Wall clock time and date at job start Tue Mar 31 2020 05:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99806 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99686 * 179.72339 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47367 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47313 * 180.02562 * 11 10 9 13 13 C 1.34778 * 120.00064 * 179.97438 * 12 11 10 14 14 O 1.21585 * 120.00137 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99865 * 180.02562 * 13 12 11 16 16 C 1.45521 * 117.21856 * 359.97438 * 15 13 12 17 17 C 1.53245 * 108.93776 * 206.55141 * 16 15 13 18 18 C 1.52758 * 107.76710 * 302.24023 * 17 16 15 19 19 C 1.51110 * 111.46997 * 65.07076 * 18 17 16 20 20 H 1.08996 * 108.05137 * 202.73449 * 19 18 17 21 21 N 1.48188 * 110.35817 * 85.01531 * 19 18 17 22 22 C 1.48897 * 104.94429 * 205.92300 * 21 19 18 23 23 C 1.55189 * 102.62965 * 40.91827 * 22 21 19 24 24 C 1.44031 * 117.21345 * 179.73746 * 15 13 12 25 25 H 1.08993 * 108.47993 * 303.97167 * 24 15 13 26 26 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 28 28 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 29 29 H 1.08998 * 109.47065 * 300.00574 * 10 9 7 30 30 H 1.09006 * 109.46890 * 59.99833 * 10 9 7 31 31 H 1.08998 * 109.47353 * 300.00222 * 11 10 9 32 32 H 1.09001 * 109.47005 * 60.00203 * 11 10 9 33 33 H 0.96998 * 120.00376 * 0.02562 * 12 11 10 34 34 H 1.09004 * 109.55774 * 326.38811 * 16 15 13 35 35 H 1.08997 * 109.55912 * 86.71314 * 16 15 13 36 36 H 1.08998 * 109.79554 * 61.80630 * 17 16 15 37 37 H 1.08997 * 109.80207 * 182.66840 * 17 16 15 38 38 H 1.09002 * 109.07801 * 185.57531 * 18 17 16 39 39 H 1.09000 * 109.08287 * 304.55584 * 18 17 16 40 40 H 1.00899 * 111.00751 * 85.93930 * 21 19 18 41 41 H 1.08999 * 110.78278 * 159.20074 * 22 21 19 42 42 H 1.08998 * 110.78140 * 282.44058 * 22 21 19 43 43 H 1.08995 * 110.81522 * 79.77163 * 23 22 21 44 44 H 1.09004 * 110.81247 * 203.10150 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 -0.0058 10 6 4.0216 -2.6365 -0.0031 11 6 5.5515 -2.6365 -0.0089 12 7 6.0399 -4.0177 -0.0070 13 6 7.3650 -4.2640 -0.0118 14 8 8.1551 -3.3398 -0.0173 15 7 7.8142 -5.5347 -0.0106 16 6 6.8160 -6.5936 -0.0033 17 6 7.4213 -7.8432 0.6451 18 6 8.6686 -8.2236 -0.1506 19 6 9.7393 -7.1629 -0.0410 20 1 10.4013 -7.2611 -0.9013 21 7 10.5492 -7.3723 1.1821 22 6 11.0790 -6.0243 1.5274 23 6 9.8603 -5.1018 1.2589 24 6 9.2414 -5.7288 -0.0218 25 1 9.6543 -5.2063 -0.8847 26 1 -0.4850 0.8401 0.0004 27 1 3.8712 -0.6827 -0.8987 28 1 3.8785 -0.6777 0.8813 29 1 3.6619 -3.1474 0.8900 30 1 3.6545 -3.1533 -0.8899 31 1 5.9115 -2.1255 -0.9018 32 1 5.9182 -2.1199 0.8781 33 1 5.4096 -4.7550 -0.0030 34 1 5.9459 -6.2708 0.5684 35 1 6.5183 -6.8213 -1.0268 36 1 7.6938 -7.6278 1.6782 37 1 6.7008 -8.6605 0.6152 38 1 9.0608 -9.1663 0.2309 39 1 8.3979 -8.3496 -1.1989 40 1 11.3009 -8.0233 1.0112 41 1 11.3729 -5.9812 2.5761 42 1 11.9167 -5.7610 0.8816 43 1 9.1558 -5.1391 2.0897 44 1 10.1835 -4.0775 1.0729 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891512990.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:05 Heat of formation + Delta-G solvation = -26.523966 kcal Electronic energy + Delta-G solvation = -22508.722660 eV Core-core repulsion = 19267.623947 eV Total energy + Delta-G solvation = -3241.098713 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.07310 -38.80504 -35.91291 -35.55125 -33.35549 -33.24811 -31.45952 -29.72389 -29.27760 -27.03044 -25.05843 -23.23273 -22.71985 -21.59690 -20.76196 -20.22798 -18.75084 -18.28758 -16.88968 -16.62528 -16.27792 -15.82216 -15.12291 -14.97317 -14.55964 -14.32899 -14.30237 -13.99275 -13.60637 -13.40270 -12.89987 -12.67842 -12.50380 -12.11336 -11.99646 -11.91216 -11.73684 -11.48500 -11.22233 -11.09365 -10.93075 -10.88075 -10.81872 -10.16710 -9.95391 -9.78737 -9.64324 -9.21419 -9.03877 -8.87828 -8.54488 -8.46001 -6.05339 -4.03872 2.66278 3.28155 3.32499 3.39971 3.44746 3.78181 3.94960 4.24359 4.42801 4.45664 4.56672 4.60710 4.77938 4.92904 4.98513 5.07272 5.25599 5.28957 5.36398 5.40782 5.43836 5.55877 5.59833 5.65354 5.70272 5.71708 5.85931 5.98192 6.04384 6.06261 6.38755 6.41226 6.49059 6.59755 6.73450 6.84653 6.88296 6.96171 7.25127 7.38527 7.76937 8.02841 8.51378 8.69956 8.98650 9.57091 11.07937 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.035684 B = 0.003076 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.486881 B = 9101.817081 C = 9672.380087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.132 3.868 12 N -0.741 5.741 13 C 0.697 3.303 14 O -0.589 6.589 15 N -0.615 5.615 16 C 0.108 3.892 17 C -0.123 4.123 18 C -0.103 4.103 19 C 0.074 3.926 20 H 0.047 0.953 21 N -0.664 5.664 22 C 0.033 3.967 23 C -0.127 4.127 24 C 0.170 3.830 25 H 0.071 0.929 26 H 0.263 0.737 27 H 0.014 0.986 28 H 0.019 0.981 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.395 0.605 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.338 0.662 41 H 0.084 0.916 42 H 0.044 0.956 43 H 0.074 0.926 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.957 -18.575 0.478 28.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C 0.008 3.992 12 N -0.397 5.397 13 C 0.397 3.603 14 O -0.467 6.467 15 N -0.353 5.353 16 C -0.015 4.015 17 C -0.161 4.161 18 C -0.142 4.142 19 C -0.036 4.036 20 H 0.065 0.935 21 N -0.294 5.294 22 C -0.097 4.097 23 C -0.166 4.166 24 C 0.065 3.935 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.033 0.967 28 H 0.037 0.963 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.231 0.769 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.153 0.847 41 H 0.102 0.898 42 H 0.062 0.938 43 H 0.093 0.907 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 20.836 -17.823 0.947 27.435 hybrid contribution 0.694 0.667 -0.758 1.225 sum 21.530 -17.156 0.189 27.530 Atomic orbital electron populations 1.69913 1.06324 1.26943 1.51085 1.25030 0.94744 0.99239 0.94475 0.86774 0.80430 0.83511 0.78589 1.20254 1.21393 1.18853 1.21102 0.89333 0.94496 1.51015 0.91015 1.19497 0.97215 0.91473 0.96679 1.21702 0.90731 1.00995 1.01645 1.21510 0.95661 0.80206 1.01781 1.45541 1.04860 1.10134 1.79170 1.16007 0.83121 0.82911 0.78211 1.90888 1.54945 1.43013 1.57877 1.46156 1.05334 1.04809 1.78961 1.21479 0.90947 0.88333 1.00774 1.21683 0.97119 0.96687 1.00648 1.20992 0.94923 0.98042 1.00192 1.21455 0.96031 0.93918 0.92172 0.93509 1.63394 1.24187 1.09201 1.32591 1.23164 0.96288 0.88882 1.01339 1.23163 0.96602 0.99328 0.97534 1.20456 0.79754 0.94399 0.98921 0.91097 0.92711 0.96735 0.96275 0.92166 0.92195 0.92016 0.91995 0.76903 0.90565 0.91901 0.90326 0.90338 0.90834 0.91653 0.84690 0.89805 0.93771 0.90698 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 7 C -0.52 -14.75 9.66 -34.44 -0.33 -15.08 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 10 C -0.11 -2.13 5.27 -26.73 -0.14 -2.27 16 11 C 0.13 2.25 5.67 -4.05 -0.02 2.23 16 12 N -0.74 -10.79 5.36 -65.23 -0.35 -11.14 16 13 C 0.70 10.73 7.83 -86.91 -0.68 10.05 16 14 O -0.59 -11.10 14.70 5.29 0.08 -11.02 16 15 N -0.61 -7.32 2.92 -173.41 -0.51 -7.82 16 16 C 0.11 0.96 5.70 -4.44 -0.03 0.94 16 17 C -0.12 -0.93 6.11 -26.73 -0.16 -1.09 16 18 C -0.10 -0.73 5.50 -27.81 -0.15 -0.88 16 19 C 0.07 0.61 3.15 -68.55 -0.22 0.40 16 20 H 0.05 0.35 8.13 -51.93 -0.42 -0.07 16 21 N -0.66 -5.20 7.18 -104.67 -0.75 -5.95 16 22 C 0.03 0.27 7.57 -1.56 -0.01 0.26 16 23 C -0.13 -1.44 5.53 -24.27 -0.13 -1.58 16 24 C 0.17 1.89 2.80 -68.54 -0.19 1.69 16 25 H 0.07 0.87 8.03 -51.93 -0.42 0.46 16 26 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.01 0.34 7.58 -51.93 -0.39 -0.06 16 28 H 0.02 0.45 7.19 -51.93 -0.37 0.08 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.40 4.76 6.02 -40.82 -0.25 4.51 16 34 H 0.08 0.65 6.29 -51.93 -0.33 0.32 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 39 H 0.06 0.43 8.13 -51.93 -0.42 0.00 16 40 H 0.34 1.97 8.92 -39.29 -0.35 1.62 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 44 H 0.08 1.11 7.48 -51.93 -0.39 0.72 16 LS Contribution 340.17 15.07 5.13 5.13 Total: -1.00 -32.95 340.17 -10.15 -43.10 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -7.57 Total: 1.46 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -2.28 Total: -3.85 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -0.83 Total: -52.00 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.08 Total: -11.02 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.95 -10.15 -43.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891512990.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.580 kcal (2) G-P(sol) polarization free energy of solvation -32.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds