Wall clock time and date at job start Tue Mar 31 2020 05:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99912 * 2 1 4 4 H 1.48506 * 109.47028 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47093 * 299.99850 * 3 2 1 6 6 H 1.48504 * 109.47188 * 59.99745 * 3 2 1 7 7 C 1.37875 * 120.00335 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00301 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99636 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46944 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47423 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47313 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99672 * 179.97438 * 12 11 10 14 14 O 1.21591 * 120.00187 * 4.99800 * 13 12 11 15 15 N 1.34772 * 120.00015 * 184.99015 * 13 12 11 16 16 C 1.47864 * 122.23207 * 355.23778 * 15 13 12 17 17 C 1.52713 * 111.06654 * 232.47636 * 16 15 13 18 18 C 1.53869 * 111.52769 * 311.48247 * 17 16 15 19 19 C 1.51090 * 107.33596 * 56.93619 * 18 17 16 20 20 H 1.09003 * 108.37055 * 51.30806 * 19 18 17 21 21 N 1.45467 * 119.10404 * 176.23883 * 19 18 17 22 22 C 1.48799 * 106.76411 * 151.00760 * 21 19 18 23 23 C 1.55465 * 106.93776 * 354.57763 * 22 21 19 24 24 C 1.45706 * 122.23564 * 175.25466 * 15 13 12 25 25 H 1.08999 * 111.04108 * 241.28233 * 24 15 13 26 26 H 0.97000 * 120.00579 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47065 * 60.00632 * 9 7 2 28 28 H 1.08996 * 109.47365 * 299.99849 * 9 7 2 29 29 H 1.08999 * 109.47414 * 59.99950 * 10 9 7 30 30 H 1.09002 * 109.47090 * 300.00455 * 10 9 7 31 31 H 1.09004 * 109.46612 * 59.99480 * 11 10 9 32 32 H 1.09003 * 109.46549 * 300.00590 * 11 10 9 33 33 H 0.96994 * 119.99884 * 359.97438 * 12 11 10 34 34 H 1.08997 * 109.15631 * 352.88389 * 16 15 13 35 35 H 1.09004 * 109.16144 * 112.06523 * 16 15 13 36 36 H 1.09001 * 109.06910 * 72.00271 * 17 16 15 37 37 H 1.09000 * 109.06663 * 190.95257 * 17 16 15 38 38 H 1.09005 * 109.88601 * 297.47855 * 18 17 16 39 39 H 1.09003 * 109.94559 * 176.42814 * 18 17 16 40 40 H 1.00901 * 110.99658 * 272.09802 * 21 19 18 41 41 H 1.09006 * 109.96319 * 235.21140 * 22 21 19 42 42 H 1.08993 * 109.99916 * 113.96692 * 22 21 19 43 43 H 1.09003 * 110.97496 * 219.19579 * 23 22 21 44 44 H 1.09003 * 111.00638 * 95.43281 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0027 11 6 1.4804 -4.9871 0.0033 12 7 2.4324 -6.1006 0.0049 13 6 1.9831 -7.3712 0.0061 14 8 0.7915 -7.5949 -0.0858 15 7 2.8547 -8.3940 0.1091 16 6 4.3184 -8.1849 0.1197 17 6 5.0053 -9.0583 -0.9279 18 6 4.5246 -10.5179 -0.8493 19 6 3.0230 -10.5070 -1.0167 20 1 2.7812 -9.9327 -1.9110 21 7 2.3074 -11.7725 -1.0658 22 6 0.9437 -11.5155 -0.5288 23 6 0.9258 -10.0456 -0.0226 24 6 2.4175 -9.7798 0.2172 25 1 2.7490 -10.2226 1.1564 26 1 -0.4851 0.8400 -0.0004 27 1 0.6241 -2.5575 -0.8880 28 1 0.6247 -2.5563 0.8919 29 1 2.8720 -3.6035 0.8926 30 1 2.8720 -3.6050 -0.8873 31 1 0.8539 -5.0453 -0.8869 32 1 0.8533 -5.0442 0.8931 33 1 3.3860 -5.9233 0.0051 34 1 4.5315 -7.1372 -0.0926 35 1 4.7086 -8.4356 1.1061 36 1 4.7853 -8.6640 -1.9200 37 1 6.0827 -9.0289 -0.7651 38 1 4.7865 -10.9428 0.1198 39 1 4.9823 -11.1036 -1.6465 40 1 2.2634 -12.1265 -2.0096 41 1 0.7344 -12.1960 0.2967 42 1 0.2020 -11.6469 -1.3165 43 1 0.3600 -9.9593 0.9051 44 1 0.5276 -9.3750 -0.7840 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891512988.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:01 Heat of formation + Delta-G solvation = -27.340657 kcal Electronic energy + Delta-G solvation = -22453.652775 eV Core-core repulsion = 19212.518647 eV Total energy + Delta-G solvation = -3241.134127 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.96262 -38.70616 -36.03740 -35.42313 -33.31741 -33.06458 -31.24340 -29.46325 -29.20889 -26.73062 -25.06625 -23.11931 -22.42110 -21.64537 -20.74984 -20.39739 -19.56352 -17.69763 -16.75639 -16.37281 -15.91178 -15.53631 -15.28112 -14.74119 -14.70800 -14.45944 -14.09336 -13.87372 -13.74644 -13.52871 -12.99081 -12.45865 -12.30126 -12.04741 -11.83984 -11.81353 -11.65329 -11.38413 -11.22357 -11.05810 -10.92942 -10.83184 -10.70165 -10.56687 -9.87257 -9.71454 -9.38490 -9.11555 -8.93949 -8.70635 -8.45512 -8.38249 -6.02611 -4.05703 2.60353 3.28973 3.29185 3.36696 3.40077 3.68582 4.01402 4.34634 4.43607 4.49618 4.64012 4.68814 4.84466 4.95068 5.05583 5.12783 5.26458 5.31711 5.33264 5.47464 5.55946 5.57016 5.65368 5.70211 5.76691 5.80585 5.96916 6.05858 6.11003 6.17638 6.34291 6.50477 6.61348 6.68591 6.82502 7.00654 7.01793 7.08982 7.63280 7.75878 7.96324 8.05881 8.37266 8.72995 9.01219 9.58560 11.08725 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.035301 B = 0.002942 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.989572 B = 9514.357101 C =10136.626144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.134 3.866 12 N -0.742 5.742 13 C 0.709 3.291 14 O -0.585 6.585 15 N -0.628 5.628 16 C 0.112 3.888 17 C -0.133 4.133 18 C -0.100 4.100 19 C 0.056 3.944 20 H 0.042 0.958 21 N -0.672 5.672 22 C 0.041 3.959 23 C -0.133 4.133 24 C 0.156 3.844 25 H 0.085 0.915 26 H 0.261 0.739 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.392 0.608 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.339 0.661 41 H 0.077 0.923 42 H 0.054 0.946 43 H 0.077 0.923 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.549 -23.176 -1.290 25.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.011 3.989 12 N -0.398 5.398 13 C 0.411 3.589 14 O -0.463 6.463 15 N -0.366 5.366 16 C -0.011 4.011 17 C -0.172 4.172 18 C -0.138 4.138 19 C -0.055 4.055 20 H 0.060 0.940 21 N -0.302 5.302 22 C -0.088 4.088 23 C -0.171 4.171 24 C 0.050 3.950 25 H 0.103 0.897 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.227 0.773 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.155 0.845 41 H 0.095 0.905 42 H 0.072 0.928 43 H 0.096 0.904 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.751 -23.434 -0.738 25.026 hybrid contribution 0.555 1.583 -0.766 1.844 sum 9.306 -21.851 -1.503 23.798 Atomic orbital electron populations 1.69973 1.06058 1.26582 1.50644 1.25031 0.94855 0.99311 0.95293 0.86531 0.80040 0.83774 0.77607 1.19764 1.20999 1.20994 1.21240 0.93014 0.90935 1.50809 0.92612 1.19028 0.93844 0.90806 0.97684 1.21889 0.99795 0.93366 1.00764 1.21514 0.91319 0.84178 1.01851 1.45587 1.10476 1.04487 1.79216 1.15880 0.84727 0.80539 0.77794 1.90868 1.14300 1.83246 1.57931 1.47096 1.05557 1.05459 1.78536 1.21622 0.79747 1.00133 0.99601 1.21938 1.00390 0.95092 0.99768 1.21197 0.93898 0.95891 1.02792 1.22090 0.95183 0.90100 0.98141 0.93971 1.61477 1.14098 1.27203 1.27390 1.23171 0.89169 0.96697 0.99807 1.22957 0.94772 0.95213 1.04207 1.21708 0.95996 0.79905 0.97365 0.89673 0.92973 0.96246 0.96249 0.92799 0.92838 0.91932 0.92003 0.77275 0.90218 0.91281 0.91529 0.90036 0.90997 0.91446 0.84481 0.90514 0.92754 0.90402 0.87862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.83 13.29 55.43 0.74 -26.10 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.35 5.27 -26.73 -0.14 -2.50 16 11 C 0.13 2.41 5.68 -4.04 -0.02 2.39 16 12 N -0.74 -11.07 5.48 -65.22 -0.36 -11.43 16 13 C 0.71 11.09 8.33 -86.92 -0.72 10.36 16 14 O -0.59 -11.08 13.09 5.29 0.07 -11.01 16 15 N -0.63 -7.53 2.91 -169.69 -0.49 -8.02 16 16 C 0.11 0.95 6.36 -3.44 -0.02 0.93 16 17 C -0.13 -0.93 5.92 -26.43 -0.16 -1.09 16 18 C -0.10 -0.76 5.97 -27.24 -0.16 -0.92 16 19 C 0.06 0.54 2.66 -68.12 -0.18 0.36 16 20 H 0.04 0.48 8.04 -51.93 -0.42 0.06 16 21 N -0.67 -6.10 7.40 -104.46 -0.77 -6.87 16 22 C 0.04 0.38 7.63 -1.46 -0.01 0.37 16 23 C -0.13 -1.61 5.09 -25.21 -0.13 -1.74 16 24 C 0.16 1.75 3.31 -66.82 -0.22 1.53 16 25 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.39 4.80 6.11 -40.82 -0.25 4.55 16 34 H 0.08 0.62 5.82 -51.93 -0.30 0.32 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.34 2.60 8.90 -39.29 -0.35 2.25 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.10 1.55 6.06 -51.93 -0.31 1.23 16 LS Contribution 341.88 15.07 5.15 5.15 Total: -1.00 -32.07 341.88 -10.52 -42.60 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -7.51 Total: 2.44 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -2.32 Total: -3.19 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: -0.89 Total: -52.42 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.07 Total: -11.01 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.07 -10.52 -42.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891512988.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.255 kcal (2) G-P(sol) polarization free energy of solvation -32.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds