Wall clock time and date at job start Tue Mar 31 2020 05:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47235 * 2 1 4 4 C 1.50706 * 109.47304 * 120.00364 * 2 1 3 5 5 H 1.07998 * 120.00168 * 119.99387 * 4 2 1 6 6 C 1.37880 * 119.99248 * 299.99690 * 4 2 1 7 7 N 1.31509 * 120.00492 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99607 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47166 * 89.99890 * 8 6 4 10 10 H 1.48491 * 109.47208 * 210.00081 * 8 6 4 11 11 H 1.48505 * 109.47202 * 330.00211 * 8 6 4 12 12 N 1.46898 * 109.46948 * 239.99685 * 2 1 3 13 13 C 1.46901 * 111.00443 * 306.04832 * 12 2 1 14 14 C 1.46906 * 110.99820 * 70.00145 * 12 2 1 15 15 N 1.46497 * 109.47129 * 154.99908 * 14 12 2 16 16 C 1.47199 * 125.41053 * 90.00166 * 15 14 12 17 17 C 1.53693 * 103.82950 * 177.61716 * 16 15 14 18 18 H 1.08992 * 111.42787 * 246.51833 * 17 16 15 19 19 C 1.53155 * 110.56223 * 122.12235 * 17 16 15 20 20 C 1.53716 * 108.46242 * 195.14425 * 19 17 16 21 21 C 1.52894 * 111.16580 * 61.85454 * 20 19 17 22 22 C 1.53563 * 109.73550 * 298.02367 * 21 20 19 23 23 N 1.46995 * 107.38944 * 51.58155 * 22 21 20 24 24 C 1.33412 * 128.25264 * 126.81101 * 23 22 21 25 25 O 1.21588 * 123.19282 * 10.41589 * 24 23 22 26 26 H 1.09007 * 109.46628 * 299.99980 * 1 2 3 27 27 H 1.08991 * 109.47344 * 60.00022 * 1 2 3 28 28 H 1.09002 * 109.47146 * 180.02562 * 1 2 3 29 29 H 0.97001 * 120.00000 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.47401 * 183.95136 * 13 12 2 31 31 H 1.09001 * 109.46874 * 63.95149 * 13 12 2 32 32 H 1.09004 * 109.46970 * 303.95282 * 13 12 2 33 33 H 1.08997 * 109.46815 * 274.99867 * 14 12 2 34 34 H 1.09004 * 109.46816 * 34.99910 * 14 12 2 35 35 H 1.09008 * 110.55247 * 296.20575 * 16 15 14 36 36 H 1.09004 * 110.55434 * 59.02650 * 16 15 14 37 37 H 1.09006 * 109.59145 * 314.10471 * 19 17 16 38 38 H 1.09000 * 109.58870 * 74.54391 * 19 17 16 39 39 H 1.09003 * 108.65436 * 301.52365 * 20 19 17 40 40 H 1.08994 * 109.05256 * 182.45085 * 20 19 17 41 41 H 1.08996 * 109.42422 * 177.94378 * 21 20 19 42 42 H 1.08997 * 109.42612 * 58.10490 * 21 20 19 43 43 H 1.09003 * 109.87049 * 292.11112 * 22 21 20 44 44 H 1.09001 * 109.93051 * 171.08426 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3226 -1.1195 4.0079 9 1 3.6306 -0.5440 4.4118 10 1 1.3446 -0.9490 5.1122 11 1 2.4881 -2.5654 3.7122 12 7 2.0196 -0.6926 -1.1994 13 6 1.4343 -2.0355 -1.3078 14 6 1.7529 0.0972 -2.4090 15 7 2.7155 -0.2664 -3.4518 16 6 2.5290 -1.3311 -4.4510 17 6 3.7926 -1.2433 -5.3215 18 1 3.5556 -0.9237 -6.3363 19 6 4.5419 -2.5790 -5.3183 20 6 5.9585 -2.3439 -5.8667 21 6 6.7393 -1.3727 -4.9808 22 6 6.0359 -0.0078 -4.9621 23 7 4.6261 -0.2447 -4.6199 24 6 3.9047 0.3220 -3.6512 25 8 4.2898 1.2790 -3.0076 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 0.7089 1.1612 3.4844 30 1 1.8663 -2.5522 -2.1648 31 1 0.3555 -1.9520 -1.4399 32 1 1.6466 -2.5988 -0.3991 33 1 0.7417 -0.1074 -2.7608 34 1 1.8499 1.1582 -2.1789 35 1 2.4656 -2.3049 -3.9653 36 1 1.6379 -1.1422 -5.0497 37 1 4.6132 -2.9556 -4.2978 38 1 4.0085 -3.2988 -5.9393 39 1 5.8789 -1.9303 -6.8721 40 1 6.4861 -3.2966 -5.9096 41 1 7.7489 -1.2549 -5.3741 42 1 6.7901 -1.7683 -3.9664 43 1 6.1053 0.4582 -5.9451 44 1 6.4956 0.6370 -4.2132 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872576735.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:46 Heat of formation + Delta-G solvation = 2.151025 kcal Electronic energy + Delta-G solvation = -23484.477438 eV Core-core repulsion = 20244.622166 eV Total energy + Delta-G solvation = -3239.855272 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.06211 -37.55392 -36.79079 -35.28446 -32.89663 -32.19943 -31.19456 -28.54329 -27.30109 -26.54518 -25.19441 -24.21973 -22.83222 -22.35796 -20.81994 -19.46456 -19.07657 -16.61904 -16.61330 -15.95640 -15.74452 -14.98291 -14.84430 -14.62950 -14.25229 -14.11960 -13.80389 -13.51486 -13.30082 -13.05880 -12.85200 -12.58609 -12.41709 -12.10580 -11.52133 -11.42789 -11.15944 -11.10132 -11.00201 -10.87865 -10.81014 -10.75990 -10.67596 -10.49059 -10.04334 -9.88992 -9.65680 -8.94271 -8.69769 -8.34201 -8.19457 -7.19411 -5.96466 -3.99758 2.66687 3.35073 3.41061 3.43948 3.56761 3.94341 4.35134 4.46344 4.54439 4.66353 4.80280 4.93199 5.05771 5.15403 5.18038 5.35244 5.36323 5.43163 5.50556 5.59721 5.62902 5.70621 5.76067 5.86147 5.91156 6.01253 6.16351 6.21088 6.25338 6.38608 6.63891 6.77607 6.84728 6.99063 7.07224 7.18704 7.44964 7.71229 7.87556 7.96475 8.17140 8.40299 8.59749 9.01098 9.05688 9.64687 11.10699 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023745 B = 0.004423 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.933526 B = 6328.645621 C = 6567.375135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.216 3.784 3 H 0.042 0.958 4 C -0.496 4.496 5 H 0.061 0.939 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.548 5.548 13 C 0.038 3.962 14 C 0.315 3.685 15 N -0.620 5.620 16 C 0.095 3.905 17 C 0.120 3.880 18 H 0.087 0.913 19 C -0.128 4.128 20 C -0.116 4.116 21 C -0.138 4.138 22 C 0.154 3.846 23 N -0.637 5.637 24 C 0.708 3.292 25 O -0.579 6.579 26 H 0.090 0.910 27 H 0.005 0.995 28 H 0.032 0.968 29 H 0.260 0.740 30 H 0.038 0.962 31 H 0.018 0.982 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.947 -7.193 -19.379 21.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.110 3.890 3 H 0.060 0.940 4 C -0.535 4.535 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.273 5.273 13 C -0.111 4.111 14 C 0.103 3.897 15 N -0.360 5.360 16 C -0.029 4.029 17 C 0.016 3.984 18 H 0.105 0.895 19 C -0.166 4.166 20 C -0.153 4.153 21 C -0.176 4.176 22 C 0.032 3.968 23 N -0.376 5.376 24 C 0.410 3.590 25 O -0.455 6.455 26 H 0.109 0.891 27 H 0.024 0.976 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.036 0.964 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.599 -6.492 -18.738 20.606 hybrid contribution -0.624 -0.562 0.750 1.126 sum 4.975 -7.053 -17.988 19.952 Atomic orbital electron populations 1.22447 1.00573 0.99441 1.00636 1.19301 0.89663 0.94636 0.85365 0.93996 1.21063 1.30400 1.12438 0.89550 0.92079 1.24914 0.95254 0.95167 0.98953 1.69878 1.37091 1.23066 1.23378 0.86508 0.78545 0.79891 0.82491 1.20704 1.21387 1.20036 1.61960 1.59686 1.02824 1.02823 1.22268 0.95830 0.91861 1.01118 1.21564 0.87022 0.97896 0.83180 1.47576 1.19498 1.36113 1.32764 1.22382 0.97091 0.93239 0.90202 1.22092 0.89994 0.89837 0.96519 0.89487 1.22115 0.95884 0.95949 1.02648 1.21502 0.95355 0.99457 0.99024 1.21991 0.98849 0.95619 1.01155 1.21376 0.77991 0.96664 1.00797 1.47406 1.11529 1.42604 1.36089 1.15664 0.80875 0.82541 0.79887 1.90923 1.73463 1.28512 1.52616 0.89143 0.97570 0.94884 0.93013 0.94307 0.96391 0.90813 0.93443 0.89193 0.90297 0.90641 0.90906 0.90523 0.92011 0.91687 0.90701 0.91222 0.91812 0.89285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 8.26 37.16 0.31 -3.80 16 2 C 0.22 5.59 2.27 -68.86 -0.16 5.43 16 3 H 0.04 1.23 7.80 -51.93 -0.40 0.82 16 4 C -0.50 -13.91 7.91 -34.44 -0.27 -14.19 16 5 H 0.06 1.73 7.12 -52.49 -0.37 1.36 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -25.92 11.32 55.43 0.63 -25.29 16 8 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 9 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 N -0.55 -12.19 4.80 -240.19 -1.15 -13.35 16 13 C 0.04 0.73 8.61 60.07 0.52 1.24 16 14 C 0.31 6.10 5.05 -63.31 -0.32 5.78 16 15 N -0.62 -10.69 3.18 -182.55 -0.58 -11.27 16 16 C 0.10 1.14 7.04 -3.30 -0.02 1.12 16 17 C 0.12 1.26 3.90 -66.78 -0.26 1.00 16 18 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 19 C -0.13 -1.10 5.42 -26.28 -0.14 -1.24 16 20 C -0.12 -0.90 5.76 -26.41 -0.15 -1.05 16 21 C -0.14 -1.27 6.10 -26.49 -0.16 -1.43 16 22 C 0.15 1.77 6.94 -3.48 -0.02 1.75 16 23 N -0.64 -9.05 3.02 -170.20 -0.51 -9.56 16 24 C 0.71 13.49 8.32 -88.67 -0.74 12.76 16 25 O -0.58 -13.81 17.13 5.29 0.09 -13.72 16 26 H 0.09 2.41 6.07 -51.92 -0.32 2.10 16 27 H 0.01 0.12 7.31 -51.93 -0.38 -0.26 16 28 H 0.03 0.75 6.42 -51.93 -0.33 0.42 16 29 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.04 0.64 6.13 -51.93 -0.32 0.32 16 31 H 0.02 0.33 6.38 -51.93 -0.33 0.00 16 32 H 0.07 1.55 6.76 -51.93 -0.35 1.20 16 33 H 0.05 0.82 7.57 -51.93 -0.39 0.43 16 34 H 0.09 1.94 7.38 -51.93 -0.38 1.56 16 35 H 0.08 0.92 5.96 -51.92 -0.31 0.61 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.77 7.99 -51.93 -0.41 0.36 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.09 1.18 7.87 -51.93 -0.41 0.77 16 LS Contribution 335.36 15.07 5.05 5.05 Total: -1.00 -33.42 335.36 -10.25 -43.67 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -7.23 Total: -1.28 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: -1.52 Total: 8.91 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -1.62 Total: -59.47 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.09 Total: -13.72 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.42 -10.25 -43.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872576735.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.817 kcal (2) G-P(sol) polarization free energy of solvation -33.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds