Wall clock time and date at job start Tue Mar 31 2020 05:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46905 * 109.46874 * 2 1 4 4 C 1.48182 * 111.07496 * 70.70755 * 3 2 1 5 5 C 1.53935 * 86.22310 * 137.46244 * 4 3 2 6 6 C 1.47959 * 111.00078 * 170.00098 * 3 2 1 7 7 H 1.08997 * 113.75911 * 336.84159 * 6 3 2 8 8 C 1.52995 * 113.76145 * 108.10078 * 6 3 2 9 9 N 1.46500 * 109.47055 * 303.02144 * 8 6 3 10 10 C 1.34774 * 120.00319 * 180.27628 * 9 8 6 11 11 O 1.21589 * 120.00021 * 359.72489 * 10 9 8 12 12 N 1.34778 * 120.00423 * 179.72266 * 10 9 8 13 13 C 1.46494 * 120.00166 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47088 * 178.28815 * 13 12 10 15 15 C 1.50703 * 115.55016 * 65.14065 * 14 13 12 16 16 H 1.08000 * 119.99742 * 265.40191 * 15 14 13 17 17 C 1.37874 * 120.00116 * 85.40721 * 15 14 13 18 18 N 1.31511 * 120.00258 * 353.55014 * 17 15 14 19 19 Si 1.86805 * 119.99735 * 173.55567 * 17 15 14 20 20 H 1.48501 * 109.47180 * 89.99651 * 19 17 15 21 21 H 1.48504 * 109.46717 * 209.99278 * 19 17 15 22 22 H 1.48496 * 109.47128 * 329.99647 * 19 17 15 23 23 C 1.53003 * 117.49836 * 279.46739 * 14 13 12 24 24 C 1.52996 * 117.49983 * 210.80635 * 14 13 12 25 25 H 1.09005 * 109.46903 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47697 * 299.99809 * 1 2 3 27 27 H 1.08999 * 109.47492 * 59.99957 * 1 2 3 28 28 H 1.08993 * 109.47469 * 240.00602 * 2 1 3 29 29 H 1.09003 * 109.47203 * 119.99650 * 2 1 3 30 30 H 1.09007 * 113.65987 * 23.14020 * 4 3 2 31 31 H 1.08997 * 113.92850 * 251.81847 * 4 3 2 32 32 H 1.09005 * 113.73751 * 222.01056 * 5 4 3 33 33 H 1.09003 * 113.82667 * 90.74466 * 5 4 3 34 34 H 1.08997 * 109.47369 * 183.02075 * 8 6 3 35 35 H 1.09002 * 109.47348 * 63.01988 * 8 6 3 36 36 H 0.97001 * 120.00059 * 359.97438 * 9 8 6 37 37 H 0.96998 * 119.99506 * 0.02562 * 12 10 9 38 38 H 1.09005 * 109.46802 * 298.28195 * 13 12 10 39 39 H 1.08994 * 109.47670 * 58.28475 * 13 12 10 40 40 H 0.97000 * 120.00568 * 185.07485 * 18 17 15 41 41 H 1.08996 * 117.49924 * 0.02562 * 23 14 13 42 42 H 1.09005 * 117.49229 * 145.02044 * 23 14 13 43 43 H 1.09002 * 117.50301 * 214.97410 * 24 14 13 44 44 H 1.09001 * 117.50143 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.7664 2.0397 1.3051 5 6 3.1866 2.6191 1.1747 6 6 3.4788 1.4316 0.2398 7 1 3.8675 0.5529 0.7545 8 6 4.2953 1.8081 -0.9981 9 7 4.0043 0.8647 -2.0804 10 6 4.6173 0.9977 -3.2733 11 8 5.4080 1.9037 -3.4529 12 7 4.3538 0.1265 -4.2673 13 6 5.0204 0.2708 -5.5638 14 6 4.5802 -0.8625 -6.4926 15 6 3.1231 -0.8588 -6.8773 16 1 2.4148 -1.4497 -6.3156 17 6 2.6944 -0.1010 -7.9464 18 7 3.5297 0.7152 -8.5510 19 14 0.9268 -0.2337 -8.5360 20 1 0.0889 0.7585 -7.8158 21 1 0.8702 0.0367 -9.9951 22 1 0.4163 -1.6018 -8.2659 23 6 5.2622 -2.2214 -6.3214 24 6 5.5855 -1.3502 -7.5378 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3635 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6525 1.3382 2.1316 31 1 0.9801 2.7939 1.2762 32 1 3.7566 2.5968 2.1036 33 1 3.2228 3.5883 0.6773 34 1 5.3579 1.7693 -0.7581 35 1 4.0310 2.8170 -1.3147 36 1 3.3738 0.1416 -1.9372 37 1 3.7227 -0.5961 -4.1242 38 1 4.7499 1.2293 -6.0067 39 1 6.1005 0.2271 -5.4239 40 1 3.2109 1.3019 -9.2545 41 1 6.0242 -2.3081 -5.5468 42 1 4.6570 -3.1127 -6.4874 43 1 5.1930 -1.6687 -8.5035 44 1 6.5604 -0.8633 -7.5640 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883621138.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:03 Heat of formation + Delta-G solvation = 22.795387 kcal Electronic energy + Delta-G solvation = -22403.454014 eV Core-core repulsion = 19164.493949 eV Total energy + Delta-G solvation = -3238.960065 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.43988 -39.05693 -36.70978 -34.18044 -33.19422 -32.84799 -31.92582 -28.52915 -27.46111 -26.00429 -24.99446 -23.23759 -22.04194 -21.16505 -20.25196 -19.80880 -19.31889 -17.69720 -16.53213 -16.39166 -15.62036 -15.39092 -14.99201 -14.62864 -14.50097 -14.14708 -13.84672 -13.69753 -13.35738 -13.04985 -12.62469 -12.53340 -12.23401 -12.07721 -11.64797 -11.58102 -11.47485 -11.31188 -10.96815 -10.89815 -10.85719 -10.80293 -10.49623 -10.23442 -9.67127 -9.46166 -9.02079 -8.92233 -8.70631 -8.45338 -8.20610 -7.88193 -6.03544 -4.11931 3.21471 3.28833 3.36312 3.37820 3.67071 3.91334 4.24316 4.38736 4.49528 4.71560 4.85857 4.93007 5.00340 5.03484 5.10470 5.24675 5.30166 5.39555 5.42354 5.48950 5.58580 5.63326 5.80757 5.87591 5.94526 6.04743 6.08370 6.17566 6.38626 6.51920 6.65197 6.73103 6.83556 6.90665 6.91988 7.12718 7.40804 7.47460 7.53065 7.68575 7.85388 8.38493 8.75651 8.88532 9.30994 9.54559 11.04345 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016766 B = 0.004230 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.676852 B = 6617.442394 C = 7487.109053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.015 3.985 3 N -0.469 5.469 4 C 0.001 3.999 5 C -0.135 4.135 6 C 0.016 3.984 7 H 0.083 0.917 8 C 0.163 3.837 9 N -0.748 5.748 10 C 0.698 3.302 11 O -0.606 6.606 12 N -0.721 5.721 13 C 0.183 3.817 14 C 0.029 3.971 15 C -0.499 4.499 16 H 0.059 0.941 17 C 0.074 3.926 18 N -0.874 5.874 19 Si 0.889 3.111 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.211 4.211 24 C -0.147 4.147 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.039 0.961 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.390 0.610 37 H 0.394 0.606 38 H 0.069 0.931 39 H 0.034 0.966 40 H 0.261 0.739 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.926 -0.983 19.470 19.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 N -0.193 5.193 4 C -0.127 4.127 5 C -0.174 4.174 6 C -0.094 4.094 7 H 0.101 0.899 8 C 0.038 3.962 9 N -0.405 5.405 10 C 0.398 3.602 11 O -0.486 6.486 12 N -0.373 5.373 13 C 0.059 3.941 14 C 0.028 3.972 15 C -0.537 4.537 16 H 0.077 0.923 17 C -0.130 4.130 18 N -0.510 5.510 19 Si 0.717 3.283 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.248 4.248 24 C -0.186 4.186 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.114 0.886 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.224 0.776 37 H 0.227 0.773 38 H 0.087 0.913 39 H 0.052 0.948 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.435 0.203 18.444 18.605 hybrid contribution -1.330 -1.192 0.398 1.829 sum -3.764 -0.988 18.841 19.239 Atomic orbital electron populations 1.21713 0.94452 1.01770 1.02554 1.22651 0.96960 0.90767 1.00963 1.68678 1.05742 1.14912 1.29952 1.23860 0.98266 0.98924 0.91679 1.23348 0.96051 0.98711 0.99241 1.23778 0.90485 0.98953 0.96174 0.89925 1.20961 0.97771 0.93396 0.84065 1.44975 1.48948 1.34378 1.12172 1.16044 0.81250 0.82725 0.80219 1.90861 1.39941 1.35488 1.82264 1.45120 1.47912 1.31569 1.12736 1.20829 0.92781 1.00550 0.79952 1.19045 0.93890 0.88566 0.95729 1.20315 0.90798 1.29010 1.13554 0.92309 1.24973 0.97123 0.95086 0.95787 1.69972 1.34191 1.22134 1.24703 0.86646 0.85165 0.78446 0.78078 1.20675 1.21182 1.19870 1.23015 1.04020 0.96729 1.01069 1.22486 0.98816 1.03365 0.93902 0.92205 0.92928 0.91538 0.90573 0.94299 0.91415 0.89285 0.90744 0.88571 0.91661 0.91317 0.77572 0.77254 0.91256 0.94810 0.92868 0.91685 0.90450 0.89845 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.98 37.15 0.37 -0.91 16 2 C 0.02 0.14 5.33 -3.82 -0.02 0.12 16 3 N -0.47 -4.79 5.90 -229.73 -1.35 -6.14 16 4 C 0.00 0.01 7.12 -2.64 -0.02 -0.01 16 5 C -0.14 -1.06 7.84 -25.79 -0.20 -1.26 16 6 C 0.02 0.15 3.43 -66.66 -0.23 -0.08 16 7 H 0.08 0.71 7.79 -51.93 -0.40 0.30 16 8 C 0.16 2.14 5.83 -4.04 -0.02 2.11 16 9 N -0.75 -11.46 5.49 -65.23 -0.36 -11.81 16 10 C 0.70 14.11 8.57 -86.92 -0.74 13.36 16 11 O -0.61 -14.58 16.34 5.29 0.09 -14.50 16 12 N -0.72 -14.77 5.48 -65.23 -0.36 -15.13 16 13 C 0.18 4.32 5.50 -4.05 -0.02 4.29 16 14 C 0.03 0.68 1.38 -155.66 -0.21 0.47 16 15 C -0.50 -13.03 8.63 -34.44 -0.30 -13.32 16 16 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 17 C 0.07 2.01 5.39 -17.82 -0.10 1.91 16 18 N -0.87 -24.67 12.91 55.43 0.72 -23.95 16 19 Si 0.89 20.86 29.55 -169.99 -5.02 15.84 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 23 C -0.21 -4.45 9.96 -26.69 -0.27 -4.72 16 24 C -0.15 -3.42 9.42 -26.69 -0.25 -3.67 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.42 7.55 -51.93 -0.39 0.02 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.08 0.74 6.52 -51.93 -0.34 0.40 16 29 H 0.04 0.31 7.69 -51.93 -0.40 -0.09 16 30 H 0.07 0.46 7.78 -51.93 -0.40 0.05 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.10 0.80 7.92 -51.93 -0.41 0.39 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.01 7.87 -51.93 -0.41 0.60 16 36 H 0.39 5.19 6.51 -40.82 -0.27 4.92 16 37 H 0.39 7.36 8.38 -40.82 -0.34 7.02 16 38 H 0.07 1.89 8.14 -51.93 -0.42 1.47 16 39 H 0.03 0.79 8.09 -51.93 -0.42 0.37 16 40 H 0.26 7.10 8.32 -40.82 -0.34 6.76 16 41 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 43 H 0.08 2.05 8.14 -51.93 -0.42 1.62 16 44 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 359.01 15.07 5.41 5.41 Total: -1.00 -30.99 359.01 -10.45 -41.44 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -7.56 Total: 10.55 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -2.01 Total: -1.70 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: -1.35 Total: -57.04 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: 0.09 Total: -14.50 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.99 -10.45 -41.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883621138.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.235 kcal (2) G-P(sol) polarization free energy of solvation -30.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds