Wall clock time and date at job start Tue Mar 31 2020 05:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 120.00087 * 2 1 4 4 H 1.48503 * 109.47195 * 269.99598 * 3 2 1 5 5 H 1.48496 * 109.47188 * 30.00244 * 3 2 1 6 6 H 1.48506 * 109.47002 * 150.00226 * 3 2 1 7 7 C 1.37882 * 119.99667 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99986 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99986 * 179.97438 * 7 2 1 10 10 N 1.46495 * 109.47133 * 179.97438 * 9 7 2 11 11 C 1.34786 * 119.99724 * 180.02562 * 10 9 7 12 12 O 1.21588 * 120.00155 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99667 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99964 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.34348 * 325.18728 * 14 13 11 16 16 C 1.52947 * 109.41012 * 84.99385 * 14 13 11 17 17 C 1.53225 * 108.68729 * 62.03349 * 16 14 13 18 18 C 1.52837 * 108.82554 * 58.72199 * 17 16 14 19 19 N 1.47155 * 110.11496 * 300.17629 * 18 17 16 20 20 C 1.47148 * 109.27656 * 184.36297 * 19 18 17 21 21 C 1.52835 * 110.11569 * 175.65683 * 20 19 18 22 22 C 1.53223 * 108.82645 * 59.82193 * 21 20 19 23 23 C 1.52941 * 108.68871 * 301.27268 * 22 21 20 24 24 C 1.46708 * 111.51906 * 60.59865 * 19 18 17 25 25 H 1.08998 * 109.63417 * 61.22854 * 24 19 18 26 26 H 0.97000 * 119.99423 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.46759 * 60.00244 * 9 7 2 28 28 H 1.08998 * 109.47122 * 300.00428 * 9 7 2 29 29 H 0.96997 * 120.00113 * 0.02562 * 10 9 7 30 30 H 0.96997 * 120.00171 * 359.97438 * 13 11 10 31 31 H 1.08997 * 109.59917 * 181.79611 * 16 14 13 32 32 H 1.08999 * 109.59661 * 302.27485 * 16 14 13 33 33 H 1.09000 * 109.57368 * 178.52001 * 17 16 14 34 34 H 1.08992 * 109.58159 * 298.91611 * 17 16 14 35 35 H 1.09001 * 109.36392 * 179.97438 * 18 17 16 36 36 H 1.09000 * 109.25960 * 60.31033 * 18 17 16 37 37 H 1.09003 * 109.36303 * 55.45895 * 20 19 18 38 38 H 1.09001 * 109.36651 * 295.85367 * 20 19 18 39 39 H 1.09000 * 109.57675 * 300.01837 * 21 20 19 40 40 H 1.09000 * 109.57756 * 179.62685 * 21 20 19 41 41 H 1.08998 * 109.59909 * 181.51443 * 22 21 20 42 42 H 1.08993 * 109.60013 * 61.03448 * 22 21 20 43 43 H 1.09005 * 109.40890 * 297.96713 * 23 22 21 44 44 H 1.08994 * 109.41018 * 178.20053 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1942 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 5.3249 -2.8217 -0.0009 12 8 6.1151 -1.8976 -0.0014 13 7 5.7741 -4.0924 -0.0013 14 6 7.2144 -4.3602 -0.0018 15 1 7.7235 -3.5959 -0.5890 16 6 7.7376 -4.3297 1.4350 17 6 7.0446 -5.4388 2.2335 18 6 7.3366 -6.7826 1.5666 19 7 6.8335 -6.7812 0.1837 20 6 7.0296 -8.1151 -0.4058 21 6 6.4166 -8.1667 -1.8049 22 6 7.0976 -7.1112 -2.6823 23 6 6.8978 -5.7374 -2.0406 24 6 7.4762 -5.7369 -0.6216 25 1 8.5501 -5.9178 -0.6663 26 1 -0.4849 0.8401 -0.0004 27 1 3.8752 -0.6806 0.8889 28 1 3.8745 -0.6801 -0.8911 29 1 3.3694 -3.3126 -0.0010 30 1 5.1438 -4.8297 -0.0013 31 1 8.8146 -4.4970 1.4356 32 1 7.5152 -3.3619 1.8846 33 1 7.4266 -5.4470 3.2543 34 1 5.9690 -5.2629 2.2453 35 1 6.8476 -7.5786 2.1283 36 1 8.4130 -6.9541 1.5595 37 1 6.5513 -8.8634 0.2261 38 1 8.0966 -8.3284 -0.4707 39 1 5.3487 -7.9571 -1.7437 40 1 6.5725 -9.1557 -2.2357 41 1 6.6509 -7.1188 -3.6766 42 1 8.1630 -7.3290 -2.7559 43 1 5.8328 -5.5091 -1.9976 44 1 7.4053 -4.9808 -2.6389 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847363344.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:01 Heat of formation + Delta-G solvation = -42.141003 kcal Electronic energy + Delta-G solvation = -23176.902436 eV Core-core repulsion = 19935.126517 eV Total energy + Delta-G solvation = -3241.775919 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.52405 -38.75876 -35.90931 -34.36233 -33.91157 -32.34910 -31.40399 -30.83682 -28.52785 -27.28290 -23.75649 -23.53758 -22.71909 -22.07616 -20.41305 -19.87724 -19.16122 -18.18006 -16.44119 -16.13119 -15.82998 -15.20118 -15.07271 -14.60287 -14.36550 -14.32155 -13.99232 -13.90429 -13.70189 -13.28473 -13.04684 -12.73342 -12.37366 -12.23550 -12.14258 -11.89317 -11.74147 -11.39419 -11.05021 -10.94416 -10.90278 -10.77911 -10.70390 -10.36173 -10.10532 -9.90792 -9.47544 -9.37153 -8.73450 -8.67310 -8.49218 -7.88690 -6.15364 -4.16507 3.31270 3.35461 3.41380 3.48012 3.68161 3.93937 4.39469 4.47747 4.52494 4.68347 4.80148 4.92469 4.99486 5.05734 5.08674 5.17291 5.20472 5.22306 5.36520 5.39764 5.47379 5.52809 5.61733 5.65079 5.71615 5.78999 5.86692 5.93124 5.98633 6.01669 6.20279 6.26603 6.30421 6.82702 6.86485 6.88841 7.06317 7.19736 7.35415 7.51932 7.75029 8.37084 8.79162 8.93159 9.34497 9.48474 10.96753 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024721 B = 0.003988 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.365137 B = 7020.077577 C = 7369.116349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.540 4.540 8 H 0.079 0.921 9 C 0.239 3.761 10 N -0.724 5.724 11 C 0.694 3.306 12 O -0.609 6.609 13 N -0.738 5.738 14 C 0.176 3.824 15 H 0.088 0.912 16 C -0.136 4.136 17 C -0.116 4.116 18 C 0.055 3.945 19 N -0.527 5.527 20 C 0.055 3.945 21 C -0.118 4.118 22 C -0.122 4.122 23 C -0.114 4.114 24 C 0.081 3.919 25 H 0.051 0.949 26 H 0.267 0.733 27 H 0.021 0.979 28 H 0.017 0.983 29 H 0.392 0.608 30 H 0.399 0.601 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.030 0.970 37 H 0.074 0.926 38 H 0.030 0.970 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.056 0.944 43 H 0.077 0.923 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.277 -18.167 -0.632 24.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.127 4.127 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.578 4.578 8 H 0.097 0.903 9 C 0.117 3.883 10 N -0.376 5.376 11 C 0.394 3.606 12 O -0.489 6.489 13 N -0.395 5.395 14 C 0.069 3.931 15 H 0.106 0.894 16 C -0.175 4.175 17 C -0.154 4.154 18 C -0.073 4.073 19 N -0.252 5.252 20 C -0.073 4.073 21 C -0.156 4.156 22 C -0.159 4.159 23 C -0.152 4.152 24 C -0.028 4.028 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.039 0.961 28 H 0.035 0.965 29 H 0.225 0.775 30 H 0.234 0.766 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.049 0.951 37 H 0.092 0.908 38 H 0.048 0.952 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.096 0.904 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 16.303 -17.044 -0.628 23.594 hybrid contribution 0.618 0.013 0.019 0.619 sum 16.921 -17.031 -0.610 24.016 Atomic orbital electron populations 1.69891 1.06207 1.27311 1.49821 1.24783 0.94769 0.99128 0.93976 0.86812 0.80607 0.83230 0.79005 1.19910 1.21017 1.18450 1.21119 0.88674 0.95140 1.52858 0.90329 1.19313 0.94693 0.77866 0.96470 1.45371 1.03853 1.10844 1.77550 1.16160 0.83432 0.82905 0.78105 1.90842 1.55384 1.43424 1.59267 1.45052 1.06974 1.06370 1.81071 1.20694 0.81861 0.94825 0.95739 0.89400 1.22026 0.99186 0.99948 0.96293 1.21543 1.02215 0.93468 0.98145 1.22137 0.97469 0.98592 0.89097 1.62212 1.57625 1.03529 1.01883 1.22096 0.98536 0.90533 0.96113 1.21595 1.01113 0.98687 0.94209 1.21591 1.00254 0.95145 0.98933 1.21649 1.02832 0.96899 0.93803 1.21918 0.96317 0.91108 0.93444 0.93156 0.92360 0.96073 0.96519 0.77541 0.76580 0.91884 0.90671 0.91671 0.90638 0.90777 0.95133 0.90774 0.95176 0.90791 0.91680 0.91637 0.92475 0.90434 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.92 13.96 55.43 0.77 -26.15 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 4 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 7 C -0.54 -15.11 9.83 -34.44 -0.34 -15.45 16 8 H 0.08 2.29 7.84 -52.49 -0.41 1.88 16 9 C 0.24 6.08 4.50 -5.20 -0.02 6.06 16 10 N -0.72 -15.29 5.55 -66.42 -0.37 -15.66 16 11 C 0.69 13.86 8.53 -86.91 -0.74 13.12 16 12 O -0.61 -14.48 16.00 5.29 0.08 -14.40 16 13 N -0.74 -10.92 3.50 -58.58 -0.20 -11.13 16 14 C 0.18 2.27 2.20 -67.84 -0.15 2.12 16 15 H 0.09 1.30 7.56 -51.93 -0.39 0.91 16 16 C -0.14 -1.65 5.69 -26.64 -0.15 -1.80 16 17 C -0.12 -1.22 5.95 -26.70 -0.16 -1.38 16 18 C 0.05 0.50 5.33 -3.77 -0.02 0.48 16 19 N -0.53 -5.03 4.27 -226.29 -0.97 -5.99 16 20 C 0.05 0.44 5.33 -3.77 -0.02 0.42 16 21 C -0.12 -0.92 6.10 -26.70 -0.16 -1.09 16 22 C -0.12 -1.01 6.02 -26.65 -0.16 -1.17 16 23 C -0.11 -1.16 5.11 -26.64 -0.14 -1.30 16 24 C 0.08 0.83 1.95 -67.58 -0.13 0.70 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 27 H 0.02 0.57 7.20 -51.93 -0.37 0.20 16 28 H 0.02 0.45 7.57 -51.93 -0.39 0.05 16 29 H 0.39 7.39 8.34 -40.82 -0.34 7.05 16 30 H 0.40 5.35 7.89 -40.82 -0.32 5.03 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.92 7.65 -51.93 -0.40 0.52 16 35 H 0.07 0.61 8.03 -51.93 -0.42 0.19 16 36 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.07 0.55 8.03 -51.93 -0.42 0.13 16 38 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.90 7.14 -51.93 -0.37 0.53 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 338.62 15.07 5.10 5.10 Total: -1.00 -31.81 338.62 -10.19 -42.00 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -7.65 Total: 6.20 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -2.29 Total: 2.83 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -0.77 Total: -58.93 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.08 Total: -14.40 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.81 -10.19 -42.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847363344.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.143 kcal (2) G-P(sol) polarization free energy of solvation -31.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds