Wall clock time and date at job start Tue Mar 31 2020 06:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46896 * 109.47693 * 2 1 4 4 C 1.46908 * 110.99648 * 287.85641 * 3 2 1 5 5 C 1.50701 * 109.46698 * 160.33462 * 4 3 2 6 6 H 1.08002 * 120.00326 * 4.70038 * 5 4 3 7 7 C 1.37881 * 119.99830 * 184.69725 * 5 4 3 8 8 N 1.31516 * 120.00015 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00098 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47182 * 90.00540 * 9 7 5 11 11 H 1.48508 * 109.47290 * 210.00112 * 9 7 5 12 12 H 1.48501 * 109.47181 * 330.00310 * 9 7 5 13 13 C 1.46894 * 111.00472 * 163.90388 * 3 2 1 14 14 N 1.46502 * 109.46801 * 278.95147 * 13 3 2 15 15 C 1.47205 * 125.41570 * 89.99994 * 14 13 3 16 16 C 1.53703 * 103.81050 * 182.13807 * 15 14 13 17 17 H 1.09003 * 111.43799 * 113.94635 * 16 15 14 18 18 C 1.53139 * 110.56798 * 238.37560 * 16 15 14 19 19 C 1.53176 * 108.75464 * 166.61081 * 18 16 15 20 20 C 1.52893 * 110.41091 * 296.88654 * 19 18 16 21 21 C 1.53555 * 109.73035 * 62.28445 * 20 19 18 22 22 N 1.46960 * 107.46715 * 308.36893 * 21 20 19 23 23 C 1.34176 * 125.41969 * 269.97509 * 14 13 3 24 24 O 1.21584 * 123.18494 * 4.28974 * 23 14 13 25 25 H 1.09000 * 109.47107 * 59.20414 * 1 2 3 26 26 H 1.09000 * 109.47817 * 179.20569 * 1 2 3 27 27 H 1.09003 * 109.47106 * 299.20582 * 1 2 3 28 28 H 1.09005 * 109.47145 * 239.99990 * 2 1 3 29 29 H 1.09005 * 109.47176 * 119.99963 * 2 1 3 30 30 H 1.08997 * 109.47110 * 280.32974 * 4 3 2 31 31 H 1.08992 * 109.47026 * 40.33386 * 4 3 2 32 32 H 0.96995 * 120.00355 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.47620 * 158.95312 * 13 3 2 34 34 H 1.08996 * 109.47209 * 38.94825 * 13 3 2 35 35 H 1.09008 * 110.56005 * 63.55837 * 15 14 13 36 36 H 1.08996 * 110.68715 * 300.78495 * 15 14 13 37 37 H 1.08998 * 109.59550 * 46.82733 * 18 16 15 38 38 H 1.08999 * 109.59224 * 286.38668 * 18 16 15 39 39 H 1.08998 * 109.31758 * 176.59451 * 19 18 16 40 40 H 1.08999 * 109.15709 * 57.07136 * 19 18 16 41 41 H 1.09006 * 109.42538 * 302.20744 * 20 19 18 42 42 H 1.08996 * 109.42590 * 182.37109 * 20 19 18 43 43 H 1.09001 * 109.87276 * 67.87963 * 21 20 19 44 44 H 1.08996 * 109.87165 * 188.85744 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7987 2.0214 -1.3055 5 6 1.8492 3.5194 -1.1488 6 1 2.1025 3.9542 -0.1932 7 6 1.5720 4.3348 -2.2256 8 7 1.2631 3.8053 -3.3891 9 14 1.6339 6.1916 -2.0313 10 1 3.0046 6.6757 -2.3346 11 1 0.6684 6.8199 -2.9687 12 1 1.2777 6.5555 -0.6363 13 6 3.4374 1.4420 0.3802 14 7 3.5549 1.3733 1.8389 15 6 3.6880 0.1369 2.6267 16 6 3.7166 0.6304 4.0820 17 1 2.8370 0.2975 4.6330 18 6 5.0091 0.1887 4.7746 19 6 5.1560 0.9670 6.0857 20 6 5.2941 2.4635 5.8049 21 6 4.0234 2.9810 5.1153 22 7 3.7576 2.1051 3.9656 23 6 3.5588 2.4272 2.6692 24 8 3.3872 3.5708 2.2938 25 1 -0.3633 0.5261 -0.8828 26 1 -0.3635 -1.0275 -0.0142 27 1 -0.3633 0.5015 0.8970 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.5748 1.7025 -2.0012 31 1 0.8223 1.7291 -1.6915 32 1 1.0678 4.3789 -4.1465 33 1 3.8718 2.3762 0.0244 34 1 3.9677 0.6012 -0.0670 35 1 4.6167 -0.3771 2.3785 36 1 2.8331 -0.5188 2.4616 37 1 5.8607 0.3987 4.1276 38 1 4.9633 -0.8794 4.9869 39 1 6.0416 0.6165 6.6158 40 1 4.2746 0.7960 6.7038 41 1 6.1533 2.6329 5.1559 42 1 5.4396 2.9968 6.7443 43 1 3.1841 2.9453 5.8100 44 1 4.1778 4.0043 4.7735 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872565064.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:46 Heat of formation + Delta-G solvation = -4.201253 kcal Electronic energy + Delta-G solvation = -23451.513126 eV Core-core repulsion = 20211.382398 eV Total energy + Delta-G solvation = -3240.130728 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.88134 -37.47110 -36.61979 -35.11864 -32.54626 -32.28025 -31.44333 -29.77314 -27.09428 -26.97323 -25.04406 -23.09395 -22.65135 -22.19450 -20.81199 -19.99682 -19.07391 -16.52930 -16.48201 -16.39613 -15.56823 -14.89763 -14.75612 -14.61341 -14.31377 -13.99792 -13.87945 -13.55307 -13.32624 -13.28238 -12.89856 -12.70232 -12.23210 -12.04791 -11.75571 -11.47914 -11.27540 -11.22917 -11.14634 -10.95287 -10.77239 -10.74189 -10.73107 -10.50386 -10.20958 -9.71962 -9.48090 -9.11220 -8.60345 -8.31156 -8.12669 -7.25953 -5.89874 -3.88752 2.70992 3.45174 3.49788 3.60802 3.62751 4.02442 4.38561 4.52960 4.58084 4.63748 4.80345 4.93517 5.02703 5.10935 5.17395 5.35517 5.40112 5.45684 5.49030 5.56525 5.62351 5.70624 5.73146 5.76073 5.83598 5.89693 5.91944 6.06917 6.14168 6.23194 6.31138 6.46106 6.57870 6.81915 7.05874 7.14224 7.25286 7.39134 7.97095 8.06361 8.17133 8.25775 8.63054 9.10030 9.26941 9.75977 11.20803 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019453 B = 0.005211 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.046813 B = 5372.271830 C = 6455.130076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.052 3.948 3 N -0.549 5.549 4 C 0.198 3.802 5 C -0.500 4.500 6 H 0.073 0.927 7 C 0.054 3.946 8 N -0.905 5.905 9 Si 0.897 3.103 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.272 1.272 13 C 0.322 3.678 14 N -0.618 5.618 15 C 0.096 3.904 16 C 0.119 3.881 17 H 0.086 0.914 18 C -0.126 4.126 19 C -0.117 4.117 20 C -0.138 4.138 21 C 0.158 3.842 22 N -0.644 5.644 23 C 0.704 3.296 24 O -0.563 6.563 25 H 0.062 0.938 26 H 0.044 0.956 27 H 0.055 0.945 28 H 0.023 0.977 29 H 0.054 0.946 30 H -0.011 1.011 31 H 0.039 0.961 32 H 0.259 0.741 33 H 0.105 0.895 34 H 0.044 0.956 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.527 -11.480 17.794 22.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.076 4.076 3 N -0.276 5.276 4 C 0.073 3.927 5 C -0.539 4.539 6 H 0.091 0.909 7 C -0.146 4.146 8 N -0.546 5.546 9 Si 0.725 3.275 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.196 1.196 13 C 0.111 3.889 14 N -0.357 5.357 15 C -0.028 4.028 16 C 0.014 3.986 17 H 0.104 0.896 18 C -0.164 4.164 19 C -0.154 4.154 20 C -0.176 4.176 21 C 0.035 3.965 22 N -0.385 5.385 23 C 0.407 3.593 24 O -0.437 6.437 25 H 0.081 0.919 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.041 0.959 29 H 0.072 0.928 30 H 0.007 0.993 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.123 0.877 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.082 0.918 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.097 -10.391 17.664 21.688 hybrid contribution 0.349 0.325 -0.534 0.715 sum 7.446 -10.066 17.131 21.218 Atomic orbital electron populations 1.21730 0.95480 0.99794 1.02990 1.22065 0.96267 0.90704 0.98569 1.61865 1.16640 1.14374 1.34671 1.19736 0.96555 0.94502 0.81910 1.21351 1.45236 0.90448 0.96836 0.90924 1.24951 0.95551 0.98904 0.95179 1.69963 1.48511 1.35130 1.00986 0.86502 0.77553 0.85465 0.77998 1.20853 1.21546 1.19643 1.21569 0.90155 1.01892 0.75269 1.47563 1.76570 1.04954 1.06617 1.22348 1.02092 0.89258 0.89140 1.22092 0.98418 0.82215 0.95847 0.89587 1.22012 0.97338 0.99908 0.97185 1.21435 1.01962 0.95025 0.96998 1.22016 0.98577 0.96246 1.00761 1.21309 0.96043 0.93831 0.85271 1.47849 1.77579 1.06074 1.07000 1.16091 0.77635 0.85077 0.80539 1.90969 1.55224 1.19465 1.78051 0.91887 0.93731 0.92597 0.95913 0.92798 0.99309 0.94261 0.93168 0.87717 0.93815 0.90779 0.90455 0.91168 0.90815 0.91757 0.91826 0.91504 0.90803 0.91827 0.89431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.99 37.15 0.37 -2.09 16 2 C 0.05 0.93 5.53 -3.83 -0.02 0.91 16 3 N -0.55 -12.13 4.48 -239.99 -1.07 -13.21 16 4 C 0.20 5.23 4.54 -4.97 -0.02 5.21 16 5 C -0.50 -14.90 8.52 -34.44 -0.29 -15.20 16 6 H 0.07 2.31 7.81 -52.49 -0.41 1.90 16 7 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.91 -27.68 13.29 55.43 0.74 -26.94 16 9 Si 0.90 23.46 29.54 -169.99 -5.02 18.44 16 10 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 11 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 12 H -0.27 -7.24 7.11 56.52 0.40 -6.84 16 13 C 0.32 6.44 5.56 -63.32 -0.35 6.09 16 14 N -0.62 -10.88 3.15 -182.04 -0.57 -11.45 16 15 C 0.10 1.16 6.91 -3.29 -0.02 1.14 16 16 C 0.12 1.30 3.89 -66.68 -0.26 1.04 16 17 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 18 C -0.13 -1.02 5.30 -26.57 -0.14 -1.16 16 19 C -0.12 -0.86 5.78 -26.70 -0.15 -1.02 16 20 C -0.14 -1.20 6.07 -26.50 -0.16 -1.36 16 21 C 0.16 1.86 6.98 -3.50 -0.02 1.84 16 22 N -0.64 -9.42 3.07 -169.57 -0.52 -9.94 16 23 C 0.70 13.89 8.37 -87.21 -0.73 13.16 16 24 O -0.56 -14.15 17.30 5.29 0.09 -14.06 16 25 H 0.06 1.24 6.52 -51.93 -0.34 0.90 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.02 0.40 8.05 -51.93 -0.42 -0.02 16 29 H 0.05 0.83 5.58 -51.93 -0.29 0.54 16 30 H -0.01 -0.30 8.00 -51.93 -0.42 -0.71 16 31 H 0.04 1.10 6.25 -51.93 -0.32 0.78 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.10 2.46 7.07 -51.93 -0.37 2.09 16 34 H 0.04 0.76 7.92 -51.93 -0.41 0.35 16 35 H 0.07 0.74 7.66 -51.92 -0.40 0.35 16 36 H 0.08 0.87 6.27 -51.93 -0.33 0.55 16 37 H 0.07 0.64 8.02 -51.93 -0.42 0.22 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.09 1.17 7.97 -51.93 -0.41 0.76 16 LS Contribution 343.76 15.07 5.18 5.18 Total: -1.00 -35.38 343.76 -10.56 -45.94 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -7.47 Total: -4.05 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: -1.91 Total: 10.09 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: -1.43 Total: -61.54 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.09 Total: -14.06 kcal Atomic # 14 Polarization: 23.46 SS G_CDS: -5.02 Total: 18.44 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.38 -10.56 -45.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872565064.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.737 kcal (2) G-P(sol) polarization free energy of solvation -35.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds