Wall clock time and date at job start Tue Mar 31 2020 05:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47212 * 2 1 4 4 C 1.50701 * 109.47584 * 239.99755 * 2 1 3 5 5 H 1.07994 * 120.00035 * 239.73249 * 4 2 1 6 6 C 1.37875 * 119.99632 * 59.99739 * 4 2 1 7 7 N 1.31513 * 120.00203 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99799 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47557 * 60.00123 * 8 6 4 10 10 H 1.48506 * 109.47188 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47268 * 300.00046 * 8 6 4 12 12 N 1.46904 * 109.46894 * 119.99587 * 2 1 3 13 13 C 1.46892 * 111.00170 * 290.22533 * 12 2 1 14 14 C 1.46905 * 110.99611 * 54.17910 * 12 2 1 15 15 N 1.46501 * 109.46759 * 155.52014 * 14 12 2 16 16 C 1.47199 * 125.40649 * 90.00242 * 15 14 12 17 17 C 1.53702 * 103.82447 * 177.61520 * 16 15 14 18 18 H 1.08999 * 111.42439 * 246.51956 * 17 16 15 19 19 C 1.53149 * 110.56169 * 122.12191 * 17 16 15 20 20 C 1.53725 * 108.45947 * 195.14394 * 19 17 16 21 21 C 1.52879 * 111.16636 * 61.85320 * 20 19 17 22 22 C 1.53565 * 109.73683 * 298.02239 * 21 20 19 23 23 N 1.46998 * 107.38928 * 51.58442 * 22 21 20 24 24 C 1.33405 * 128.25288 * 126.81346 * 23 22 21 25 25 O 1.21589 * 123.19637 * 10.41101 * 24 23 22 26 26 H 1.08997 * 109.47396 * 293.95230 * 1 2 3 27 27 H 1.09001 * 109.46445 * 53.95125 * 1 2 3 28 28 H 1.09001 * 109.47051 * 173.94922 * 1 2 3 29 29 H 0.97000 * 119.99882 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.47512 * 59.99904 * 13 12 2 31 31 H 1.09000 * 109.47013 * 180.02562 * 13 12 2 32 32 H 1.09001 * 109.46915 * 299.99663 * 13 12 2 33 33 H 1.09005 * 109.46555 * 275.51486 * 14 12 2 34 34 H 1.08999 * 109.47595 * 35.52006 * 14 12 2 35 35 H 1.09001 * 110.55432 * 296.19559 * 16 15 14 36 36 H 1.09004 * 110.55987 * 59.02814 * 16 15 14 37 37 H 1.09003 * 109.59305 * 314.10027 * 19 17 16 38 38 H 1.09004 * 109.59304 * 74.54492 * 19 17 16 39 39 H 1.09001 * 108.65285 * 301.51545 * 20 19 17 40 40 H 1.09001 * 109.04899 * 182.44527 * 20 19 17 41 41 H 1.09003 * 109.42962 * 177.93956 * 21 20 19 42 42 H 1.09002 * 109.43115 * 58.10819 * 21 20 19 43 43 H 1.08997 * 109.86962 * 292.10933 * 22 21 20 44 44 H 1.09004 * 109.93430 * 171.08742 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6569 -1.5859 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0078 9 1 1.8261 -2.5203 -4.0077 10 1 1.8271 -0.4200 -5.2204 11 1 3.8066 -1.1209 -4.0080 12 7 2.0196 -0.6924 1.1995 13 6 1.7481 0.0949 2.4096 14 6 1.4383 -2.0374 1.3051 15 7 2.3223 -2.8902 2.1035 16 6 2.2552 -3.0570 3.5645 17 6 3.3515 -4.0910 3.8668 18 1 2.9270 -5.0262 4.2319 19 6 4.3726 -3.5190 4.8546 20 6 5.6238 -4.4119 4.8328 21 6 6.2725 -4.4195 3.4485 22 6 5.2919 -5.0007 2.4195 23 7 4.0225 -4.2735 2.5628 24 6 3.3179 -3.6477 1.6185 25 8 3.5573 -3.7511 0.4309 26 1 -0.3634 0.4172 0.9391 27 1 -0.3632 0.6048 -0.8309 28 1 -0.3633 -1.0219 -0.1083 29 1 0.7096 1.1616 -3.4844 30 1 0.6737 0.2492 2.5092 31 1 2.1212 -0.4405 3.2827 32 1 2.2485 1.0603 2.3347 33 1 0.4622 -1.9745 1.7862 34 1 1.3253 -2.4637 0.3083 35 1 2.4692 -2.1141 4.0676 36 1 1.2778 -3.4374 3.8618 37 1 4.6502 -2.5099 4.5499 38 1 3.9400 -3.4952 5.8548 39 1 5.3319 -5.4276 5.0999 40 1 6.3401 -4.0384 5.5646 41 1 7.1750 -5.0302 3.4744 42 1 6.5337 -3.4000 3.1648 43 1 5.1353 -6.0615 2.6149 44 1 5.6856 -4.8638 1.4123 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872576733.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:42 Heat of formation + Delta-G solvation = 2.515406 kcal Electronic energy + Delta-G solvation = -23748.763128 eV Core-core repulsion = 20508.923656 eV Total energy + Delta-G solvation = -3239.839471 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.97821 -37.53665 -36.69796 -35.18810 -32.76253 -32.17258 -31.14649 -28.71655 -27.21673 -26.47463 -25.15397 -23.91925 -22.89784 -22.30017 -20.83407 -19.47666 -18.96551 -16.67339 -16.49431 -15.93121 -15.63437 -14.85480 -14.75914 -14.57593 -14.21992 -13.95447 -13.69607 -13.52756 -13.24996 -13.00902 -12.85386 -12.56280 -12.22973 -11.85150 -11.79688 -11.47372 -11.28460 -11.09284 -10.95407 -10.84408 -10.73184 -10.67725 -10.60738 -10.42885 -10.04383 -9.82441 -9.49421 -8.88201 -8.59931 -8.30876 -8.06529 -7.19988 -5.90914 -3.92378 2.76328 3.47022 3.47466 3.56741 3.68287 4.03586 4.39692 4.56051 4.58519 4.69734 4.84113 4.97062 5.09260 5.20109 5.21673 5.39513 5.42008 5.45780 5.56781 5.63919 5.66053 5.73566 5.79813 5.89323 5.91523 5.99503 6.11116 6.19804 6.36301 6.41726 6.53252 6.75198 6.82451 7.02302 7.12791 7.28562 7.44490 7.69953 7.98837 8.09400 8.16003 8.40625 8.64829 9.11388 9.22806 9.73466 11.16750 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021769 B = 0.005342 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.927685 B = 5240.038580 C = 6098.908511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.217 3.783 3 H 0.041 0.959 4 C -0.500 4.500 5 H 0.072 0.928 6 C 0.059 3.941 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.291 1.291 11 H -0.277 1.277 12 N -0.549 5.549 13 C 0.027 3.973 14 C 0.321 3.679 15 N -0.621 5.621 16 C 0.094 3.906 17 C 0.120 3.880 18 H 0.086 0.914 19 C -0.127 4.127 20 C -0.115 4.115 21 C -0.137 4.137 22 C 0.154 3.846 23 N -0.638 5.638 24 C 0.706 3.294 25 O -0.569 6.569 26 H 0.008 0.992 27 H 0.087 0.913 28 H 0.030 0.970 29 H 0.259 0.741 30 H 0.019 0.981 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.043 0.957 34 H 0.110 0.890 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.579 -9.590 18.116 21.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.111 3.889 3 H 0.059 0.941 4 C -0.538 4.538 5 H 0.090 0.910 6 C -0.141 4.141 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.217 1.217 11 H -0.203 1.203 12 N -0.274 5.274 13 C -0.122 4.122 14 C 0.110 3.890 15 N -0.361 5.361 16 C -0.030 4.030 17 C 0.015 3.985 18 H 0.104 0.896 19 C -0.165 4.165 20 C -0.153 4.153 21 C -0.176 4.176 22 C 0.032 3.968 23 N -0.378 5.378 24 C 0.408 3.592 25 O -0.445 6.445 26 H 0.027 0.973 27 H 0.106 0.894 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.037 0.963 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.128 0.872 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.143 -9.565 17.114 20.268 hybrid contribution -0.577 -0.160 -0.507 0.785 sum 4.565 -9.725 16.607 19.779 Atomic orbital electron populations 1.22443 1.00611 1.00308 0.99586 1.19287 0.89673 0.94419 0.85510 0.94098 1.21245 1.30336 1.12860 0.89375 0.90987 1.24892 0.95188 0.95049 0.98992 1.69895 1.37480 1.23181 1.23388 0.86556 0.79382 0.79703 0.81770 1.20260 1.21652 1.20279 1.61987 1.60047 1.02104 1.03306 1.22364 0.98163 0.98320 0.93374 1.21616 0.86032 0.85685 0.95617 1.47637 1.35957 1.46322 1.06168 1.22367 0.98378 0.98663 0.83602 1.22070 0.92450 0.98094 0.85837 0.89589 1.22107 0.95481 1.00121 0.98809 1.21500 0.96887 0.99938 0.96991 1.21986 0.98147 1.02378 0.95055 1.21358 0.81018 0.94098 1.00355 1.47419 1.24776 1.58030 1.07596 1.15685 0.79867 0.78832 0.84806 1.90958 1.71622 1.67857 1.14021 0.97270 0.89411 0.95117 0.93134 0.96312 0.93456 0.92324 0.93971 0.87170 0.90565 0.90767 0.91013 0.90615 0.92023 0.91764 0.90767 0.91287 0.91895 0.89284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.08 8.20 37.16 0.30 -3.77 16 2 C 0.22 5.58 2.30 -68.86 -0.16 5.43 16 3 H 0.04 1.15 8.07 -51.93 -0.42 0.73 16 4 C -0.50 -14.46 7.62 -34.44 -0.26 -14.72 16 5 H 0.07 2.24 7.38 -52.49 -0.39 1.85 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.90 -26.28 11.39 55.43 0.63 -25.65 16 8 Si 0.90 23.07 29.54 -169.99 -5.02 18.05 16 9 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 10 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 11 H -0.28 -7.21 7.11 56.52 0.40 -6.80 16 12 N -0.55 -12.19 4.80 -240.19 -1.15 -13.35 16 13 C 0.03 0.48 9.22 60.06 0.55 1.03 16 14 C 0.32 6.59 4.30 -63.31 -0.27 6.32 16 15 N -0.62 -11.20 3.14 -182.55 -0.57 -11.78 16 16 C 0.09 1.17 6.96 -3.30 -0.02 1.15 16 17 C 0.12 1.32 3.90 -66.79 -0.26 1.06 16 18 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 19 C -0.13 -1.11 5.42 -26.28 -0.14 -1.26 16 20 C -0.12 -0.92 5.76 -26.42 -0.15 -1.07 16 21 C -0.14 -1.31 6.10 -26.50 -0.16 -1.47 16 22 C 0.15 1.87 6.94 -3.48 -0.02 1.84 16 23 N -0.64 -9.48 3.02 -170.20 -0.51 -9.99 16 24 C 0.71 14.09 8.32 -88.68 -0.74 13.36 16 25 O -0.57 -14.33 17.13 5.29 0.09 -14.24 16 26 H 0.01 0.18 6.45 -51.93 -0.34 -0.15 16 27 H 0.09 2.33 6.26 -51.93 -0.32 2.00 16 28 H 0.03 0.71 7.11 -51.93 -0.37 0.34 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.02 0.32 6.49 -51.93 -0.34 -0.01 16 31 H 0.05 0.73 5.92 -51.93 -0.31 0.42 16 32 H 0.06 1.06 8.12 -51.93 -0.42 0.63 16 33 H 0.04 0.78 7.64 -51.93 -0.40 0.38 16 34 H 0.11 2.68 6.15 -51.93 -0.32 2.36 16 35 H 0.08 0.89 5.89 -51.93 -0.31 0.58 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.76 7.99 -51.93 -0.41 0.35 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.09 1.25 7.87 -51.93 -0.41 0.84 16 LS Contribution 335.44 15.07 5.06 5.06 Total: -1.00 -33.84 335.44 -10.18 -44.02 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -7.26 Total: -1.63 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: -1.43 Total: 9.50 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -1.61 Total: -60.76 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.09 Total: -14.24 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.84 -10.18 -44.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872576733.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.532 kcal (2) G-P(sol) polarization free energy of solvation -33.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds