Wall clock time and date at job start Tue Mar 31 2020 05:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00171 * 2 1 4 4 H 1.48493 * 109.47450 * 270.00245 * 3 2 1 5 5 H 1.48498 * 109.46799 * 30.00536 * 3 2 1 6 6 H 1.48502 * 109.46846 * 150.00186 * 3 2 1 7 7 C 1.37875 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00328 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00111 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47369 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00762 * 180.02562 * 10 9 7 12 12 O 1.21586 * 119.99294 * 359.97438 * 11 10 9 13 13 N 1.34767 * 120.00792 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00244 * 179.97438 * 13 11 10 15 15 H 1.09003 * 109.34567 * 35.19384 * 14 13 11 16 16 C 1.52940 * 109.40643 * 275.38650 * 14 13 11 17 17 C 1.53221 * 108.68983 * 181.80126 * 16 14 13 18 18 C 1.52842 * 108.82423 * 58.72785 * 17 16 14 19 19 N 1.47145 * 110.11317 * 300.17573 * 18 17 16 20 20 C 1.47158 * 109.27109 * 184.34590 * 19 18 17 21 21 C 1.52840 * 110.00333 * 175.70044 * 20 19 18 22 22 C 1.52956 * 108.96694 * 59.88462 * 21 20 19 23 23 C 1.52936 * 108.62389 * 301.19236 * 22 21 20 24 24 C 1.46709 * 111.52966 * 60.58613 * 19 18 17 25 25 H 1.09004 * 109.50825 * 61.18214 * 24 19 18 26 26 H 0.96999 * 119.99877 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47011 * 60.00136 * 9 7 2 28 28 H 1.09005 * 109.47328 * 300.00115 * 9 7 2 29 29 H 0.97001 * 120.00139 * 359.97438 * 10 9 7 30 30 H 0.97001 * 120.00109 * 359.97438 * 13 11 10 31 31 H 1.09004 * 109.60164 * 301.55881 * 16 14 13 32 32 H 1.08998 * 109.60020 * 61.87802 * 16 14 13 33 33 H 1.08998 * 109.57889 * 178.52860 * 17 16 14 34 34 H 1.08996 * 109.58191 * 298.92698 * 17 16 14 35 35 H 1.09003 * 109.36269 * 179.97438 * 18 17 16 36 36 H 1.09002 * 109.36015 * 60.37390 * 18 17 16 37 37 H 1.09002 * 109.36523 * 295.83355 * 20 19 18 38 38 H 1.09001 * 109.36542 * 55.57412 * 20 19 18 39 39 H 1.09005 * 109.57597 * 179.55872 * 21 20 19 40 40 H 1.08994 * 109.57741 * 299.94977 * 21 20 19 41 41 H 1.09004 * 109.63194 * 181.45705 * 22 21 20 42 42 H 1.08997 * 109.76613 * 61.01613 * 22 21 20 43 43 H 1.09003 * 109.41264 * 297.97148 * 23 22 21 44 44 H 1.08994 * 109.35171 * 178.15894 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6525 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7537 -4.8834 -0.0011 12 8 0.5583 -5.1055 -0.0011 13 7 2.6294 -5.9078 -0.0005 14 6 2.1411 -7.2890 -0.0005 15 1 1.2285 -7.3493 -0.5937 16 6 1.8434 -7.7227 1.4355 17 6 1.3774 -9.1823 1.4210 18 6 2.4755 -10.0444 0.7989 19 7 2.7498 -9.5996 -0.5766 20 6 3.7327 -10.5049 -1.1929 21 6 3.9502 -10.1222 -2.6565 22 6 4.4668 -8.6840 -2.7228 23 6 3.4399 -7.7651 -2.0597 24 6 3.2064 -8.2058 -0.6107 25 1 4.1339 -8.1126 -0.0457 26 1 -0.4850 0.8400 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 3.1566 -3.4355 -0.0009 30 1 3.5831 -5.7306 -0.0002 31 1 2.7466 -7.6333 2.0392 32 1 1.0601 -7.0904 1.8536 33 1 1.1860 -9.5148 2.4412 34 1 0.4660 -9.2689 0.8295 35 1 2.1530 -11.0855 0.7846 36 1 3.3841 -9.9577 1.3948 37 1 4.6783 -10.4315 -0.6557 38 1 3.3645 -11.5294 -1.1382 39 1 4.6848 -10.7918 -3.1039 40 1 3.0071 -10.1975 -3.1978 41 1 4.6013 -8.3908 -3.7640 42 1 5.4182 -8.6095 -2.1962 43 1 2.5000 -7.8157 -2.6095 44 1 3.8114 -6.7405 -2.0712 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847363340.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:56 Heat of formation + Delta-G solvation = -47.055462 kcal Electronic energy + Delta-G solvation = -22793.737166 eV Core-core repulsion = 19551.748141 eV Total energy + Delta-G solvation = -3241.989025 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.37294 -38.78445 -35.84057 -34.54397 -33.94064 -32.35495 -31.42675 -30.73877 -28.27982 -26.77096 -23.75161 -23.57454 -22.85449 -21.96414 -20.27609 -19.91376 -19.72826 -18.01256 -16.56203 -15.91382 -15.57768 -15.16016 -14.84538 -14.74385 -14.58836 -14.23794 -14.09444 -13.78447 -13.48524 -13.37492 -13.09485 -12.81246 -12.15749 -11.99508 -11.92615 -11.75090 -11.62238 -11.25247 -11.09525 -10.94190 -10.89024 -10.82366 -10.76695 -10.47569 -10.27185 -10.09749 -9.34242 -9.32669 -8.71661 -8.62086 -8.51440 -7.71153 -6.12556 -4.18929 3.22730 3.26449 3.32846 3.35583 3.82375 4.01070 4.35310 4.51269 4.56349 4.69142 4.80586 4.93168 5.00152 5.07985 5.12890 5.17807 5.23480 5.25934 5.30440 5.41921 5.50466 5.59443 5.63673 5.65420 5.77541 5.81760 5.86418 5.95964 6.04057 6.04574 6.21987 6.30471 6.39446 6.82524 6.87440 7.06207 7.18000 7.56481 7.59726 7.61480 7.95440 8.08700 8.80385 8.99989 9.38577 9.52979 10.97725 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028744 B = 0.003443 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.879925 B = 8130.316607 C = 8756.722067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.268 3.732 10 N -0.730 5.730 11 C 0.695 3.305 12 O -0.599 6.599 13 N -0.752 5.752 14 C 0.175 3.825 15 H 0.094 0.906 16 C -0.134 4.134 17 C -0.115 4.115 18 C 0.053 3.947 19 N -0.524 5.524 20 C 0.056 3.944 21 C -0.118 4.118 22 C -0.122 4.122 23 C -0.113 4.113 24 C 0.084 3.916 25 H 0.042 0.958 26 H 0.265 0.735 27 H 0.024 0.976 28 H 0.024 0.976 29 H 0.385 0.615 30 H 0.388 0.612 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.031 0.969 37 H 0.031 0.969 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.073 0.927 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.481 -21.415 -1.285 23.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.383 5.383 11 C 0.395 3.605 12 O -0.478 6.478 13 N -0.409 5.409 14 C 0.068 3.932 15 H 0.112 0.888 16 C -0.173 4.173 17 C -0.153 4.153 18 C -0.075 4.075 19 N -0.250 5.250 20 C -0.072 4.072 21 C -0.156 4.156 22 C -0.160 4.160 23 C -0.151 4.151 24 C -0.025 4.025 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.217 0.783 30 H 0.221 0.779 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.050 0.950 37 H 0.049 0.951 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.722 -21.450 -1.560 23.208 hybrid contribution 2.121 1.172 0.536 2.482 sum 10.843 -20.278 -1.025 23.018 Atomic orbital electron populations 1.69982 1.06076 1.27216 1.49019 1.24944 0.94908 0.99372 0.94824 0.86419 0.79593 0.82725 0.78174 1.20497 1.21037 1.19809 1.21232 0.93239 0.90489 1.52997 0.92005 1.18959 0.87779 0.81067 0.97560 1.45714 1.10688 1.04463 1.77387 1.16111 0.85213 0.80969 0.78246 1.90870 1.14193 1.84162 1.58547 1.45174 1.08607 1.04912 1.82163 1.20634 0.97313 0.79372 0.95863 0.88797 1.22036 1.01753 0.96259 0.97240 1.21541 0.98778 0.94475 1.00517 1.22160 0.97897 0.99312 0.88140 1.62178 1.43613 1.01358 1.17854 1.22104 0.93483 0.96472 0.95157 1.21549 1.01620 0.96552 0.95870 1.21553 0.98340 0.95205 1.00887 1.21658 1.00062 0.98988 0.94402 1.21797 0.95871 0.88156 0.96669 0.94011 0.92491 0.95773 0.95810 0.78289 0.77911 0.92437 0.90604 0.91252 0.90657 0.90686 0.95032 0.95088 0.90697 0.91684 0.90876 0.91620 0.92374 0.90809 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.54 -14.87 9.28 -34.44 -0.32 -15.19 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.27 7.26 5.43 -5.20 -0.03 7.23 16 10 N -0.73 -15.82 5.55 -66.42 -0.37 -16.19 16 11 C 0.69 14.48 8.52 -86.93 -0.74 13.74 16 12 O -0.60 -15.13 16.01 5.29 0.08 -15.04 16 13 N -0.75 -11.42 4.37 -58.59 -0.26 -11.68 16 14 C 0.17 2.43 1.96 -67.85 -0.13 2.30 16 15 H 0.09 1.59 7.58 -51.93 -0.39 1.20 16 16 C -0.13 -1.75 5.58 -26.65 -0.15 -1.90 16 17 C -0.11 -1.22 6.10 -26.70 -0.16 -1.38 16 18 C 0.05 0.49 5.33 -3.77 -0.02 0.47 16 19 N -0.52 -5.43 4.71 -226.28 -1.07 -6.50 16 20 C 0.06 0.47 5.34 -3.76 -0.02 0.45 16 21 C -0.12 -0.96 6.08 -26.84 -0.16 -1.12 16 22 C -0.12 -1.07 6.02 -26.79 -0.16 -1.23 16 23 C -0.11 -1.23 5.08 -26.64 -0.14 -1.36 16 24 C 0.08 0.94 1.82 -67.58 -0.12 0.81 16 25 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.39 7.13 8.34 -40.82 -0.34 6.79 16 30 H 0.39 4.80 8.45 -40.82 -0.34 4.45 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.61 8.03 -51.93 -0.42 0.19 16 36 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.56 8.03 -51.93 -0.42 0.14 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.07 0.79 7.49 -51.93 -0.39 0.40 16 LS Contribution 344.57 15.07 5.19 5.19 Total: -1.00 -32.25 344.57 -10.70 -42.95 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -7.75 Total: 6.42 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -2.25 Total: 4.49 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: -0.95 Total: -60.02 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: 0.08 Total: -15.04 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.25 -10.70 -42.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847363340.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.101 kcal (2) G-P(sol) polarization free energy of solvation -32.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds