Wall clock time and date at job start Tue Mar 31 2020 05:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99504 * 2 1 4 4 H 1.48501 * 109.46984 * 239.72443 * 3 2 1 5 5 H 1.48498 * 109.47577 * 359.72814 * 3 2 1 6 6 H 1.48504 * 109.46888 * 119.72709 * 3 2 1 7 7 C 1.37875 * 119.99955 * 179.72821 * 2 1 3 8 8 H 1.07997 * 119.99545 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00381 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47074 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46958 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47033 * 179.97438 * 11 10 9 13 13 C 1.34782 * 119.99842 * 179.97438 * 12 11 10 14 14 O 1.21584 * 120.00195 * 355.01096 * 13 12 11 15 15 N 1.34776 * 119.99755 * 175.00707 * 13 12 11 16 16 C 1.47855 * 122.23263 * 4.76400 * 15 13 12 17 17 C 1.52713 * 111.05557 * 127.50843 * 16 15 13 18 18 C 1.53870 * 111.53077 * 48.53107 * 17 16 15 19 19 C 1.51095 * 107.33553 * 303.05177 * 18 17 16 20 20 H 1.09001 * 108.78394 * 308.46233 * 19 18 17 21 21 N 1.45471 * 119.10666 * 183.14698 * 19 18 17 22 22 C 1.48791 * 106.76594 * 208.99212 * 21 19 18 23 23 C 1.55470 * 106.93656 * 5.42297 * 22 21 19 24 24 C 1.45712 * 122.22854 * 184.47248 * 15 13 12 25 25 H 1.09002 * 111.03567 * 119.57019 * 24 15 13 26 26 H 0.97000 * 120.00593 * 0.27165 * 1 2 3 27 27 H 1.09004 * 109.46482 * 300.00155 * 9 7 2 28 28 H 1.08992 * 109.46903 * 59.99809 * 9 7 2 29 29 H 1.08993 * 109.47115 * 299.99754 * 10 9 7 30 30 H 1.09000 * 109.47391 * 60.00323 * 10 9 7 31 31 H 1.08998 * 109.47522 * 300.00133 * 11 10 9 32 32 H 1.09005 * 109.47071 * 59.99806 * 11 10 9 33 33 H 0.96996 * 120.00081 * 0.02562 * 12 11 10 34 34 H 1.08997 * 109.15916 * 247.91573 * 16 15 13 35 35 H 1.09002 * 109.15649 * 7.16106 * 16 15 13 36 36 H 1.09001 * 109.06711 * 169.05613 * 17 16 15 37 37 H 1.09003 * 109.07041 * 288.06892 * 17 16 15 38 38 H 1.08999 * 109.88620 * 62.51033 * 18 17 16 39 39 H 1.09003 * 109.88291 * 183.52477 * 18 17 16 40 40 H 1.00904 * 110.99951 * 330.09703 * 21 19 18 41 41 H 1.08997 * 109.96546 * 124.79828 * 22 21 19 42 42 H 1.09001 * 109.96603 * 246.02010 * 22 21 19 43 43 H 1.09006 * 110.96876 * 140.80330 * 23 22 21 44 44 H 1.08990 * 110.97621 * 264.54347 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1078 1.6936 -1.2091 5 1 1.2841 2.7465 -0.0066 6 1 3.0978 1.6994 1.2159 7 6 2.0045 -1.1940 0.0057 8 1 3.0845 -1.1939 0.0061 9 6 1.2511 -2.4992 0.0124 10 6 2.2454 -3.6619 0.0185 11 6 1.4804 -4.9870 0.0260 12 7 2.4325 -6.1004 0.0312 13 6 1.9833 -7.3712 0.0387 14 8 0.7918 -7.5942 0.1328 15 7 2.8549 -8.3946 -0.0581 16 6 4.3185 -8.1854 -0.0711 17 6 5.0059 -9.0517 0.9821 18 6 4.5253 -10.5118 0.9136 19 6 3.0238 -10.5000 1.0818 20 1 2.7751 -9.9245 1.9735 21 7 2.3068 -11.7649 1.1264 22 6 0.9432 -11.5044 0.5911 23 6 0.9266 -10.0325 0.0907 24 6 2.4177 -9.7815 -0.1508 25 1 2.7581 -10.2377 -1.0804 26 1 -0.4851 0.8400 -0.0040 27 1 0.6248 -2.5524 0.9030 28 1 0.6242 -2.5613 -0.8769 29 1 2.8720 -3.6088 -0.8718 30 1 2.8720 -3.5996 0.9082 31 1 0.8541 -5.0399 0.9164 32 1 0.8534 -5.0496 -0.8635 33 1 3.3861 -5.9232 0.0299 34 1 4.7080 -8.4429 -1.0559 35 1 4.5317 -7.1364 0.1349 36 1 6.0832 -9.0233 0.8187 37 1 4.7854 -8.6513 1.9717 38 1 4.7867 -10.9432 -0.0527 39 1 4.9846 -11.0912 1.7145 40 1 2.7811 -12.4688 0.5808 41 1 0.7327 -12.1815 -0.2367 42 1 0.2021 -11.6385 1.3791 43 1 0.3604 -9.9420 -0.8364 44 1 0.5291 -9.3650 0.8550 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891512989.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:03 Heat of formation + Delta-G solvation = -27.820924 kcal Electronic energy + Delta-G solvation = -22466.392115 eV Core-core repulsion = 19225.237162 eV Total energy + Delta-G solvation = -3241.154953 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.04543 -38.77880 -36.04496 -35.42001 -33.31227 -33.09804 -31.21896 -29.33106 -29.22334 -26.72508 -25.09823 -23.11765 -22.41319 -21.63379 -20.97040 -20.56270 -19.54499 -17.47187 -16.60092 -16.28531 -16.14402 -15.86175 -15.00570 -14.90019 -14.73300 -14.42533 -14.12724 -13.90845 -13.69416 -13.40567 -13.15219 -12.36803 -12.27533 -12.22354 -11.82548 -11.77187 -11.60692 -11.46361 -11.20348 -11.09029 -10.88663 -10.81446 -10.69411 -10.61382 -9.86080 -9.67528 -9.36770 -9.14046 -9.10065 -8.79423 -8.37134 -8.33858 -6.01747 -4.05043 2.60826 3.29857 3.31650 3.36516 3.38257 3.68653 4.01709 4.39318 4.43912 4.47222 4.57226 4.64640 4.79765 4.89967 5.06009 5.08960 5.15250 5.25801 5.33838 5.36809 5.46438 5.61201 5.68962 5.69980 5.75364 5.81212 5.90615 6.02000 6.14986 6.18280 6.39245 6.50453 6.61995 6.66697 6.82670 7.01975 7.04391 7.10087 7.63432 7.76602 7.96962 8.06382 8.37841 8.73873 9.01438 9.59029 11.09521 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.035515 B = 0.002943 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.217396 B = 9511.633358 C =10138.063140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.742 5.742 13 C 0.708 3.292 14 O -0.584 6.584 15 N -0.626 5.626 16 C 0.112 3.888 17 C -0.131 4.131 18 C -0.111 4.111 19 C 0.055 3.945 20 H 0.084 0.916 21 N -0.665 5.665 22 C 0.038 3.962 23 C -0.132 4.132 24 C 0.124 3.876 25 H 0.074 0.926 26 H 0.262 0.738 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.392 0.608 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.333 0.667 41 H 0.056 0.944 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.233 -23.592 -0.219 25.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.158 4.158 11 C 0.011 3.989 12 N -0.398 5.398 13 C 0.410 3.590 14 O -0.462 6.462 15 N -0.364 5.364 16 C -0.012 4.012 17 C -0.170 4.170 18 C -0.149 4.149 19 C -0.056 4.056 20 H 0.102 0.898 21 N -0.293 5.293 22 C -0.091 4.091 23 C -0.170 4.170 24 C 0.017 3.983 25 H 0.092 0.908 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.037 0.963 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.227 0.773 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.148 0.852 41 H 0.075 0.925 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.964 -23.553 0.554 25.207 hybrid contribution 1.175 1.203 -1.048 1.982 sum 10.139 -22.349 -0.494 24.547 Atomic orbital electron populations 1.69955 1.06057 1.26815 1.50445 1.25028 0.94856 0.99281 0.95271 0.86642 0.79562 0.83111 0.78572 1.20260 1.21259 1.20244 1.21166 0.92940 0.90973 1.51088 0.92723 1.19015 0.93830 0.90763 0.97681 1.21886 0.99799 0.93380 1.00744 1.21514 0.91316 0.84167 1.01862 1.45587 1.10451 1.04493 1.79253 1.15880 0.84746 0.80532 0.77809 1.90872 1.14295 1.83223 1.57781 1.47039 1.05432 1.05259 1.78673 1.21619 0.79870 1.00286 0.99380 1.21891 1.00311 0.94763 1.00025 1.21369 0.94327 0.96871 1.02351 1.22263 0.93809 0.91108 0.98451 0.89788 1.62065 1.03345 1.07709 1.56164 1.23269 0.91063 0.96194 0.98581 1.22925 0.94295 0.95827 1.04003 1.22318 0.96856 0.81126 0.97990 0.90819 0.92853 0.96243 0.96261 0.92839 0.92818 0.91875 0.92043 0.77312 0.91500 0.90133 0.90071 0.91143 0.91661 0.90728 0.85153 0.92518 0.90225 0.90708 0.87357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.63 4.97 -27.89 -0.14 0.49 16 10 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 11 C 0.13 2.42 5.68 -4.04 -0.02 2.40 16 12 N -0.74 -11.09 5.48 -65.22 -0.36 -11.45 16 13 C 0.71 11.09 8.33 -86.91 -0.72 10.37 16 14 O -0.58 -11.10 13.06 5.29 0.07 -11.03 16 15 N -0.63 -7.39 2.92 -170.16 -0.50 -7.89 16 16 C 0.11 0.92 6.36 -3.45 -0.02 0.90 16 17 C -0.13 -0.88 5.93 -26.43 -0.16 -1.04 16 18 C -0.11 -0.76 5.86 -27.24 -0.16 -0.92 16 19 C 0.06 0.52 2.72 -68.38 -0.19 0.33 16 20 H 0.08 1.01 8.06 -51.93 -0.42 0.60 16 21 N -0.67 -6.00 7.41 -104.74 -0.78 -6.78 16 22 C 0.04 0.36 7.62 -1.46 -0.01 0.35 16 23 C -0.13 -1.59 5.03 -25.35 -0.13 -1.72 16 24 C 0.12 1.33 3.26 -67.22 -0.22 1.11 16 25 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.39 4.80 6.11 -40.82 -0.25 4.55 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.62 5.82 -51.93 -0.30 0.32 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.39 8.11 -51.93 -0.42 -0.03 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.33 2.35 8.79 -39.29 -0.35 2.01 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.11 1.66 6.09 -51.93 -0.32 1.34 16 LS Contribution 341.64 15.07 5.15 5.15 Total: -1.00 -32.25 341.64 -10.53 -42.78 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -7.51 Total: 2.55 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -2.32 Total: -3.64 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -0.89 Total: -52.28 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.07 Total: -11.03 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.25 -10.53 -42.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891512989.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.961 kcal (2) G-P(sol) polarization free energy of solvation -32.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds