Wall clock time and date at job start Tue Mar 31 2020 05:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99816 * 2 1 4 4 H 1.48508 * 109.46988 * 269.99928 * 3 2 1 5 5 H 1.48493 * 109.47170 * 29.99970 * 3 2 1 6 6 H 1.48497 * 109.46897 * 149.99959 * 3 2 1 7 7 C 1.37876 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00209 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99922 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47471 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47535 * 179.97438 * 10 9 7 12 12 N 1.46494 * 109.47001 * 180.02562 * 11 10 9 13 13 C 1.34784 * 119.99635 * 180.02562 * 12 11 10 14 14 O 1.21579 * 120.00114 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99908 * 179.97438 * 13 12 11 16 16 C 1.46496 * 120.00258 * 179.97438 * 15 13 12 17 17 C 1.54211 * 111.81351 * 60.69935 * 16 15 13 18 18 C 1.53976 * 104.73885 * 100.25330 * 17 16 15 19 19 C 1.54861 * 103.15638 * 36.87715 * 18 17 16 20 20 C 1.54176 * 104.26737 * 322.50650 * 19 18 17 21 21 H 1.09004 * 111.21799 * 262.52574 * 20 19 18 22 22 N 1.47815 * 109.58658 * 139.14603 * 20 19 18 23 23 C 1.48510 * 105.85707 * 270.74372 * 22 20 19 24 24 C 1.54375 * 103.48466 * 320.93556 * 23 22 20 25 25 H 0.96998 * 120.00165 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.46912 * 60.00012 * 9 7 2 27 27 H 1.09004 * 109.47536 * 300.00220 * 9 7 2 28 28 H 1.09005 * 109.46889 * 60.00186 * 10 9 7 29 29 H 1.08996 * 109.47223 * 300.00965 * 10 9 7 30 30 H 1.09005 * 109.46767 * 60.00250 * 11 10 9 31 31 H 1.09002 * 109.47113 * 300.00590 * 11 10 9 32 32 H 0.96995 * 120.00292 * 0.27801 * 12 11 10 33 33 H 0.96999 * 120.00047 * 0.02562 * 15 13 12 34 34 H 1.08999 * 110.45914 * 217.68113 * 17 16 15 35 35 H 1.08999 * 110.46026 * 340.26041 * 17 16 15 36 36 H 1.09000 * 109.96267 * 278.70482 * 18 17 16 37 37 H 1.09001 * 111.15779 * 155.60765 * 18 17 16 38 38 H 1.08996 * 110.47371 * 203.81357 * 19 18 17 39 39 H 1.09005 * 110.58452 * 81.25200 * 19 18 17 40 40 H 1.00893 * 111.00208 * 150.20102 * 22 20 19 41 41 H 1.09004 * 110.66919 * 78.93045 * 23 22 20 42 42 H 1.09002 * 110.66503 * 201.89164 * 23 22 20 43 43 H 1.09005 * 109.91661 * 278.58550 * 24 23 22 44 44 H 1.08989 * 111.25995 * 155.52586 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0216 -2.6365 0.0014 11 6 5.5516 -2.6365 0.0001 12 7 6.0398 -4.0177 0.0009 13 6 7.3650 -4.2639 0.0005 14 8 8.1551 -3.3398 0.0001 15 7 7.8143 -5.5346 0.0017 16 6 9.2546 -5.8024 0.0008 17 6 9.9471 -5.2167 1.2479 18 6 10.1232 -6.4158 2.1977 19 6 10.4482 -7.5838 1.2342 20 6 9.5598 -7.3186 0.0023 21 1 8.6427 -7.9064 0.0434 22 7 10.3237 -7.6046 -1.2304 23 6 11.0001 -6.3331 -1.5928 24 6 9.9400 -5.2575 -1.2728 25 1 -0.4850 0.8400 -0.0004 26 1 3.8751 -0.6796 0.8895 27 1 3.8746 -0.6808 -0.8905 28 1 3.6579 -3.1513 -0.8880 29 1 3.6585 -3.1494 0.8919 30 1 5.9156 -2.1216 0.8892 31 1 5.9142 -2.1237 -0.8908 32 1 5.4096 -4.7549 -0.0021 33 1 7.1840 -6.2719 0.0025 34 1 10.9280 -4.8191 0.9876 35 1 9.3279 -4.4411 1.6987 36 1 9.1935 -6.6050 2.7344 37 1 10.9453 -6.2490 2.8937 38 1 10.1899 -8.5387 1.6919 39 1 11.5017 -7.5683 0.9548 40 1 9.7123 -7.9129 -1.9713 41 1 11.8875 -6.1806 -0.9784 42 1 11.2604 -6.3240 -2.6512 43 1 9.2260 -5.1842 -2.0932 44 1 10.4042 -4.2910 -1.0771 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891512357.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:45 Heat of formation + Delta-G solvation = -42.552551 kcal Electronic energy + Delta-G solvation = -22292.665079 eV Core-core repulsion = 19050.871314 eV Total energy + Delta-G solvation = -3241.793765 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.03454 -39.11156 -35.57062 -34.58639 -33.82476 -33.22132 -31.46533 -30.40973 -27.69139 -26.75949 -26.37483 -23.00350 -21.99949 -21.51604 -20.66305 -20.10101 -19.47190 -17.93130 -17.53555 -16.78227 -15.97776 -15.55685 -15.05278 -14.85309 -14.75067 -14.27331 -14.20716 -14.10887 -13.76238 -13.25084 -12.71340 -12.41475 -12.24470 -12.07127 -11.94061 -11.84938 -11.64747 -11.36004 -11.08986 -11.07480 -11.00404 -10.88333 -10.80217 -10.22148 -9.99195 -9.81836 -9.67843 -9.23856 -9.22403 -9.04560 -8.69675 -8.56385 -6.07300 -4.06054 2.69521 3.29301 3.30743 3.38323 3.42843 3.68109 4.20144 4.25422 4.34158 4.43720 4.57999 4.86049 4.88250 4.99728 5.04101 5.10791 5.26892 5.28644 5.40534 5.46475 5.53268 5.65864 5.68001 5.69666 5.72651 5.82849 5.92235 6.02731 6.05088 6.06874 6.34818 6.36896 6.45700 6.51946 6.68935 6.81645 6.93966 6.98249 7.22414 7.35745 7.74866 8.08923 8.49179 8.70129 8.96437 9.55012 11.05968 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.037891 B = 0.002806 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.776527 B = 9976.507330 C =10019.396938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.134 3.866 12 N -0.743 5.743 13 C 0.701 3.299 14 O -0.587 6.587 15 N -0.738 5.738 16 C 0.167 3.833 17 C -0.119 4.119 18 C -0.128 4.128 19 C -0.106 4.106 20 C 0.068 3.932 21 H 0.084 0.916 22 N -0.665 5.665 23 C 0.042 3.958 24 C -0.154 4.154 25 H 0.263 0.737 26 H 0.019 0.981 27 H 0.014 0.986 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.394 0.606 33 H 0.393 0.607 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.338 0.662 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.930 -17.191 0.040 27.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C 0.011 3.989 12 N -0.397 5.397 13 C 0.401 3.599 14 O -0.465 6.465 15 N -0.394 5.394 16 C 0.079 3.921 17 C -0.158 4.158 18 C -0.166 4.166 19 C -0.144 4.144 20 C -0.043 4.043 21 H 0.102 0.898 22 N -0.291 5.291 23 C -0.087 4.087 24 C -0.194 4.194 25 H 0.073 0.927 26 H 0.037 0.963 27 H 0.033 0.967 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.227 0.773 33 H 0.227 0.773 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.154 0.846 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 23.079 -16.534 0.341 28.392 hybrid contribution -1.204 0.858 -0.418 1.536 sum 21.875 -15.676 -0.077 26.912 Atomic orbital electron populations 1.69911 1.06325 1.26972 1.51026 1.25029 0.94748 0.99249 0.94454 0.86773 0.80420 0.83501 0.78600 1.20240 1.21365 1.18864 1.21097 0.89323 0.94500 1.51090 0.91033 1.19497 0.97233 0.91463 0.96669 1.21703 0.90729 1.00993 1.01645 1.21494 0.95647 0.80075 1.01731 1.45360 1.04840 1.10038 1.79477 1.15989 0.82940 0.83097 0.77850 1.90904 1.54898 1.43113 1.57561 1.45150 1.06703 1.06346 1.81185 1.21801 0.79548 0.94993 0.95805 1.22485 1.00657 0.97903 0.94730 1.22406 1.01547 0.95003 0.97661 1.22287 1.00277 0.98239 0.93611 1.23039 0.96363 0.92728 0.92183 0.89785 1.62741 1.30739 1.29515 1.06129 1.23020 0.97457 0.87161 1.01096 1.23322 0.98610 1.00444 0.96996 0.92688 0.96293 0.96746 0.92226 0.92150 0.92011 0.92085 0.77277 0.77329 0.91072 0.90142 0.91673 0.91190 0.91326 0.90461 0.84631 0.90088 0.90413 0.91519 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 7 C -0.52 -14.72 9.66 -34.44 -0.33 -15.05 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C -0.01 -0.25 4.04 -27.89 -0.11 -0.36 16 10 C -0.11 -2.10 5.27 -26.73 -0.14 -2.24 16 11 C 0.13 2.23 5.67 -4.04 -0.02 2.21 16 12 N -0.74 -10.15 5.56 -65.23 -0.36 -10.52 16 13 C 0.70 10.00 7.86 -86.91 -0.68 9.32 16 14 O -0.59 -10.55 14.31 5.30 0.08 -10.47 16 15 N -0.74 -7.59 5.23 -50.25 -0.26 -7.86 16 16 C 0.17 1.61 0.87 -129.50 -0.11 1.50 16 17 C -0.12 -1.24 5.50 -25.59 -0.14 -1.38 16 18 C -0.13 -1.04 6.86 -25.24 -0.17 -1.21 16 19 C -0.11 -0.77 6.45 -25.14 -0.16 -0.94 16 20 C 0.07 0.52 3.92 -65.72 -0.26 0.26 16 21 H 0.08 0.55 7.68 -51.93 -0.40 0.15 16 22 N -0.66 -4.91 7.06 -102.52 -0.72 -5.63 16 23 C 0.04 0.32 7.40 -2.21 -0.02 0.31 16 24 C -0.15 -1.55 5.10 -25.19 -0.13 -1.67 16 25 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 27 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.39 4.31 8.49 -40.82 -0.35 3.97 16 33 H 0.39 3.01 8.30 -40.82 -0.34 2.67 16 34 H 0.07 0.73 7.59 -51.93 -0.39 0.34 16 35 H 0.08 1.07 6.67 -51.93 -0.35 0.73 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.60 7.98 -51.93 -0.41 0.18 16 40 H 0.34 2.16 8.92 -39.30 -0.35 1.81 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.74 8.11 -51.93 -0.42 0.32 16 44 H 0.09 1.02 7.63 -51.94 -0.40 0.63 16 LS Contribution 344.12 15.07 5.19 5.19 Total: -1.00 -32.66 344.12 -9.93 -42.59 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -7.56 Total: 4.03 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -2.38 Total: -7.42 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: -0.58 Total: -51.02 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.08 Total: -10.47 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.66 -9.93 -42.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891512357.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.040 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds