 H 0.109 0.891 26 H 0.141 0.859 27 H 0.083 0.917 28 H 0.137 0.863 29 H 0.118 0.882 30 H 0.126 0.874 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.108 0.892 35 H 0.005 0.995 36 H 0.024 0.976 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.469 -9.319 -17.331 20.179 hybrid contribution -0.107 0.629 1.213 1.371 sum -4.577 -8.691 -16.117 18.874 Atomic orbital electron populations 1.24029 0.96195 1.02412 0.98802 1.23392 0.96432 0.99052 1.01243 1.20419 0.91204 0.95553 0.87413 1.47300 1.14413 1.65631 1.09504 1.22602 0.80678 1.02447 0.96389 1.22551 0.89533 0.99559 0.91632 1.47451 1.13202 1.64295 1.11072 1.21482 0.98313 0.90749 0.79479 1.61999 1.32059 1.01391 1.31759 1.19479 0.92971 0.96071 0.83484 1.21638 1.24264 1.13194 0.95090 0.90643 1.25734 0.98642 0.99816 0.95213 1.70069 1.45063 1.42478 1.00097 0.85654 0.79428 0.80022 0.76849 1.19549 1.21532 1.19454 1.21355 0.90615 0.92811 0.96223 1.22251 0.99438 1.00727 1.00034 1.22088 0.99147 0.94957 1.02952 1.16298 0.83905 0.78681 0.82137 1.90842 1.25737 1.54592 1.80308 0.86994 0.89131 0.85894 0.91722 0.86316 0.88152 0.87350 0.88561 0.90195 0.93575 0.89159 0.99538 0.97620 0.93087 0.92532 0.93258 0.91964 0.94008 0.93466 0.93247 0.91062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.20 14.32 67.79 0.97 -2.23 16 2 C -0.18 -3.24 9.85 25.65 0.25 -2.98 16 3 C 0.18 3.41 6.43 85.63 0.55 3.96 16 4 N -0.63 -15.33 2.94 -842.41 -2.48 -17.80 16 5 C 0.10 1.65 7.68 86.65 0.67 2.32 16 6 C 0.09 2.03 7.67 86.65 0.66 2.70 16 7 N -0.62 -20.33 3.20 -848.99 -2.72 -23.05 16 8 C 0.31 11.87 5.75 170.81 0.98 12.85 16 9 N -0.55 -23.53 4.59 -887.82 -4.07 -27.61 16 10 C 0.21 10.42 4.45 85.56 0.38 10.80 16 11 C -0.50 -26.94 6.69 25.60 0.17 -26.77 16 12 H 0.08 3.96 5.38 -2.91 -0.02 3.94 16 13 C 0.00 0.18 5.46 84.65 0.46 0.65 16 14 N -0.94 -54.78 13.29 21.44 0.28 -54.50 16 15 Si 0.95 43.39 29.54 68.60 2.03 45.42 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 17 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 19 C 0.10 4.16 2.89 44.92 0.13 4.29 16 20 C -0.17 -6.85 8.29 71.98 0.60 -6.25 16 21 C -0.13 -5.55 7.69 71.98 0.55 -5.00 16 22 C 0.69 23.62 7.78 179.47 1.40 25.01 16 23 O -0.63 -27.03 16.09 -3.99 -0.06 -27.09 16 24 H 0.11 1.65 8.06 -2.91 -0.02 1.63 16 25 H 0.09 1.77 7.84 -2.91 -0.02 1.75 16 26 H 0.12 1.80 8.06 -2.91 -0.02 1.78 16 27 H 0.06 1.54 7.57 -2.39 -0.02 1.53 16 28 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.05 1.90 5.71 -2.39 -0.01 1.89 16 34 H 0.09 3.26 7.49 -2.39 -0.02 3.24 16 35 H -0.01 -0.72 5.68 -2.39 -0.01 -0.73 16 36 H 0.01 0.31 7.60 -2.39 -0.02 0.29 16 37 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 38 H 0.06 2.48 6.62 -2.38 -0.02 2.47 16 39 H 0.05 2.23 6.50 -2.39 -0.02 2.22 16 40 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.04 1.71 6.32 -2.38 -0.02 1.70 16 42 H 0.05 1.95 7.51 -2.38 -0.02 1.93 16 43 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.07 3.32 5.43 -2.39 -0.01 3.31 16 Total: -1.00 -69.51 346.99 1.73 -67.77 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.97 Total: 17.51 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: 7.78 Total: 19.34 kcal Atomic # 7 Polarization: -113.97 SS G_CDS: -8.98 Total: -122.95 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.06 Total: -27.09 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -69.51 1.73 -67.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839977211.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.065 kcal (2) G-P(sol) polarization free energy of solvation -69.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds