Wall clock time and date at job start Tue Mar 31 2020 05:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86793 * 120.00166 * 2 1 4 4 H 1.48507 * 109.47182 * 269.99548 * 3 2 1 5 5 H 1.48497 * 109.47257 * 29.99482 * 3 2 1 6 6 H 1.48498 * 109.47272 * 149.99999 * 3 2 1 7 7 C 1.37887 * 119.99816 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99768 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99931 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46894 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46769 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.46821 * 179.97438 * 11 10 9 13 13 C 1.34781 * 119.99755 * 179.97438 * 12 11 10 14 14 O 1.21589 * 120.00277 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99849 * 180.02562 * 13 12 11 16 16 C 1.46498 * 119.99963 * 180.02562 * 15 13 12 17 17 C 1.52486 * 112.32620 * 61.02030 * 16 15 13 18 18 C 1.56049 * 102.40892 * 75.41673 * 17 16 15 19 19 C 1.55883 * 105.94860 * 25.42598 * 18 17 16 20 20 C 1.49315 * 104.11206 * 5.36224 * 19 18 17 21 21 H 1.08997 * 105.65263 * 75.09127 * 20 19 18 22 22 N 1.42641 * 131.85062 * 203.23337 * 20 19 18 23 23 C 1.49728 * 106.12919 * 157.16242 * 22 20 19 24 24 C 1.52723 * 112.34930 * 282.59033 * 16 15 13 25 25 H 0.97000 * 120.00338 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46784 * 60.00123 * 9 7 2 27 27 H 1.08993 * 109.47259 * 300.00547 * 9 7 2 28 28 H 1.09000 * 109.46902 * 60.00789 * 10 9 7 29 29 H 1.08999 * 109.47264 * 300.00364 * 10 9 7 30 30 H 1.08994 * 109.47319 * 60.00561 * 11 10 9 31 31 H 1.08999 * 109.47401 * 300.00129 * 11 10 9 32 32 H 0.96997 * 120.00414 * 0.02562 * 12 11 10 33 33 H 0.96998 * 119.99943 * 0.02562 * 15 13 12 34 34 H 1.08997 * 110.81841 * 317.18169 * 17 16 15 35 35 H 1.09005 * 110.98516 * 193.72393 * 17 16 15 36 36 H 1.09002 * 110.16972 * 144.56760 * 18 17 16 37 37 H 1.09002 * 110.16754 * 266.28762 * 18 17 16 38 38 H 1.08998 * 110.48696 * 124.03098 * 19 18 17 39 39 H 1.09008 * 110.48804 * 246.67389 * 19 18 17 40 40 H 1.00898 * 111.30748 * 278.04059 * 22 20 19 41 41 H 1.09001 * 110.04569 * 234.14300 * 23 22 20 42 42 H 1.08994 * 110.04933 * 112.66820 * 23 22 20 43 43 H 1.09000 * 111.05959 * 40.31111 * 24 16 15 44 44 H 1.08997 * 111.06149 * 164.26276 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0015 11 6 1.4801 -4.9871 0.0020 12 7 2.4321 -6.1006 0.0011 13 6 1.9827 -7.3713 0.0019 14 8 0.7873 -7.5935 0.0029 15 7 2.8585 -8.3958 0.0017 16 6 2.3701 -9.7770 0.0020 17 6 1.5322 -10.0954 -1.2316 18 6 2.6158 -10.2374 -2.3455 19 6 3.9314 -10.6427 -1.6141 20 6 3.5130 -10.8386 -0.1942 21 1 2.9825 -11.7905 -0.1727 22 7 4.2450 -10.7894 1.0291 23 6 3.2416 -10.5037 2.1030 24 6 1.8868 -10.2217 1.3808 25 1 -0.4850 0.8400 -0.0004 26 1 0.6239 -2.5575 -0.8881 27 1 0.6246 -2.5563 0.8918 28 1 2.8724 -3.6040 0.8910 29 1 2.8712 -3.6048 -0.8890 30 1 0.8531 -5.0450 -0.8877 31 1 0.8538 -5.0447 0.8922 32 1 3.3857 -5.9235 0.0007 33 1 3.8122 -8.2186 0.0013 34 1 0.8491 -9.2767 -1.4577 35 1 0.9854 -11.0294 -1.1016 36 1 2.3262 -11.0126 -3.0550 37 1 2.7505 -9.2871 -2.8621 38 1 4.3273 -11.5704 -2.0272 39 1 4.6705 -9.8449 -1.6883 40 1 4.7247 -11.6595 1.2046 41 1 3.5478 -9.6295 2.6775 42 1 3.1419 -11.3673 2.7605 43 1 1.3360 -9.4239 1.8789 44 1 1.2835 -11.1268 1.3112 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891512356.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:43 Heat of formation + Delta-G solvation = -28.435805 kcal Electronic energy + Delta-G solvation = -22387.677231 eV Core-core repulsion = 19146.495615 eV Total energy + Delta-G solvation = -3241.181617 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.25899 -38.99687 -35.40427 -34.99581 -33.54415 -33.13684 -31.26499 -30.25781 -27.31663 -27.09387 -26.34681 -23.20704 -21.77063 -21.27812 -20.57570 -20.21624 -19.40268 -17.87419 -16.76184 -16.54896 -16.18377 -15.71884 -15.22764 -14.85274 -14.67414 -14.39678 -13.88133 -13.79265 -13.53098 -13.24539 -12.71261 -12.57682 -12.25917 -12.09815 -11.77304 -11.71259 -11.56247 -11.45033 -11.07251 -10.88062 -10.83285 -10.67971 -10.56503 -10.50110 -9.87252 -9.81842 -9.38987 -9.09742 -9.07772 -8.72276 -8.52344 -8.34973 -5.99666 -4.02565 2.83729 3.32313 3.38588 3.40117 3.41734 3.47378 3.94225 4.42698 4.43042 4.49118 4.58879 4.74450 4.85022 4.96108 5.11232 5.13604 5.33439 5.36094 5.41839 5.46497 5.50833 5.70705 5.72501 5.76911 5.85681 5.86518 5.98384 6.00041 6.12825 6.23464 6.47584 6.59685 6.67008 6.69482 6.88711 7.01998 7.07171 7.19406 7.66633 7.79820 7.99591 8.27723 8.40769 8.87000 9.04264 9.61425 11.11674 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033770 B = 0.002810 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.937811 B = 9963.204893 C =10033.315010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.137 3.863 12 N -0.743 5.743 13 C 0.702 3.298 14 O -0.593 6.593 15 N -0.723 5.723 16 C 0.185 3.815 17 C -0.126 4.126 18 C -0.117 4.117 19 C -0.098 4.098 20 C 0.059 3.941 21 H 0.026 0.974 22 N -0.667 5.667 23 C 0.052 3.948 24 C -0.141 4.141 25 H 0.261 0.739 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.393 0.607 33 H 0.399 0.601 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.341 0.659 41 H 0.081 0.919 42 H 0.054 0.946 43 H 0.085 0.915 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.696 -25.419 -0.354 26.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.158 4.158 11 C 0.013 3.987 12 N -0.397 5.397 13 C 0.402 3.598 14 O -0.471 6.471 15 N -0.379 5.379 16 C 0.096 3.904 17 C -0.165 4.165 18 C -0.155 4.155 19 C -0.136 4.136 20 C -0.053 4.053 21 H 0.044 0.956 22 N -0.297 5.297 23 C -0.076 4.076 24 C -0.180 4.180 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.226 0.774 33 H 0.233 0.767 34 H 0.110 0.890 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.158 0.842 41 H 0.099 0.901 42 H 0.073 0.927 43 H 0.104 0.896 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.657 -24.827 -0.415 25.985 hybrid contribution 0.881 0.214 0.142 0.918 sum 8.539 -24.614 -0.273 26.054 Atomic orbital electron populations 1.69964 1.06058 1.26657 1.50627 1.25031 0.94853 0.99288 0.95317 0.86584 0.79808 0.83455 0.78077 1.20677 1.21226 1.19891 1.21215 0.92994 0.90970 1.50835 0.92660 1.19023 0.93856 0.90824 0.97646 1.21886 0.99764 0.93390 1.00794 1.21471 0.91275 0.84180 1.01725 1.45393 1.10384 1.04475 1.79438 1.16004 0.85312 0.80631 0.77840 1.90888 1.14110 1.84069 1.58054 1.44660 1.08907 1.03628 1.80734 1.21155 0.94343 0.80889 0.93997 1.22398 0.97674 1.02742 0.93665 1.22817 0.93345 1.01683 0.97635 1.21257 0.98378 1.01922 0.92029 1.21576 0.93933 0.97763 0.92029 0.95607 1.60401 1.28154 1.40127 1.01027 1.23408 0.89689 1.01207 0.93247 1.22787 0.96919 1.02114 0.96200 0.92945 0.96286 0.96272 0.92804 0.92813 0.92085 0.92093 0.77395 0.76677 0.88959 0.90841 0.91518 0.91185 0.91374 0.90974 0.84203 0.90068 0.92728 0.89594 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 11 C 0.14 2.48 5.67 -4.04 -0.02 2.45 16 12 N -0.74 -11.03 5.56 -65.22 -0.36 -11.40 16 13 C 0.70 10.77 8.12 -86.91 -0.71 10.06 16 14 O -0.59 -11.30 14.51 5.29 0.08 -11.22 16 15 N -0.72 -8.37 4.77 -50.66 -0.24 -8.61 16 16 C 0.18 1.94 0.32 -129.93 -0.04 1.90 16 17 C -0.13 -1.35 5.87 -25.36 -0.15 -1.50 16 18 C -0.12 -1.01 6.83 -23.56 -0.16 -1.17 16 19 C -0.10 -0.75 6.55 -27.01 -0.18 -0.92 16 20 C 0.06 0.49 3.05 -69.48 -0.21 0.28 16 21 H 0.03 0.21 7.58 -51.93 -0.39 -0.18 16 22 N -0.67 -5.24 7.39 -105.10 -0.78 -6.02 16 23 C 0.05 0.43 7.59 -0.58 0.00 0.43 16 24 C -0.14 -1.43 6.18 -25.22 -0.16 -1.58 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.39 4.80 8.49 -40.82 -0.35 4.45 16 33 H 0.40 4.01 8.68 -40.82 -0.35 3.66 16 34 H 0.09 1.29 6.37 -51.93 -0.33 0.96 16 35 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 40 H 0.34 2.09 8.90 -39.29 -0.35 1.74 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.09 1.08 7.86 -51.93 -0.41 0.67 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 349.24 15.07 5.26 5.26 Total: -1.00 -32.14 349.24 -10.29 -42.43 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -7.64 Total: 4.83 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -2.32 Total: -5.60 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: -0.64 Total: -52.31 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.08 Total: -11.22 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.14 -10.29 -42.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891512356.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.994 kcal (2) G-P(sol) polarization free energy of solvation -32.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds