Wall clock time and date at job start Tue Mar 31 2020 05:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47006 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99731 * 179.97438 * 10 9 7 12 12 O 1.21587 * 120.00334 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99868 * 179.97438 * 11 10 9 14 14 C 1.46506 * 119.99940 * 180.02562 * 13 11 10 15 15 H 1.08997 * 109.40417 * 324.84203 * 14 13 11 16 16 C 1.52939 * 109.41048 * 84.61673 * 14 13 11 17 17 C 1.52928 * 108.84426 * 178.04550 * 16 14 13 18 18 C 1.52848 * 108.87212 * 301.40895 * 17 16 14 19 19 N 1.47149 * 110.11274 * 59.74003 * 18 17 16 20 20 C 1.47149 * 109.27641 * 175.64313 * 19 18 17 21 21 C 1.52834 * 110.12275 * 184.33231 * 20 19 18 22 22 C 1.53216 * 108.82855 * 300.18398 * 21 20 19 23 23 C 1.52949 * 108.80387 * 58.65113 * 22 21 20 24 24 C 1.46706 * 111.51959 * 299.40686 * 19 18 17 25 25 H 1.09002 * 109.51122 * 298.84897 * 24 19 18 26 26 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46909 * 299.99046 * 9 7 2 28 28 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 29 29 H 0.96989 * 120.00004 * 359.97438 * 10 9 7 30 30 H 0.96999 * 120.00223 * 359.97438 * 13 11 10 31 31 H 1.08996 * 109.60028 * 297.95464 * 16 14 13 32 32 H 1.08998 * 109.60191 * 58.43003 * 16 14 13 33 33 H 1.08998 * 109.61596 * 181.55588 * 17 16 14 34 34 H 1.08994 * 109.49932 * 61.18710 * 17 16 14 35 35 H 1.08998 * 109.36144 * 299.54912 * 18 17 16 36 36 H 1.08995 * 109.25854 * 179.87593 * 18 17 16 37 37 H 1.09003 * 109.35875 * 304.53860 * 20 19 18 38 38 H 1.08997 * 109.35838 * 64.12947 * 20 19 18 39 39 H 1.08999 * 109.57932 * 59.99260 * 21 20 19 40 40 H 1.09004 * 109.57586 * 180.24555 * 21 20 19 41 41 H 1.08996 * 109.60033 * 178.48284 * 22 21 20 42 42 H 1.09003 * 109.60114 * 298.96231 * 22 21 20 43 43 H 1.09001 * 109.53101 * 181.94973 * 23 22 21 44 44 H 1.08994 * 109.29391 * 62.17496 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7540 -4.8833 0.0011 12 8 0.5586 -5.1056 0.0020 13 7 2.6298 -5.9077 0.0005 14 6 2.1415 -7.2889 0.0005 15 1 1.2286 -7.3503 0.5929 16 6 1.8439 -7.7228 -1.4355 17 6 1.3821 -9.1807 -1.4254 18 6 2.4801 -10.0428 -0.8028 19 7 2.7517 -9.5998 0.5739 20 6 3.7341 -10.5052 1.1906 21 6 3.9503 -10.1273 2.6556 22 6 4.4653 -8.6859 2.7237 23 6 3.4410 -7.7645 2.0593 24 6 3.2070 -8.2057 0.6107 25 1 4.1351 -8.1108 0.0468 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6242 -2.5567 0.8904 28 1 0.6248 -2.5571 -0.8896 29 1 3.1568 -3.4353 0.0002 30 1 3.5835 -5.7304 -0.0006 31 1 1.0585 -7.0925 -1.8526 32 1 2.7470 -7.6332 -2.0392 33 1 1.1928 -9.5116 -2.4465 34 1 0.4698 -9.2693 -0.8356 35 1 3.3896 -9.9542 -1.3970 36 1 2.1564 -11.0835 -0.7905 37 1 3.3676 -11.5301 1.1319 38 1 4.6803 -10.4306 0.6547 39 1 3.0066 -10.2039 3.1957 40 1 4.6822 -10.8003 3.1022 41 1 4.5983 -8.3939 3.7654 42 1 5.4165 -8.6121 2.1965 43 1 3.8118 -6.7395 2.0704 44 1 2.5014 -7.8145 2.6095 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847363342.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:58 Heat of formation + Delta-G solvation = -51.007796 kcal Electronic energy + Delta-G solvation = -22831.517847 eV Core-core repulsion = 19589.357435 eV Total energy + Delta-G solvation = -3242.160412 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.43222 -38.88893 -35.90338 -34.67133 -34.13507 -32.48008 -31.46534 -30.78031 -28.26525 -26.36402 -23.76776 -23.60281 -22.88633 -22.12726 -20.36830 -19.99219 -19.78066 -18.12752 -16.91410 -16.21102 -15.66213 -15.12770 -14.92270 -14.78936 -14.34694 -14.16057 -14.04293 -13.76139 -13.60316 -13.43410 -13.15460 -12.91324 -12.28054 -12.17876 -12.06352 -11.81687 -11.69720 -11.29209 -11.14156 -10.97418 -10.89735 -10.82047 -10.75907 -10.51927 -10.15045 -10.14536 -9.49417 -8.77084 -8.76382 -8.61428 -8.55510 -7.85868 -6.48676 -4.21619 3.15317 3.39131 3.40986 3.60066 3.76180 3.89189 4.45407 4.47089 4.51971 4.64707 4.76051 4.88863 4.95532 5.03207 5.06828 5.09314 5.20607 5.26341 5.30364 5.37872 5.46685 5.55263 5.59039 5.61373 5.73632 5.77570 5.81850 5.92105 5.99227 5.99885 6.17495 6.24495 6.33689 6.75842 6.83124 6.93671 7.00286 7.30048 7.39093 7.50969 7.90405 8.31961 8.66335 8.86065 9.30994 9.53146 10.91672 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028700 B = 0.003456 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.378979 B = 8100.454227 C = 8726.689625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 1.076 2.924 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.622 4.622 8 H 0.056 0.944 9 C 0.258 3.742 10 N -0.726 5.726 11 C 0.696 3.304 12 O -0.600 6.600 13 N -0.751 5.751 14 C 0.174 3.826 15 H 0.094 0.906 16 C -0.134 4.134 17 C -0.115 4.115 18 C 0.053 3.947 19 N -0.524 5.524 20 C 0.056 3.944 21 C -0.118 4.118 22 C -0.122 4.122 23 C -0.113 4.113 24 C 0.084 3.916 25 H 0.042 0.958 26 H 0.273 0.727 27 H 0.014 0.986 28 H 0.014 0.986 29 H 0.388 0.612 30 H 0.389 0.611 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.032 0.968 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.031 0.969 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.958 -21.835 1.283 24.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.184 4.184 3 Si 0.903 3.097 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.660 4.660 8 H 0.074 0.926 9 C 0.136 3.864 10 N -0.378 5.378 11 C 0.395 3.605 12 O -0.479 6.479 13 N -0.407 5.407 14 C 0.068 3.932 15 H 0.112 0.888 16 C -0.173 4.173 17 C -0.153 4.153 18 C -0.075 4.075 19 N -0.250 5.250 20 C -0.072 4.072 21 C -0.156 4.156 22 C -0.160 4.160 23 C -0.151 4.151 24 C -0.025 4.025 25 H 0.060 0.940 26 H 0.084 0.916 27 H 0.032 0.968 28 H 0.032 0.968 29 H 0.220 0.780 30 H 0.222 0.778 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.050 0.950 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.049 0.951 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.163 -20.355 1.564 22.377 hybrid contribution 1.933 -1.494 -0.547 2.504 sum 11.096 -21.849 1.017 24.526 Atomic orbital electron populations 1.70749 1.06864 1.31101 1.44998 1.25865 0.96437 1.02673 0.93392 0.83447 0.74791 0.74910 0.76516 1.20571 1.21343 1.21320 1.22067 0.94529 0.91544 1.57901 0.92585 1.19018 0.88482 0.82602 0.96265 1.45509 1.10621 1.04177 1.77444 1.16114 0.85233 0.80967 0.78162 1.90866 1.14222 1.84196 1.58634 1.45151 1.08620 1.04916 1.81995 1.20646 0.97357 0.79265 0.95917 0.88793 1.21983 1.01762 0.96349 0.97202 1.21495 0.98821 0.94440 1.00569 1.22163 0.97890 0.99359 0.88099 1.62161 1.43739 1.01324 1.17776 1.22098 0.93484 0.96469 0.95170 1.21591 1.01672 0.96507 0.95824 1.21593 0.98347 0.95141 1.00871 1.21658 1.00121 0.98961 0.94387 1.21788 0.95832 0.88181 0.96683 0.93992 0.91643 0.96768 0.96815 0.78000 0.77817 0.90664 0.92411 0.91191 0.90675 0.94979 0.90622 0.90682 0.95076 0.90902 0.91586 0.91582 0.92371 0.91080 0.90859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.66 13.65 55.43 0.76 -26.90 16 2 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 3 Si 1.08 24.61 29.90 -169.99 -5.08 19.53 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.23 7.11 56.52 0.40 -5.82 16 6 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.62 -17.35 9.28 -34.44 -0.32 -17.67 16 8 H 0.06 1.48 7.60 -52.48 -0.40 1.08 16 9 C 0.26 6.98 4.74 -5.19 -0.02 6.96 16 10 N -0.73 -15.83 5.55 -66.42 -0.37 -16.20 16 11 C 0.70 14.48 8.52 -86.92 -0.74 13.74 16 12 O -0.60 -15.05 16.01 5.29 0.08 -14.96 16 13 N -0.75 -11.39 4.36 -58.59 -0.26 -11.65 16 14 C 0.17 2.42 1.96 -67.84 -0.13 2.28 16 15 H 0.09 1.59 7.58 -51.93 -0.39 1.19 16 16 C -0.13 -1.74 5.56 -26.80 -0.15 -1.89 16 17 C -0.11 -1.21 6.10 -26.85 -0.16 -1.37 16 18 C 0.05 0.49 5.33 -3.77 -0.02 0.47 16 19 N -0.52 -5.39 4.71 -226.29 -1.07 -6.45 16 20 C 0.06 0.47 5.33 -3.77 -0.02 0.45 16 21 C -0.12 -0.95 6.11 -26.71 -0.16 -1.11 16 22 C -0.12 -1.06 6.02 -26.65 -0.16 -1.22 16 23 C -0.11 -1.23 5.10 -26.64 -0.14 -1.36 16 24 C 0.08 0.93 1.81 -67.58 -0.12 0.81 16 25 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.27 8.50 7.22 -40.82 -0.29 8.20 16 27 H 0.01 0.42 8.01 -51.93 -0.42 0.01 16 28 H 0.01 0.41 8.01 -51.93 -0.42 -0.01 16 29 H 0.39 7.33 8.33 -40.82 -0.34 6.98 16 30 H 0.39 4.82 8.45 -40.82 -0.34 4.48 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.60 8.03 -51.93 -0.42 0.19 16 37 H 0.07 0.55 8.03 -51.93 -0.42 0.14 16 38 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.79 7.48 -51.93 -0.39 0.40 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 343.27 15.07 5.17 5.17 Total: -1.00 -32.88 343.27 -10.71 -43.58 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -7.70 Total: 7.27 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -2.25 Total: 0.62 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: -0.93 Total: -61.21 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: 0.08 Total: -14.96 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -5.08 Total: 19.53 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.88 -10.71 -43.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847363342.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.427 kcal (2) G-P(sol) polarization free energy of solvation -32.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds