Wall clock time and date at job start Tue Mar 31 2020 05:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00282 * 2 1 4 4 H 1.48501 * 109.47330 * 239.99849 * 3 2 1 5 5 H 1.48504 * 109.46802 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46954 * 119.99741 * 3 2 1 7 7 C 1.37876 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00505 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00190 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47362 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46837 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.46968 * 180.02562 * 11 10 9 13 13 C 1.34775 * 119.99876 * 180.02562 * 12 11 10 14 14 O 1.21583 * 120.00144 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99585 * 179.97438 * 13 12 11 16 16 C 1.46499 * 119.99665 * 179.72218 * 15 13 12 17 17 C 1.54209 * 111.82051 * 299.13780 * 16 15 13 18 18 C 1.56444 * 103.56811 * 259.57804 * 17 16 15 19 19 C 1.54861 * 103.23344 * 322.83714 * 18 17 16 20 20 C 1.54171 * 104.26645 * 37.77962 * 19 18 17 21 21 H 1.09004 * 111.67779 * 97.73764 * 20 19 18 22 22 N 1.47815 * 109.09595 * 221.08171 * 20 19 18 23 23 C 1.48513 * 105.85527 * 89.00856 * 22 20 19 24 24 C 1.54550 * 111.84733 * 61.29252 * 16 15 13 25 25 H 0.96996 * 119.99510 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.46998 * 59.99111 * 9 7 2 27 27 H 1.09008 * 109.46631 * 300.00082 * 9 7 2 28 28 H 1.08998 * 109.46965 * 60.00083 * 10 9 7 29 29 H 1.08994 * 109.47339 * 299.99544 * 10 9 7 30 30 H 1.08998 * 109.46943 * 60.00477 * 11 10 9 31 31 H 1.08994 * 109.47547 * 299.99770 * 11 10 9 32 32 H 0.97000 * 119.99601 * 359.97438 * 12 11 10 33 33 H 0.97001 * 120.00485 * 0.02562 * 15 13 12 34 34 H 1.09004 * 110.46165 * 19.72987 * 17 16 15 35 35 H 1.08990 * 110.46510 * 142.30863 * 17 16 15 36 36 H 1.08992 * 110.87997 * 204.19465 * 18 17 16 37 37 H 1.09005 * 110.32252 * 81.21361 * 18 17 16 38 38 H 1.09001 * 110.47519 * 279.08900 * 19 18 17 39 39 H 1.08999 * 110.58612 * 156.52840 * 19 18 17 40 40 H 1.00899 * 111.00111 * 209.54168 * 22 20 19 41 41 H 1.09004 * 110.66648 * 281.07482 * 23 22 20 42 42 H 1.08993 * 110.81696 * 158.00758 * 23 22 20 43 43 H 1.09001 * 110.70164 * 261.70734 * 24 16 15 44 44 H 1.09001 * 110.69964 * 24.93091 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 7 2.4322 -6.1007 0.0018 13 6 1.9828 -7.3713 0.0019 14 8 0.7875 -7.5934 0.0020 15 7 2.8587 -8.3957 0.0020 16 6 2.3703 -9.7769 0.0082 17 6 1.5267 -10.0809 1.2628 18 6 2.5218 -10.8441 2.1981 19 6 3.3464 -11.7060 1.2105 20 6 3.5303 -10.7994 -0.0228 21 1 4.4987 -10.2990 -0.0138 22 7 3.3577 -11.6085 -1.2478 23 6 1.9077 -11.5599 -1.5651 24 6 1.5243 -10.0935 -1.2458 25 1 -0.4849 0.8401 -0.0004 26 1 0.6247 -2.5570 -0.8896 27 1 0.6240 -2.5567 0.8904 28 1 2.8719 -3.6043 0.8905 29 1 2.8718 -3.6044 -0.8894 30 1 0.8533 -5.0450 -0.8886 31 1 0.8538 -5.0446 0.8913 32 1 3.3858 -5.9234 0.0014 33 1 3.8124 -8.2185 0.0023 34 1 1.1683 -9.1557 1.7144 35 1 0.6898 -10.7320 1.0107 36 1 1.9837 -11.4752 2.9053 37 1 3.1644 -10.1378 2.7240 38 1 2.7972 -12.6084 0.9417 39 1 4.3136 -11.9636 1.6420 40 1 3.9068 -11.2357 -2.0077 41 1 1.3516 -12.2499 -0.9304 42 1 1.7339 -11.7825 -2.6178 43 1 0.4603 -10.0131 -1.0231 44 1 1.7972 -9.4355 -2.0708 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891512358.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:47 Heat of formation + Delta-G solvation = -44.971344 kcal Electronic energy + Delta-G solvation = -22233.957737 eV Core-core repulsion = 18992.059086 eV Total energy + Delta-G solvation = -3241.898651 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.95360 -39.03054 -35.44476 -34.44106 -33.72513 -33.22289 -31.26405 -30.29118 -27.44199 -26.59164 -26.16720 -23.16152 -21.97860 -21.52192 -20.66343 -20.12706 -19.42460 -17.84672 -17.47641 -16.44501 -15.83751 -15.46279 -14.94847 -14.76498 -14.67850 -14.44017 -14.13588 -14.02629 -13.81637 -13.17834 -12.36810 -12.27676 -12.10947 -12.02223 -11.81538 -11.66616 -11.60313 -11.35385 -11.06714 -10.94846 -10.87831 -10.75572 -10.72082 -10.62353 -9.99297 -9.86170 -9.43971 -9.16313 -9.14369 -9.00897 -8.60889 -8.37549 -6.02283 -4.05549 2.76115 3.31314 3.36138 3.36277 3.37994 3.72256 4.22970 4.29944 4.38894 4.45075 4.62275 4.89395 4.92946 5.03763 5.06177 5.13881 5.31114 5.33348 5.39534 5.49857 5.66934 5.70401 5.73156 5.76667 5.80721 5.86021 5.97396 6.08806 6.10102 6.17947 6.38105 6.52250 6.57310 6.61623 6.80903 6.97381 7.01853 7.07127 7.62896 7.75989 7.96496 8.15927 8.37402 8.77329 9.00968 9.58562 11.09017 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.040935 B = 0.002643 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.847574 B =10591.878050 C =10642.030205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.120 4.120 11 C 0.136 3.864 12 N -0.743 5.743 13 C 0.701 3.299 14 O -0.586 6.586 15 N -0.739 5.739 16 C 0.166 3.834 17 C -0.119 4.119 18 C -0.129 4.129 19 C -0.106 4.106 20 C 0.070 3.930 21 H 0.084 0.916 22 N -0.665 5.665 23 C 0.042 3.958 24 C -0.154 4.154 25 H 0.262 0.738 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.393 0.607 33 H 0.392 0.608 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.337 0.663 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.381 -24.664 0.042 26.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.158 4.158 11 C 0.013 3.987 12 N -0.397 5.397 13 C 0.400 3.600 14 O -0.464 6.464 15 N -0.395 5.395 16 C 0.077 3.923 17 C -0.158 4.158 18 C -0.167 4.167 19 C -0.144 4.144 20 C -0.042 4.042 21 H 0.102 0.898 22 N -0.292 5.292 23 C -0.088 4.088 24 C -0.194 4.194 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.225 0.775 33 H 0.226 0.774 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.153 0.847 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.104 0.896 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.104 -25.404 0.335 26.381 hybrid contribution 1.210 2.235 -0.396 2.572 sum 8.314 -23.169 -0.060 24.616 Atomic orbital electron populations 1.69956 1.06061 1.26812 1.50448 1.25029 0.94859 0.99289 0.95265 0.86642 0.79564 0.83100 0.78579 1.20256 1.21251 1.20238 1.21169 0.92944 0.90974 1.51091 0.92721 1.19018 0.93838 0.90791 0.97662 1.21886 0.99781 0.93378 1.00770 1.21491 0.91275 0.84158 1.01793 1.45418 1.10382 1.04521 1.79400 1.16004 0.85432 0.80629 0.77894 1.90908 1.13979 1.83999 1.57514 1.45160 1.08576 1.04450 1.81280 1.21821 0.94228 0.80280 0.95979 1.22945 0.97142 1.00994 0.94674 1.22819 0.97880 0.98409 0.97552 1.22274 1.00377 0.98189 0.93548 1.23030 0.97110 0.91805 0.92223 0.89754 1.62779 1.07323 1.52903 1.06163 1.23125 0.88740 0.95599 1.01305 1.23448 1.01839 0.96879 0.97275 0.92852 0.96286 0.96257 0.92802 0.92829 0.92051 0.92012 0.77454 0.77411 0.90035 0.90977 0.91332 0.91656 0.90457 0.91336 0.84699 0.89978 0.90484 0.89612 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.65 9.11 -34.44 -0.31 -14.97 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.63 4.97 -27.89 -0.14 0.49 16 10 C -0.12 -2.35 5.27 -26.73 -0.14 -2.50 16 11 C 0.14 2.43 5.67 -4.04 -0.02 2.40 16 12 N -0.74 -10.70 5.56 -65.22 -0.36 -11.07 16 13 C 0.70 10.44 7.85 -86.92 -0.68 9.76 16 14 O -0.59 -10.99 14.25 5.29 0.08 -10.91 16 15 N -0.74 -7.95 5.24 -50.25 -0.26 -8.21 16 16 C 0.17 1.66 0.87 -129.50 -0.11 1.55 16 17 C -0.12 -1.28 5.64 -24.25 -0.14 -1.42 16 18 C -0.13 -1.08 6.93 -23.90 -0.17 -1.24 16 19 C -0.11 -0.80 6.44 -25.14 -0.16 -0.96 16 20 C 0.07 0.55 3.95 -65.72 -0.26 0.29 16 21 H 0.08 0.57 7.68 -51.93 -0.40 0.18 16 22 N -0.67 -5.10 7.03 -102.22 -0.72 -5.82 16 23 C 0.04 0.34 7.38 -1.93 -0.01 0.32 16 24 C -0.15 -1.63 5.02 -24.92 -0.13 -1.75 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.39 4.52 8.49 -40.82 -0.35 4.18 16 33 H 0.39 3.16 8.30 -40.82 -0.34 2.82 16 34 H 0.08 1.12 6.69 -51.93 -0.35 0.78 16 35 H 0.07 0.76 7.54 -51.93 -0.39 0.37 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.61 7.90 -51.93 -0.41 0.20 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.34 2.25 8.92 -39.29 -0.35 1.90 16 41 H 0.08 0.65 8.11 -51.93 -0.42 0.23 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 1.06 7.53 -51.93 -0.39 0.67 16 44 H 0.07 0.79 8.11 -51.93 -0.42 0.37 16 LS Contribution 347.53 15.07 5.24 5.24 Total: -1.00 -32.24 347.53 -10.27 -42.52 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -7.59 Total: 4.43 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -2.37 Total: -6.49 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.61 Total: -51.27 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.08 Total: -10.91 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.24 -10.27 -42.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891512358.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.453 kcal (2) G-P(sol) polarization free energy of solvation -32.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds