Wall clock time and date at job start Tue Mar 31 2020 06:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46898 * 109.47158 * 2 1 4 4 C 1.46907 * 110.99994 * 199.60046 * 3 2 1 5 5 C 1.50707 * 109.46905 * 66.04541 * 4 3 2 6 6 H 1.07997 * 119.99975 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00004 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00070 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99994 * 180.02562 * 7 5 4 10 10 H 1.48490 * 109.47213 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46979 * 120.00432 * 9 7 5 12 12 H 1.48506 * 109.46876 * 239.99834 * 9 7 5 13 13 C 1.46895 * 111.00049 * 75.65046 * 3 2 1 14 14 N 1.46504 * 109.47148 * 204.58125 * 13 3 2 15 15 C 1.47196 * 125.41007 * 79.75208 * 14 13 3 16 16 C 1.53692 * 103.82861 * 177.64894 * 15 14 13 17 17 H 1.09000 * 111.42649 * 246.51259 * 16 15 14 18 18 C 1.53150 * 110.56453 * 122.11515 * 16 15 14 19 19 C 1.53713 * 108.46666 * 195.15338 * 18 16 15 20 20 C 1.52893 * 111.17241 * 61.84647 * 19 18 16 21 21 C 1.53562 * 109.73402 * 298.02886 * 20 19 18 22 22 N 1.46995 * 107.38720 * 51.57783 * 21 20 19 23 23 C 1.33415 * 128.24873 * 126.82202 * 22 21 20 24 24 O 1.21592 * 123.19620 * 10.44457 * 23 22 21 25 25 H 1.09001 * 109.47296 * 62.22379 * 1 2 3 26 26 H 1.08997 * 109.47412 * 182.22574 * 1 2 3 27 27 H 1.09008 * 109.46676 * 302.22768 * 1 2 3 28 28 H 1.09000 * 109.47047 * 239.99857 * 2 1 3 29 29 H 1.09003 * 109.47366 * 120.00031 * 2 1 3 30 30 H 1.09002 * 109.47200 * 186.04207 * 4 3 2 31 31 H 1.09000 * 109.47425 * 306.05066 * 4 3 2 32 32 H 0.96998 * 120.00176 * 180.02562 * 8 7 5 33 33 H 1.08995 * 109.47213 * 324.57438 * 13 3 2 34 34 H 1.08995 * 109.47614 * 84.58138 * 13 3 2 35 35 H 1.09004 * 110.55429 * 296.23329 * 15 14 13 36 36 H 1.09002 * 110.55360 * 59.05720 * 15 14 13 37 37 H 1.09003 * 109.59276 * 314.11242 * 18 16 15 38 38 H 1.09008 * 109.59006 * 74.54945 * 18 16 15 39 39 H 1.09003 * 108.65762 * 301.51501 * 19 18 16 40 40 H 1.08995 * 109.05367 * 182.44379 * 19 18 16 41 41 H 1.08995 * 109.42679 * 177.94521 * 20 19 18 42 42 H 1.08999 * 109.42236 * 58.10404 * 20 19 18 43 43 H 1.09007 * 109.87300 * 292.11235 * 21 20 19 44 44 H 1.09000 * 109.87637 * 171.05456 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4132 1.4506 -0.4601 5 6 3.4832 1.0456 -1.9100 6 1 2.5824 0.7677 -2.4371 7 6 4.6969 1.0309 -2.5639 8 7 5.7936 1.3698 -1.9222 9 14 4.7834 0.5295 -4.3613 10 1 3.4208 0.1964 -4.8484 11 1 5.3355 1.6517 -5.1621 12 1 5.6631 -0.6586 -4.5019 13 6 1.8747 1.9946 1.3286 14 7 1.7977 3.4512 1.1918 15 6 0.5968 4.2092 0.8048 16 6 1.0499 5.6762 0.8750 17 1 0.5351 6.2143 1.6709 18 6 0.8559 6.3645 -0.4793 19 6 1.6561 7.6769 -0.4775 20 6 3.1517 7.4115 -0.3028 21 6 3.4033 6.7338 1.0520 22 7 2.5006 5.5769 1.1387 23 6 2.8093 4.3065 1.4049 24 8 3.9046 3.9563 1.8000 25 1 -0.3634 0.4789 -0.9093 26 1 -0.3634 -1.0268 0.0399 27 1 -0.3633 0.5481 0.8694 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.7849 2.4693 -0.3491 31 1 4.0250 0.7736 0.1361 32 1 6.6475 1.3598 -2.3824 33 1 0.9640 1.6255 1.8003 34 1 2.7349 1.7325 1.9445 35 1 0.2916 3.9511 -0.2093 36 1 -0.2151 4.0253 1.5084 37 1 1.2314 5.7199 -1.2741 38 1 -0.2035 6.5655 -0.6388 39 1 1.3023 8.2999 0.3440 40 1 1.4900 8.1963 -1.4213 41 1 3.6945 8.3559 -0.3421 42 1 3.5003 6.7602 -1.1043 43 1 3.1892 7.4322 1.8611 44 1 4.4394 6.4008 1.1131 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872565065.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:48 Heat of formation + Delta-G solvation = -5.735027 kcal Electronic energy + Delta-G solvation = -23719.555862 eV Core-core repulsion = 20479.358625 eV Total energy + Delta-G solvation = -3240.197237 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.91969 -37.40119 -36.51352 -35.08634 -32.61173 -32.24071 -31.27631 -29.73456 -27.19651 -26.90667 -24.91779 -23.09197 -22.38691 -22.18142 -20.83071 -19.80355 -19.10053 -16.64851 -16.46537 -15.99296 -15.61228 -15.05285 -14.63980 -14.45620 -14.22425 -14.09170 -13.86395 -13.44598 -13.10866 -12.96013 -12.78654 -12.58637 -12.23948 -12.02235 -11.95284 -11.57843 -11.23960 -11.17011 -11.00223 -10.95659 -10.70472 -10.63386 -10.58544 -10.49203 -10.14877 -9.77519 -9.55345 -9.13060 -8.58311 -8.35873 -8.06921 -7.25015 -5.92247 -3.94979 2.79291 3.33862 3.40872 3.45137 3.69428 4.08369 4.47755 4.53443 4.71543 4.84089 4.96534 5.03830 5.11865 5.24215 5.33387 5.41511 5.49516 5.54125 5.68344 5.72170 5.76222 5.80416 5.87258 5.90623 5.97034 6.00736 6.04686 6.09842 6.15240 6.32872 6.36891 6.45982 6.66231 6.78493 7.09502 7.22248 7.45677 7.53802 7.84743 8.07785 8.21233 8.29247 8.60345 9.12349 9.13894 9.68047 11.17715 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014001 B = 0.006322 C = 0.005244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.309251 B = 4428.221970 C = 5337.975209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.060 3.940 3 N -0.553 5.553 4 C 0.198 3.802 5 C -0.508 4.508 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.891 5.891 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.312 3.688 14 N -0.617 5.617 15 C 0.104 3.896 16 C 0.120 3.880 17 H 0.085 0.915 18 C -0.128 4.128 19 C -0.114 4.114 20 C -0.139 4.139 21 C 0.155 3.845 22 N -0.634 5.634 23 C 0.706 3.294 24 O -0.579 6.579 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.043 0.957 28 H 0.089 0.911 29 H 0.020 0.980 30 H 0.036 0.964 31 H -0.011 1.011 32 H 0.259 0.741 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.110 10.422 5.643 17.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.068 4.068 3 N -0.280 5.280 4 C 0.073 3.927 5 C -0.546 4.546 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.531 5.531 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.100 3.900 14 N -0.355 5.355 15 C -0.021 4.021 16 C 0.015 3.985 17 H 0.103 0.897 18 C -0.167 4.167 19 C -0.152 4.152 20 C -0.177 4.177 21 C 0.033 3.967 22 N -0.374 5.374 23 C 0.408 3.592 24 O -0.456 6.456 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.107 0.893 29 H 0.038 0.962 30 H 0.054 0.946 31 H 0.007 0.993 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.483 10.453 5.555 17.203 hybrid contribution 0.590 -0.611 -0.616 1.049 sum -11.893 9.842 4.939 16.208 Atomic orbital electron populations 1.21808 0.96590 1.00154 1.01482 1.21896 0.94026 0.89610 1.01310 1.61899 1.26277 1.16883 1.22982 1.19718 0.80608 0.97415 0.94949 1.21182 0.93122 1.44757 0.95582 0.92015 1.25005 0.95755 0.95760 0.98125 1.70016 0.98359 1.48400 1.36296 0.86513 0.77952 0.78061 0.85292 1.19749 1.21150 1.21139 1.21503 1.00368 0.76424 0.91690 1.47286 1.10559 1.05878 1.71822 1.22238 0.89136 0.88736 1.01942 1.22110 0.82632 0.96120 0.97647 0.89676 1.22119 1.00388 0.97345 0.96817 1.21492 0.94966 0.97003 1.01752 1.21996 0.96558 1.00913 0.98266 1.21371 0.94043 0.85051 0.96281 1.47360 1.07916 1.07402 1.74687 1.15677 0.84045 0.80932 0.78513 1.90939 1.22498 1.79425 1.52765 0.92323 0.93326 0.93828 0.89269 0.96172 0.94591 0.99297 0.93101 0.90761 0.92377 0.89780 0.90957 0.90572 0.90614 0.92188 0.91745 0.90791 0.90973 0.91915 0.89295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 10.04 37.16 0.37 -1.73 16 2 C 0.06 1.15 5.48 -3.83 -0.02 1.12 16 3 N -0.55 -12.11 4.53 -239.98 -1.09 -13.19 16 4 C 0.20 5.49 4.57 -4.97 -0.02 5.47 16 5 C -0.51 -14.73 8.23 -34.44 -0.28 -15.01 16 6 H 0.06 1.75 7.31 -52.49 -0.38 1.37 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.89 -27.98 13.29 55.43 0.74 -27.25 16 9 Si 0.89 22.25 29.54 -169.99 -5.02 17.22 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 C 0.31 6.00 5.69 -63.32 -0.36 5.64 16 14 N -0.62 -11.41 3.10 -182.56 -0.57 -11.98 16 15 C 0.10 1.40 7.30 -3.30 -0.02 1.38 16 16 C 0.12 1.46 3.90 -66.79 -0.26 1.20 16 17 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 18 C -0.13 -1.38 5.42 -26.28 -0.14 -1.53 16 19 C -0.11 -1.12 5.76 -26.42 -0.15 -1.27 16 20 C -0.14 -1.62 6.10 -26.49 -0.16 -1.78 16 21 C 0.15 2.12 6.94 -3.48 -0.02 2.09 16 22 N -0.63 -10.27 3.02 -170.20 -0.51 -10.78 16 23 C 0.71 14.67 7.62 -88.67 -0.68 14.00 16 24 O -0.58 -14.82 16.67 5.28 0.09 -14.73 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.04 0.58 6.73 -51.92 -0.35 0.23 16 28 H 0.09 1.90 6.58 -51.93 -0.34 1.56 16 29 H 0.02 0.37 8.00 -51.93 -0.42 -0.05 16 30 H 0.04 1.13 6.95 -51.93 -0.36 0.77 16 31 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 32 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 33 H 0.07 1.17 6.43 -51.93 -0.33 0.83 16 34 H 0.06 1.26 7.47 -51.93 -0.39 0.88 16 35 H 0.08 1.18 7.64 -51.93 -0.40 0.79 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 1.03 7.99 -51.93 -0.41 0.62 16 38 H 0.08 0.63 8.14 -51.92 -0.42 0.20 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 1.41 7.87 -51.93 -0.41 1.00 16 LS Contribution 344.81 15.07 5.20 5.20 Total: -1.00 -35.67 344.81 -10.60 -46.26 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -7.58 Total: -1.86 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: -1.85 Total: 11.11 kcal Atomic # 7 Polarization: -61.77 SS G_CDS: -1.43 Total: -63.20 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: 0.09 Total: -14.73 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.67 -10.60 -46.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872565065.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.528 kcal (2) G-P(sol) polarization free energy of solvation -35.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds