Wall clock time and date at job start Tue Mar 31 2020 05:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46900 * 109.47118 * 2 1 4 4 C 1.47482 * 110.99838 * 285.96901 * 3 2 1 5 5 C 1.53513 * 87.93199 * 221.29349 * 4 3 2 6 6 C 1.47483 * 111.00226 * 189.99820 * 3 2 1 7 7 H 1.09001 * 113.47413 * 23.87355 * 6 3 2 8 8 C 1.52998 * 113.47384 * 253.46861 * 6 3 2 9 9 N 1.46494 * 109.47216 * 54.99836 * 8 6 3 10 10 C 1.34777 * 120.00285 * 179.97438 * 9 8 6 11 11 O 1.21588 * 119.99563 * 0.02562 * 10 9 8 12 12 N 1.34769 * 120.00547 * 180.02562 * 10 9 8 13 13 C 1.46495 * 120.00431 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47384 * 186.14896 * 13 12 10 15 15 C 1.50695 * 115.54920 * 40.07952 * 14 13 12 16 16 H 1.08004 * 119.99693 * 264.81309 * 15 14 13 17 17 C 1.37871 * 120.00309 * 84.81725 * 15 14 13 18 18 N 1.31514 * 120.00230 * 351.91033 * 17 15 14 19 19 Si 1.86803 * 120.00222 * 171.91157 * 17 15 14 20 20 H 1.48508 * 109.47197 * 89.99743 * 19 17 15 21 21 H 1.48496 * 109.47306 * 209.99850 * 19 17 15 22 22 H 1.48502 * 109.47099 * 329.99991 * 19 17 15 23 23 C 1.53003 * 117.49950 * 254.37023 * 14 13 12 24 24 C 1.53001 * 60.00120 * 252.51120 * 23 14 13 25 25 H 1.09001 * 109.46959 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46938 * 300.00428 * 1 2 3 27 27 H 1.09004 * 109.46579 * 60.00520 * 1 2 3 28 28 H 1.08997 * 109.47692 * 240.00085 * 2 1 3 29 29 H 1.08997 * 109.47229 * 119.99572 * 2 1 3 30 30 H 1.08991 * 113.47971 * 336.06416 * 4 3 2 31 31 H 1.09005 * 113.47638 * 106.53016 * 4 3 2 32 32 H 1.09004 * 114.17396 * 272.37505 * 5 4 3 33 33 H 1.08999 * 114.16704 * 139.66851 * 5 4 3 34 34 H 1.09002 * 109.47325 * 294.99726 * 8 6 3 35 35 H 1.09003 * 109.46692 * 174.99932 * 8 6 3 36 36 H 0.96998 * 120.00129 * 359.97438 * 9 8 6 37 37 H 0.96998 * 119.99867 * 0.02562 * 12 10 9 38 38 H 1.09011 * 109.47051 * 66.14963 * 13 12 10 39 39 H 1.09001 * 109.47302 * 306.15013 * 13 12 10 40 40 H 0.96994 * 120.00361 * 185.02840 * 18 17 15 41 41 H 1.09000 * 117.50174 * 359.97438 * 23 14 13 42 42 H 1.09001 * 117.49728 * 145.02074 * 23 14 13 43 43 H 1.09006 * 117.49477 * 252.51169 * 24 23 14 44 44 H 1.08994 * 117.50174 * 107.48769 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8387 2.0095 -1.3237 5 6 3.2290 2.6383 -1.1554 6 6 3.4743 1.4314 -0.2390 7 1 3.8560 0.5562 -0.7648 8 6 4.2870 1.7711 1.0119 9 7 3.9533 0.8279 2.0821 10 6 4.5518 0.9343 3.2850 11 8 5.3683 1.8135 3.4821 12 7 4.2453 0.0663 4.2693 13 6 4.8954 0.1823 5.5770 14 6 4.4905 -1.0035 6.4549 15 6 4.4160 -2.3355 5.7540 16 1 3.4707 -2.6933 5.3735 17 6 5.5546 -3.0973 5.5987 18 7 6.7288 -2.5975 5.9166 19 14 5.4295 -4.8396 4.9365 20 1 5.5431 -4.8158 3.4560 21 1 6.5261 -5.6647 5.5038 22 1 4.1199 -5.4233 5.3231 23 6 3.4877 -0.7397 7.5800 24 6 4.9591 -0.9968 7.9114 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 1.7838 1.2892 -2.1399 31 1 1.0316 2.7416 -1.3518 32 1 3.2253 3.5979 -0.6384 33 1 3.8315 2.6387 -2.0638 34 1 4.0505 2.7851 1.3346 35 1 5.3506 1.7010 0.7843 36 1 3.3017 0.1268 1.9249 37 1 3.5942 -0.6352 4.1120 38 1 4.5854 1.1114 6.0558 39 1 5.9775 0.1846 5.4459 40 1 7.5361 -3.1052 5.7396 41 1 3.1168 0.2788 7.6951 42 1 2.7738 -1.5296 7.8134 43 1 5.2132 -1.9559 8.3628 44 1 5.5559 -0.1476 8.2441 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883621139.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:04 Heat of formation + Delta-G solvation = 4.037443 kcal Electronic energy + Delta-G solvation = -22541.201121 eV Core-core repulsion = 19301.427650 eV Total energy + Delta-G solvation = -3239.773471 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.50040 -40.56130 -38.51350 -35.49635 -34.86024 -33.98710 -33.70520 -29.65607 -28.22254 -27.73967 -26.81378 -24.05819 -22.94198 -22.79229 -21.75411 -21.23637 -20.68822 -19.15602 -18.14859 -17.29498 -17.17307 -16.63780 -16.34204 -16.24320 -15.79064 -15.52102 -15.06828 -14.83056 -14.62208 -14.39502 -14.28019 -13.72528 -13.47059 -13.25083 -13.02728 -12.89626 -12.82830 -12.75165 -12.33910 -12.24432 -12.03054 -12.00475 -11.64025 -11.54932 -11.45903 -11.16145 -10.80658 -10.44807 -10.27204 -9.99204 -9.83014 -9.46579 -8.08204 -6.21389 1.41224 1.45405 1.53491 1.90350 2.30573 2.42755 2.97206 3.19393 3.39935 3.51154 3.64762 3.81153 4.04298 4.09699 4.25265 4.29027 4.34253 4.42623 4.55049 4.59772 4.65454 4.69937 4.76316 4.80831 4.86273 4.91611 5.00802 5.02040 5.07544 5.10191 5.21937 5.28015 5.28175 5.42724 5.51940 5.62806 5.64463 5.77182 5.81888 6.13776 6.20090 6.39375 6.85720 7.28276 7.48022 7.74318 8.99385 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016878 B = 0.004337 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.609108 B = 6455.031723 C = 6984.198298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.010 3.990 3 N -0.484 5.484 4 C 0.003 3.997 5 C -0.126 4.126 6 C 0.016 3.984 7 H 0.094 0.906 8 C 0.158 3.842 9 N -0.731 5.731 10 C 0.693 3.307 11 O -0.650 6.650 12 N -0.710 5.710 13 C 0.198 3.802 14 C 0.004 3.996 15 C -0.502 4.502 16 H 0.065 0.935 17 C 0.030 3.970 18 N -0.905 5.905 19 Si 0.948 3.052 20 H -0.278 1.278 21 H -0.292 1.292 22 H -0.263 1.263 23 C -0.180 4.180 24 C -0.161 4.161 25 H 0.068 0.932 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.402 0.598 37 H 0.405 0.595 38 H 0.035 0.965 39 H 0.025 0.975 40 H 0.258 0.742 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.064 0.936 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.444 5.365 -15.759 20.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 N -0.207 5.207 4 C -0.125 4.125 5 C -0.164 4.164 6 C -0.094 4.094 7 H 0.112 0.888 8 C 0.034 3.966 9 N -0.387 5.387 10 C 0.392 3.608 11 O -0.533 6.533 12 N -0.364 5.364 13 C 0.072 3.928 14 C 0.004 3.996 15 C -0.540 4.540 16 H 0.083 0.917 17 C -0.172 4.172 18 N -0.542 5.542 19 Si 0.774 3.226 20 H -0.204 1.204 21 H -0.218 1.218 22 H -0.187 1.187 23 C -0.217 4.217 24 C -0.200 4.200 25 H 0.086 0.914 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.238 0.762 37 H 0.241 0.759 38 H 0.054 0.946 39 H 0.043 0.957 40 H 0.067 0.933 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.082 0.918 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.846 6.340 -14.884 19.477 hybrid contribution 0.349 -2.091 -0.675 2.224 sum -10.497 4.249 -15.559 19.244 Atomic orbital electron populations 1.21656 0.93745 1.02258 1.02217 1.22736 0.97562 0.90395 1.01200 1.69010 1.06115 1.16063 1.29513 1.23748 0.98620 0.99172 0.90996 1.23173 0.96774 0.96951 0.99517 1.23731 0.90281 1.00709 0.94717 0.88836 1.21185 0.98197 0.92230 0.85009 1.44916 1.46753 1.36403 1.10664 1.16252 0.81130 0.82075 0.81307 1.90810 1.40066 1.39413 1.83020 1.44890 1.46318 1.33203 1.11944 1.20381 0.94783 0.95672 0.81933 1.19122 0.99493 0.93739 0.87293 1.20538 0.94436 1.01022 1.37996 0.91674 1.25678 0.95172 1.01048 0.95274 1.70120 0.97900 1.38922 1.47283 0.85711 0.77836 0.80763 0.78241 1.20404 1.21835 1.18724 1.23083 0.91943 1.00835 1.05820 1.22431 0.96328 0.99963 1.01229 0.91352 0.92985 0.92008 0.92875 0.91714 0.89901 0.89191 0.88884 0.88275 0.92552 0.92526 0.76214 0.75904 0.94643 0.95678 0.93339 0.89359 0.89573 0.91754 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 10.02 71.98 0.72 -1.44 16 2 C 0.01 0.16 5.30 86.30 0.46 0.62 16 3 N -0.48 -9.03 5.98 -902.11 -5.40 -14.43 16 4 C 0.00 0.04 7.00 83.58 0.58 0.62 16 5 C -0.13 -1.72 8.00 30.94 0.25 -1.47 16 6 C 0.02 0.29 3.26 42.19 0.14 0.43 16 7 H 0.09 1.57 7.77 -2.39 -0.02 1.55 16 8 C 0.16 4.30 5.81 86.38 0.50 4.80 16 9 N -0.73 -23.51 5.47 -478.55 -2.62 -26.12 16 10 C 0.69 29.44 8.57 179.06 1.53 30.97 16 11 O -0.65 -32.80 16.33 -3.99 -0.07 -32.86 16 12 N -0.71 -30.44 5.28 -478.54 -2.53 -32.97 16 13 C 0.20 9.48 5.76 86.38 0.50 9.98 16 14 C 0.00 0.20 1.69 -52.93 -0.09 0.11 16 15 C -0.50 -25.34 7.52 25.60 0.19 -25.15 16 16 H 0.07 3.14 7.83 -2.91 -0.02 3.12 16 17 C 0.03 1.55 5.38 84.65 0.46 2.01 16 18 N -0.91 -51.43 12.99 21.44 0.28 -51.15 16 19 Si 0.95 41.62 29.55 68.60 2.03 43.65 16 20 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 22 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 23 C -0.18 -7.33 9.88 30.60 0.30 -7.03 16 24 C -0.16 -7.46 9.53 30.60 0.29 -7.17 16 25 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 0.82 7.67 -2.39 -0.02 0.80 16 28 H 0.05 0.78 7.56 -2.39 -0.02 0.76 16 29 H 0.06 1.25 6.33 -2.39 -0.02 1.23 16 30 H 0.08 0.86 7.70 -2.39 -0.02 0.85 16 31 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.09 1.39 7.94 -2.38 -0.02 1.37 16 33 H 0.10 0.96 8.14 -2.39 -0.02 0.95 16 34 H 0.06 1.66 7.88 -2.39 -0.02 1.64 16 35 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.40 11.20 6.23 -92.71 -0.58 10.62 16 37 H 0.40 15.98 7.61 -92.71 -0.71 15.27 16 38 H 0.04 1.64 7.95 -2.38 -0.02 1.62 16 39 H 0.02 1.40 8.12 -2.39 -0.02 1.38 16 40 H 0.26 14.19 8.32 -92.71 -0.77 13.42 16 41 H 0.09 3.22 8.09 -2.39 -0.02 3.20 16 42 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 43 H 0.06 3.17 8.14 -2.38 -0.02 3.15 16 44 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -65.81 356.73 -2.76 -68.57 By element: Atomic # 1 Polarization: 38.32 SS G_CDS: -0.30 Total: 38.03 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 5.83 Total: 7.29 kcal Atomic # 7 Polarization: -114.41 SS G_CDS: -10.26 Total: -124.67 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -0.07 Total: -32.86 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -65.81 -2.76 -68.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883621139.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.607 kcal (2) G-P(sol) polarization free energy of solvation -65.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds