Wall clock time and date at job start Tue Mar 31 2020 05:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00114 * 2 1 4 4 H 1.48508 * 109.46820 * 270.00029 * 3 2 1 5 5 H 1.48502 * 109.47212 * 29.99518 * 3 2 1 6 6 H 1.48495 * 109.47347 * 149.99997 * 3 2 1 7 7 C 1.37878 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99974 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99957 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47326 * 179.97438 * 9 7 2 11 11 C 1.34769 * 120.00155 * 180.02562 * 10 9 7 12 12 O 1.21587 * 119.99998 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99874 * 180.02562 * 11 10 9 14 14 C 1.46495 * 119.99662 * 179.97438 * 13 11 10 15 15 H 1.08998 * 109.41473 * 35.15381 * 14 13 11 16 16 C 1.52948 * 109.23732 * 275.40466 * 14 13 11 17 17 C 1.53219 * 108.69566 * 297.80876 * 16 14 13 18 18 C 1.52835 * 108.93474 * 301.48048 * 17 16 14 19 19 N 1.47151 * 110.11156 * 59.75170 * 18 17 16 20 20 C 1.47154 * 109.27851 * 175.62693 * 19 18 17 21 21 C 1.52839 * 110.11441 * 184.35775 * 20 19 18 22 22 C 1.53223 * 108.82011 * 300.17180 * 21 20 19 23 23 C 1.52932 * 108.69368 * 58.72594 * 22 21 20 24 24 C 1.46716 * 111.52281 * 299.39594 * 19 18 17 25 25 H 1.09004 * 109.51163 * 298.84872 * 24 19 18 26 26 H 0.96996 * 120.00112 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.46888 * 60.00301 * 9 7 2 28 28 H 1.09004 * 109.47202 * 300.00397 * 9 7 2 29 29 H 0.97002 * 119.99503 * 0.02562 * 10 9 7 30 30 H 0.96997 * 120.00264 * 359.97438 * 13 11 10 31 31 H 1.08997 * 109.49941 * 178.10630 * 16 14 13 32 32 H 1.09001 * 109.70733 * 57.63251 * 16 14 13 33 33 H 1.09002 * 109.58004 * 181.61001 * 17 16 14 34 34 H 1.09001 * 109.57706 * 61.34756 * 17 16 14 35 35 H 1.08993 * 109.36743 * 179.97438 * 18 17 16 36 36 H 1.09005 * 109.36447 * 299.68315 * 18 17 16 37 37 H 1.08996 * 109.35629 * 304.55268 * 20 19 18 38 38 H 1.08994 * 109.36323 * 64.15919 * 20 19 18 39 39 H 1.08992 * 109.58008 * 180.36797 * 21 20 19 40 40 H 1.09004 * 109.68865 * 60.03468 * 21 20 19 41 41 H 1.09003 * 109.59410 * 298.96585 * 22 21 20 42 42 H 1.08999 * 109.73151 * 178.57277 * 22 21 20 43 43 H 1.09001 * 109.40548 * 181.80352 * 23 22 21 44 44 H 1.08995 * 109.40748 * 62.04141 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2029 -3.6127 0.0015 11 6 1.7537 -4.8833 0.0019 12 8 0.5583 -5.1055 0.0029 13 7 2.6296 -5.9078 0.0022 14 6 2.1412 -7.2889 0.0032 15 1 1.2277 -7.3507 -0.5884 16 6 1.8454 -7.7179 1.4412 17 6 3.1488 -7.6717 2.2453 18 6 4.1705 -8.5987 1.5875 19 7 4.4277 -8.1677 0.2042 20 6 5.4885 -9.0061 -0.3766 21 6 5.8468 -8.5061 -1.7757 22 6 4.5969 -8.5723 -2.6595 23 6 3.5030 -7.7108 -2.0268 24 6 3.2061 -8.2060 -0.6075 25 1 2.8276 -9.2274 -0.6476 26 1 -0.4850 0.8400 0.0004 27 1 0.6240 -2.5575 -0.8881 28 1 0.6246 -2.5563 0.8920 29 1 3.1566 -3.4354 0.0010 30 1 3.5832 -5.7306 0.0017 31 1 1.4499 -8.7335 1.4439 32 1 1.1177 -7.0385 1.8851 33 1 2.9598 -8.0026 3.2666 34 1 3.5348 -6.6524 2.2571 35 1 5.1012 -8.5709 2.1540 36 1 3.7825 -9.6173 1.5805 37 1 6.3722 -8.9630 0.2600 38 1 5.1405 -10.0371 -0.4394 39 1 6.6280 -9.1367 -2.2000 40 1 6.1995 -7.4763 -1.7185 41 1 4.2539 -9.6045 -2.7308 42 1 4.8297 -8.1948 -3.6551 43 1 2.5973 -7.7752 -2.6298 44 1 3.8367 -6.6740 -1.9862 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847363346.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:03 Heat of formation + Delta-G solvation = -45.624878 kcal Electronic energy + Delta-G solvation = -23124.324402 eV Core-core repulsion = 19882.397411 eV Total energy + Delta-G solvation = -3241.926991 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.45924 -38.62332 -35.84379 -34.27287 -33.80809 -32.31477 -31.29145 -30.77494 -28.35165 -26.76405 -23.73401 -23.50857 -22.76987 -22.33457 -20.33067 -19.84906 -19.07560 -18.00291 -16.33238 -15.85781 -15.75754 -15.11410 -14.98846 -14.62613 -14.42796 -14.27134 -13.92568 -13.85189 -13.55247 -13.23545 -13.01704 -12.63620 -12.24038 -11.90521 -11.87409 -11.81979 -11.64240 -11.36469 -11.00561 -10.92284 -10.88081 -10.82025 -10.73031 -10.32284 -10.23697 -10.05810 -9.30105 -9.25940 -8.67078 -8.59482 -8.41542 -7.63264 -6.09622 -4.15553 3.28603 3.34118 3.36660 3.49026 3.74264 4.09409 4.38456 4.51941 4.56225 4.70973 4.84008 4.96652 5.03381 5.10295 5.15197 5.25519 5.26474 5.28317 5.40897 5.43222 5.50863 5.56249 5.65419 5.70130 5.74583 5.82806 5.90004 5.97654 6.03664 6.05592 6.24153 6.31755 6.36905 6.89684 6.92281 7.15425 7.27255 7.62385 7.65627 7.67153 8.02139 8.17094 8.85123 9.09073 9.44062 9.59908 11.00730 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023070 B = 0.003844 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.413597 B = 7282.868393 C = 7667.565110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.539 4.539 8 H 0.062 0.938 9 C 0.268 3.732 10 N -0.731 5.731 11 C 0.692 3.308 12 O -0.606 6.606 13 N -0.740 5.740 14 C 0.176 3.824 15 H 0.088 0.912 16 C -0.135 4.135 17 C -0.115 4.115 18 C 0.055 3.945 19 N -0.527 5.527 20 C 0.055 3.945 21 C -0.118 4.118 22 C -0.122 4.122 23 C -0.113 4.113 24 C 0.081 3.919 25 H 0.050 0.950 26 H 0.265 0.735 27 H 0.023 0.977 28 H 0.023 0.977 29 H 0.385 0.615 30 H 0.397 0.603 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.030 0.970 37 H 0.073 0.927 38 H 0.030 0.970 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.107 -20.173 -0.618 23.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.578 4.578 8 H 0.080 0.920 9 C 0.147 3.853 10 N -0.383 5.383 11 C 0.392 3.608 12 O -0.486 6.486 13 N -0.397 5.397 14 C 0.069 3.931 15 H 0.105 0.895 16 C -0.174 4.174 17 C -0.153 4.153 18 C -0.072 4.072 19 N -0.253 5.253 20 C -0.073 4.073 21 C -0.156 4.156 22 C -0.159 4.159 23 C -0.151 4.151 24 C -0.028 4.028 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.217 0.783 30 H 0.232 0.768 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.048 0.952 37 H 0.092 0.908 38 H 0.048 0.952 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.960 -19.709 -0.613 22.560 hybrid contribution 0.988 0.211 0.036 1.011 sum 11.949 -19.497 -0.577 22.874 Atomic orbital electron populations 1.69982 1.06078 1.27153 1.49200 1.24939 0.94888 0.99343 0.94867 0.86430 0.79619 0.82768 0.78153 1.20527 1.21073 1.19793 1.21246 0.93257 0.90513 1.52774 0.92000 1.18932 0.87797 0.81148 0.97437 1.45687 1.10642 1.04501 1.77463 1.16192 0.85254 0.81113 0.78241 1.90851 1.14396 1.84304 1.59055 1.45087 1.09065 1.04174 1.81396 1.20673 0.95959 0.80749 0.95696 0.89452 1.22024 0.97859 1.01233 0.96320 1.21532 0.94876 1.00778 0.98129 1.22131 0.99376 0.96637 0.89104 1.62206 1.07880 1.53302 1.01884 1.22091 0.94834 0.94212 0.96135 1.21585 0.97437 1.02306 0.94224 1.21591 0.95635 0.99814 0.98890 1.21640 0.98829 1.00818 0.93849 1.21922 0.89814 0.97637 0.93389 0.93206 0.92547 0.95904 0.95899 0.78268 0.76814 0.91991 0.90580 0.91736 0.90682 0.90848 0.95164 0.90829 0.95185 0.91739 0.90847 0.92495 0.91673 0.91355 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -14.95 9.28 -34.44 -0.32 -15.27 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.27 7.33 5.43 -5.19 -0.03 7.31 16 10 N -0.73 -16.06 5.55 -66.41 -0.37 -16.43 16 11 C 0.69 14.51 8.52 -86.92 -0.74 13.77 16 12 O -0.61 -15.29 16.01 5.29 0.08 -15.20 16 13 N -0.74 -11.42 3.50 -58.59 -0.21 -11.63 16 14 C 0.18 2.39 2.20 -67.84 -0.15 2.24 16 15 H 0.09 1.36 7.58 -51.93 -0.39 0.97 16 16 C -0.14 -1.73 5.68 -26.64 -0.15 -1.88 16 17 C -0.12 -1.27 5.94 -26.70 -0.16 -1.42 16 18 C 0.06 0.52 5.33 -3.77 -0.02 0.50 16 19 N -0.53 -5.18 4.27 -226.29 -0.97 -6.15 16 20 C 0.06 0.46 5.33 -3.77 -0.02 0.44 16 21 C -0.12 -0.94 6.11 -26.70 -0.16 -1.10 16 22 C -0.12 -1.04 6.02 -26.65 -0.16 -1.20 16 23 C -0.11 -1.20 5.11 -26.65 -0.14 -1.33 16 24 C 0.08 0.87 1.95 -67.57 -0.13 0.74 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.39 7.38 8.34 -40.82 -0.34 7.04 16 30 H 0.40 5.51 7.87 -40.82 -0.32 5.19 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.95 7.65 -51.93 -0.40 0.55 16 35 H 0.07 0.62 8.03 -51.93 -0.42 0.20 16 36 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.07 0.55 8.03 -51.93 -0.42 0.14 16 38 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.08 0.92 7.14 -51.93 -0.37 0.55 16 LS Contribution 342.21 15.07 5.16 5.16 Total: -1.00 -31.84 342.21 -10.55 -42.39 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -7.69 Total: 7.08 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -2.28 Total: 4.46 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: -0.80 Total: -60.04 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: 0.08 Total: -15.20 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.84 -10.55 -42.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847363346.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.238 kcal (2) G-P(sol) polarization free energy of solvation -31.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds