Wall clock time and date at job start Tue Mar 31 2020 06:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50707 * 119.99933 * 2 1 4 4 C 1.52994 * 109.47236 * 295.00312 * 3 2 1 5 5 C 1.52998 * 109.47086 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.46993 * 179.97438 * 5 4 3 7 7 H 1.07993 * 120.00052 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99696 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99664 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 120.00042 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.46640 * 90.00203 * 10 8 6 12 12 H 1.48493 * 109.47009 * 209.99738 * 10 8 6 13 13 H 1.48492 * 109.47252 * 330.00414 * 10 8 6 14 14 N 1.28004 * 120.00198 * 180.02562 * 2 1 3 15 15 N 1.40107 * 120.00082 * 359.97438 * 14 2 1 16 16 C 1.34774 * 120.00170 * 180.02562 * 15 14 2 17 17 O 1.21595 * 119.99807 * 179.97438 * 16 15 14 18 18 N 1.34773 * 119.99940 * 0.02562 * 16 15 14 19 19 C 1.46506 * 119.99969 * 180.02562 * 18 16 15 20 20 C 1.54268 * 110.02813 * 272.63206 * 19 18 16 21 21 C 1.54971 * 104.15564 * 217.13629 * 20 19 18 22 22 C 1.54883 * 102.77798 * 37.88503 * 21 20 19 23 23 C 1.53871 * 110.03427 * 155.40981 * 19 18 16 24 24 H 1.09000 * 109.46964 * 269.99794 * 1 2 3 25 25 H 1.09003 * 109.47060 * 29.99607 * 1 2 3 26 26 H 1.09001 * 109.46926 * 149.99906 * 1 2 3 27 27 H 1.08996 * 109.46713 * 55.00465 * 3 2 1 28 28 H 1.08997 * 109.46990 * 175.00357 * 3 2 1 29 29 H 1.09002 * 109.46943 * 300.00248 * 4 3 2 30 30 H 1.09005 * 109.47369 * 59.99547 * 4 3 2 31 31 H 1.09002 * 109.46913 * 299.99688 * 5 4 3 32 32 H 1.08997 * 109.47107 * 60.00065 * 5 4 3 33 33 H 0.97001 * 119.99440 * 180.02562 * 9 8 6 34 34 H 0.97000 * 119.99293 * 0.02562 * 15 14 2 35 35 H 0.97005 * 120.00161 * 359.72198 * 18 16 15 36 36 H 1.08996 * 110.01294 * 34.01804 * 19 18 16 37 37 H 1.09004 * 110.48773 * 335.77712 * 20 19 18 38 38 H 1.08996 * 110.48996 * 98.42933 * 20 19 18 39 39 H 1.09002 * 110.71525 * 279.57326 * 21 20 19 40 40 H 1.08996 * 110.92520 * 156.29778 * 21 20 19 41 41 H 1.09002 * 110.48973 * 203.40432 * 22 21 20 42 42 H 1.08998 * 110.59905 * 80.81890 * 22 21 20 43 43 H 1.08993 * 110.03486 * 238.56624 * 23 19 18 44 44 H 1.09000 * 110.02921 * 0.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 1.9875 2.0517 -1.3073 5 6 2.7530 3.3764 -1.3075 6 6 2.4846 4.1114 -2.5954 7 1 1.8329 3.6774 -3.3392 8 6 3.0703 5.3386 -2.8238 9 7 2.8356 5.9803 -3.9475 10 14 4.1959 6.0903 -1.5364 11 1 5.5935 5.6549 -1.7860 12 1 4.1174 7.5712 -1.6143 13 1 3.7717 5.6424 -0.1857 14 7 2.1471 -1.1085 -0.0005 15 7 1.4466 -2.3219 -0.0005 16 6 2.1205 -3.4891 -0.0005 17 8 1.5125 -4.5421 0.0000 18 7 3.4682 -3.4890 0.0000 19 6 4.2008 -4.7578 -0.0005 20 6 4.4068 -5.2496 1.4471 21 6 5.8214 -5.8823 1.4347 22 6 6.6133 -4.9326 0.5021 23 6 5.6030 -4.5566 -0.6014 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5139 27 1 1.9317 1.9144 0.8418 28 1 3.3288 1.1079 0.0895 29 1 2.3163 1.4423 -2.1491 30 1 0.9192 2.2489 -1.3969 31 1 2.4246 3.9859 -0.4656 32 1 3.8212 3.1788 -1.2182 33 1 3.2480 6.8434 -4.1083 34 1 0.4766 -2.3218 -0.0005 35 1 3.9532 -2.6490 -0.0037 36 1 3.6524 -5.5049 -0.5742 37 1 4.3699 -4.4119 2.1435 38 1 3.6564 -5.9962 1.7068 39 1 5.7892 -6.8907 1.0220 40 1 6.2532 -5.8898 2.4354 41 1 7.4725 -5.4481 0.0731 42 1 6.9348 -4.0432 1.0440 43 1 5.7355 -5.2068 -1.4661 44 1 5.7386 -3.5149 -0.8922 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841622358.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:37 Heat of formation + Delta-G solvation = -22.111100 kcal Electronic energy + Delta-G solvation = -21508.585363 eV Core-core repulsion = 18267.678006 eV Total energy + Delta-G solvation = -3240.907357 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.29083 -38.42147 -37.55716 -34.90358 -33.67954 -32.80660 -31.36447 -28.99467 -28.60231 -27.95127 -27.34871 -23.71166 -21.59595 -20.92944 -20.58462 -20.26666 -19.59568 -18.09067 -16.93777 -16.56992 -16.15714 -15.66052 -15.44270 -14.83740 -14.49418 -14.31145 -14.01576 -13.85542 -13.65443 -13.60420 -12.69529 -12.38638 -12.21624 -12.08169 -11.84751 -11.74818 -11.61124 -11.43312 -11.33684 -11.11240 -10.99657 -10.91374 -10.83961 -10.47243 -10.31553 -9.92776 -9.79197 -9.72935 -9.25216 -9.19156 -8.60792 -8.56483 -6.06917 -4.05431 1.88082 2.44951 3.19828 3.28829 3.36599 3.38865 3.47172 4.27757 4.37426 4.42546 4.56411 4.63289 4.93555 5.11419 5.16783 5.20704 5.24681 5.27331 5.29862 5.30708 5.37788 5.55058 5.63033 5.64659 5.75152 5.77118 5.80252 5.86890 5.95279 6.00121 6.04928 6.22834 6.45504 6.50883 6.55174 6.73453 6.82702 7.24240 7.31434 7.38110 7.75955 8.08657 8.50503 8.55250 8.98009 9.55292 11.06569 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018833 B = 0.002995 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.383614 B = 9347.614493 C =10313.598292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.130 3.870 3 C -0.069 4.069 4 C -0.096 4.096 5 C -0.013 4.013 6 C -0.522 4.522 7 H 0.071 0.929 8 C 0.065 3.935 9 N -0.904 5.904 10 Si 0.881 3.119 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.265 1.265 14 N -0.276 5.276 15 N -0.595 5.595 16 C 0.732 3.268 17 O -0.595 6.595 18 N -0.724 5.724 19 C 0.155 3.845 20 C -0.136 4.136 21 C -0.124 4.124 22 C -0.124 4.124 23 C -0.133 4.133 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.017 0.983 32 H 0.013 0.987 33 H 0.263 0.737 34 H 0.397 0.603 35 H 0.409 0.591 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.071 -19.773 11.811 23.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.064 4.064 3 C -0.108 4.108 4 C -0.135 4.135 5 C -0.051 4.051 6 C -0.560 4.560 7 H 0.089 0.911 8 C -0.136 4.136 9 N -0.543 5.543 10 Si 0.708 3.292 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.189 1.189 14 N -0.085 5.085 15 N -0.343 5.343 16 C 0.432 3.568 17 O -0.471 6.471 18 N -0.379 5.379 19 C 0.049 3.951 20 C -0.174 4.174 21 C -0.162 4.162 22 C -0.162 4.162 23 C -0.171 4.171 24 H 0.102 0.898 25 H 0.113 0.887 26 H 0.083 0.917 27 H 0.104 0.896 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.036 0.964 32 H 0.031 0.969 33 H 0.073 0.927 34 H 0.240 0.760 35 H 0.246 0.754 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.681 -21.015 11.706 24.336 hybrid contribution -0.504 1.200 0.472 1.385 sum 3.177 -19.815 12.179 23.474 Atomic orbital electron populations 1.21411 0.92901 1.04422 1.03566 1.25255 0.94693 0.93822 0.92616 1.20739 0.99864 0.89072 1.01155 1.21465 1.01043 0.97314 0.93675 1.19578 0.95239 0.92440 0.97833 1.21135 1.29547 1.03293 1.02002 0.91078 1.25051 0.96304 0.96939 0.95293 1.69921 1.44567 1.15236 1.24564 0.86764 0.81404 0.78235 0.82784 1.20303 1.21472 1.18918 1.74007 1.25595 0.91736 1.17160 1.46392 1.08401 1.02060 1.77460 1.15494 0.82419 0.82000 0.76856 1.90964 1.68287 1.28670 1.59184 1.45294 1.04448 1.09901 1.78283 1.21545 0.91830 0.85304 0.96428 1.22834 0.97027 1.00785 0.96798 1.22487 0.95087 0.98867 0.99758 1.22353 0.97665 0.99575 0.96567 1.22450 0.93290 1.02691 0.98677 0.89826 0.88683 0.91718 0.89592 0.90106 0.92465 0.92257 0.96422 0.96857 0.92732 0.75999 0.75405 0.89249 0.91156 0.91156 0.91329 0.91419 0.91402 0.91353 0.90640 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.46 36.01 0.34 -1.29 16 2 C 0.13 1.60 6.55 -78.91 -0.52 1.08 16 3 C -0.07 -0.93 5.60 -27.88 -0.16 -1.08 16 4 C -0.10 -1.68 5.03 -26.73 -0.13 -1.81 16 5 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 6 C -0.52 -14.34 9.66 -34.44 -0.33 -14.67 16 7 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 8 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 9 N -0.90 -27.44 13.96 55.43 0.77 -26.66 16 10 Si 0.88 21.04 27.47 -169.99 -4.67 16.37 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 13 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 14 N -0.28 -3.61 10.24 35.60 0.36 -3.25 16 15 N -0.60 -7.77 6.10 27.63 0.17 -7.60 16 16 C 0.73 10.53 8.67 -86.92 -0.75 9.78 16 17 O -0.59 -10.19 16.84 5.28 0.09 -10.10 16 18 N -0.72 -8.64 5.01 -57.58 -0.29 -8.93 16 19 C 0.15 1.58 3.24 -66.81 -0.22 1.37 16 20 C -0.14 -1.26 6.54 -25.03 -0.16 -1.43 16 21 C -0.12 -0.89 6.91 -24.70 -0.17 -1.06 16 22 C -0.12 -0.87 6.83 -25.07 -0.17 -1.04 16 23 C -0.13 -1.08 6.57 -25.61 -0.17 -1.24 16 24 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.09 0.95 6.91 -51.93 -0.36 0.59 16 26 H 0.06 0.61 6.31 -51.93 -0.33 0.28 16 27 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.08 1.09 8.11 -51.93 -0.42 0.67 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.06 1.00 7.01 -51.93 -0.36 0.63 16 31 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 32 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.40 4.67 6.48 -182.59 -1.18 3.49 16 35 H 0.41 4.66 7.35 -40.82 -0.30 4.36 16 36 H 0.09 1.04 7.58 -51.93 -0.39 0.64 16 37 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.62 7.61 -51.93 -0.40 0.23 16 LS Contribution 354.69 15.07 5.35 5.35 Total: -1.00 -31.95 354.69 -9.19 -41.15 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -8.32 Total: 3.73 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -2.65 Total: -10.04 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: 1.02 Total: -46.44 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.95 -9.19 -41.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841622358.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.034 kcal (2) G-P(sol) polarization free energy of solvation -31.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds