Wall clock time and date at job start Tue Mar 31 2020 05:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.46972 * 2 1 4 4 C 1.50696 * 109.46864 * 239.99645 * 2 1 3 5 5 H 1.07999 * 120.00220 * 239.99491 * 4 2 1 6 6 C 1.37876 * 119.99984 * 60.00401 * 4 2 1 7 7 N 1.31515 * 120.00240 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00203 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46860 * 59.99736 * 8 6 4 10 10 H 1.48494 * 109.47154 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47044 * 299.99944 * 8 6 4 12 12 N 1.46899 * 109.47063 * 120.00121 * 2 1 3 13 13 C 1.46903 * 110.99996 * 58.95073 * 12 2 1 14 14 C 1.46900 * 111.00055 * 295.00158 * 12 2 1 15 15 N 1.46498 * 109.47235 * 205.00195 * 14 12 2 16 16 C 1.47196 * 125.40773 * 89.99767 * 15 14 12 17 17 C 1.53704 * 103.82627 * 182.40387 * 16 15 14 18 18 H 1.09002 * 111.42520 * 113.45985 * 17 16 15 19 19 C 1.53149 * 110.56015 * 237.85462 * 17 16 15 20 20 C 1.53725 * 108.46172 * 164.84402 * 19 17 16 21 21 C 1.52885 * 111.16064 * 298.13772 * 20 19 17 22 22 C 1.53567 * 109.73185 * 61.99066 * 21 20 19 23 23 N 1.46995 * 107.38887 * 308.41482 * 22 21 20 24 24 C 1.33383 * 128.20578 * 233.46206 * 23 22 21 25 25 O 1.21587 * 123.17582 * 349.55066 * 24 23 22 26 26 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47128 * 299.99911 * 1 2 3 28 28 H 1.08998 * 109.47217 * 60.00319 * 1 2 3 29 29 H 0.96994 * 120.00556 * 180.02562 * 7 6 4 30 30 H 1.08993 * 109.47493 * 296.04669 * 13 12 2 31 31 H 1.09002 * 109.46775 * 56.05209 * 13 12 2 32 32 H 1.09010 * 109.46912 * 176.04721 * 13 12 2 33 33 H 1.09001 * 109.47588 * 84.99813 * 14 12 2 34 34 H 1.09004 * 109.47264 * 324.99934 * 14 12 2 35 35 H 1.08998 * 110.55899 * 63.81947 * 16 15 14 36 36 H 1.09003 * 110.55989 * 300.98904 * 16 15 14 37 37 H 1.08999 * 109.59374 * 286.38500 * 19 17 16 38 38 H 1.08997 * 109.59456 * 46.82990 * 19 17 16 39 39 H 1.09001 * 109.20321 * 177.45109 * 20 19 17 40 40 H 1.08993 * 108.50734 * 58.37575 * 20 19 17 41 41 H 1.09004 * 109.43207 * 301.90901 * 21 20 19 42 42 H 1.09001 * 109.43047 * 182.06750 * 21 20 19 43 43 H 1.09002 * 109.87300 * 188.94305 * 22 21 20 44 44 H 1.08995 * 109.92963 * 67.91983 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0080 10 1 1.8279 -0.4194 -5.2204 11 1 3.8074 -1.1192 -4.0077 12 7 2.0197 -0.6925 1.1994 13 6 1.5283 -2.0761 1.2459 14 6 1.6487 0.0391 2.4181 15 7 2.5925 -0.2873 3.4900 16 6 3.8407 0.4379 3.7773 17 6 4.4629 -0.3489 4.9419 18 1 5.3903 -0.8371 4.6421 19 6 4.6793 0.5636 6.1527 20 6 4.9334 -0.3172 7.3867 21 6 3.7272 -1.2072 7.6874 22 6 3.4759 -2.1561 6.5064 23 7 3.4188 -1.3357 5.2881 24 6 2.4566 -1.2951 4.3652 25 8 1.5426 -2.0958 4.3213 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.7082 1.1608 -3.4844 30 1 0.4420 -2.0731 1.3347 31 1 1.8167 -2.5950 0.3318 32 1 1.9617 -2.5869 2.1059 33 1 0.6415 -0.2469 2.7212 34 1 1.6784 1.1109 2.2217 35 1 3.6270 1.4632 4.0792 36 1 4.5005 0.4230 2.9097 37 1 5.5219 1.2286 5.9633 38 1 3.7796 1.1521 6.3322 39 1 5.1340 0.3209 8.2474 40 1 5.8038 -0.9434 7.1915 41 1 2.8470 -0.5839 7.8453 42 1 3.9228 -1.7914 8.5866 43 1 2.5296 -2.6788 6.6460 44 1 4.2895 -2.8773 6.4297 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872576736.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:49 Heat of formation + Delta-G solvation = 0.053759 kcal Electronic energy + Delta-G solvation = -23383.102953 eV Core-core repulsion = 20143.156737 eV Total energy + Delta-G solvation = -3239.946216 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.11617 -37.63783 -36.70400 -35.35869 -32.93385 -32.23813 -31.20731 -28.51098 -27.12115 -26.63773 -25.13272 -24.31716 -22.71168 -22.38683 -20.87416 -19.62878 -18.90818 -16.69965 -16.60552 -16.07551 -15.64256 -14.98330 -14.91456 -14.64983 -14.31916 -14.10271 -13.74727 -13.52055 -13.15586 -13.04405 -12.91816 -12.68099 -12.35388 -12.08424 -11.48534 -11.47773 -11.19561 -11.06699 -11.00514 -10.89418 -10.81511 -10.74388 -10.65549 -10.50199 -9.99019 -9.90883 -9.70381 -8.95341 -8.73446 -8.37932 -8.21761 -7.16691 -6.00095 -4.03614 2.65484 3.34235 3.38013 3.41221 3.45612 3.94657 4.35236 4.43543 4.48737 4.61016 4.76238 4.90417 5.06561 5.13205 5.20329 5.32265 5.37603 5.42593 5.55423 5.62653 5.64111 5.71113 5.76572 5.81183 5.90541 6.01194 6.10064 6.26811 6.46414 6.58528 6.72854 6.83939 6.94357 7.05059 7.07983 7.18606 7.47398 7.74063 7.85307 7.90908 8.11690 8.40381 8.59091 8.92622 9.02275 9.61305 11.06894 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033447 B = 0.003917 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.933332 B = 7146.721293 C = 7293.094554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.216 3.784 3 H 0.039 0.961 4 C -0.499 4.499 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.551 5.551 13 C 0.042 3.958 14 C 0.313 3.687 15 N -0.618 5.618 16 C 0.100 3.900 17 C 0.119 3.881 18 H 0.090 0.910 19 C -0.126 4.126 20 C -0.117 4.117 21 C -0.136 4.136 22 C 0.152 3.848 23 N -0.636 5.636 24 C 0.703 3.297 25 O -0.588 6.588 26 H 0.032 0.968 27 H 0.006 0.994 28 H 0.089 0.911 29 H 0.261 0.739 30 H 0.017 0.983 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.081 0.617 19.102 20.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.110 3.890 3 H 0.057 0.943 4 C -0.538 4.538 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.276 5.276 13 C -0.106 4.106 14 C 0.102 3.898 15 N -0.356 5.356 16 C -0.024 4.024 17 C 0.014 3.986 18 H 0.108 0.892 19 C -0.165 4.165 20 C -0.155 4.155 21 C -0.175 4.175 22 C 0.030 3.970 23 N -0.375 5.375 24 C 0.405 3.595 25 O -0.467 6.467 26 H 0.051 0.949 27 H 0.025 0.975 28 H 0.108 0.892 29 H 0.070 0.930 30 H 0.036 0.964 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.106 0.894 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.906 0.229 18.868 20.459 hybrid contribution -0.444 -0.322 -0.892 1.047 sum 7.462 -0.093 17.976 19.464 Atomic orbital electron populations 1.22447 1.00615 0.99676 1.00509 1.19288 0.89823 0.94320 0.85612 0.94271 1.21065 1.30620 1.12471 0.89595 0.91999 1.24911 0.95216 0.95124 0.98948 1.69868 1.37003 1.23071 1.23517 0.86574 0.79173 0.79660 0.82068 1.20365 1.21400 1.20276 1.62037 1.60412 1.02869 1.02324 1.22204 0.96959 0.90219 1.01219 1.21573 0.88284 0.97309 0.82681 1.47635 1.24359 1.31241 1.32353 1.22301 0.86934 0.95978 0.97194 1.22156 0.92558 0.89518 0.94337 0.89239 1.22109 1.02690 0.97587 0.94105 1.21514 0.98070 0.98254 0.97673 1.21988 0.98959 0.98616 0.97905 1.21383 1.02737 0.91808 0.81040 1.47401 1.22555 1.42764 1.24752 1.15731 0.82163 0.81691 0.79897 1.90893 1.36216 1.43011 1.76531 0.94855 0.97510 0.89236 0.92950 0.96450 0.91320 0.93196 0.92784 0.89787 0.90612 0.89544 0.90187 0.91350 0.91674 0.91869 0.91532 0.90679 0.89430 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.24 8.34 37.16 0.31 -3.93 16 2 C 0.22 5.42 2.28 -68.86 -0.16 5.26 16 3 H 0.04 1.05 7.93 -51.93 -0.41 0.64 16 4 C -0.50 -13.71 7.88 -34.44 -0.27 -13.98 16 5 H 0.06 1.73 6.77 -52.49 -0.36 1.37 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.32 11.32 55.43 0.63 -24.69 16 8 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.55 -12.33 4.84 -240.19 -1.16 -13.50 16 13 C 0.04 0.96 8.50 60.07 0.51 1.47 16 14 C 0.31 6.05 4.83 -63.32 -0.31 5.75 16 15 N -0.62 -10.55 3.18 -182.57 -0.58 -11.13 16 16 C 0.10 1.26 7.31 -3.30 -0.02 1.24 16 17 C 0.12 1.27 3.91 -66.79 -0.26 1.01 16 18 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 19 C -0.13 -1.00 5.40 -26.28 -0.14 -1.14 16 20 C -0.12 -0.82 5.76 -26.41 -0.15 -0.97 16 21 C -0.14 -1.08 6.10 -26.50 -0.16 -1.24 16 22 C 0.15 1.62 6.94 -3.48 -0.02 1.60 16 23 N -0.64 -8.64 3.02 -170.21 -0.51 -9.15 16 24 C 0.70 12.65 7.73 -88.70 -0.69 11.96 16 25 O -0.59 -12.79 15.59 5.29 0.08 -12.71 16 26 H 0.03 0.81 6.48 -51.93 -0.34 0.48 16 27 H 0.01 0.13 7.13 -51.93 -0.37 -0.24 16 28 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.02 0.39 6.43 -51.93 -0.33 0.06 16 31 H 0.07 1.62 6.41 -51.93 -0.33 1.28 16 32 H 0.05 1.13 6.05 -51.92 -0.31 0.82 16 33 H 0.05 1.12 7.33 -51.93 -0.38 0.74 16 34 H 0.08 1.52 7.72 -51.93 -0.40 1.12 16 35 H 0.08 0.81 7.66 -51.93 -0.40 0.41 16 36 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.60 8.01 -51.93 -0.42 0.18 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.09 1.04 7.87 -51.93 -0.41 0.63 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 334.38 15.07 5.04 5.04 Total: -1.00 -31.82 334.38 -10.28 -42.10 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -7.29 Total: -0.97 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: -1.46 Total: 8.56 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: -1.63 Total: -58.46 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.08 Total: -12.71 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.82 -10.28 -42.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872576736.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.153 kcal (2) G-P(sol) polarization free energy of solvation -31.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds